Bhi08G000557 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G000557
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Pre-mRNA-processing factor like
Location	chr8 : 21218044 .. 21218953 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATTAAGCTTCTTGCTAGAGGACGATTACACTCTTACAGTTCTATCGAGCACTCTATTTCCGGCATAAAATCAGGTATAAACCCTTTCCTACTCTCTTTTCCTTCTCATAGCTCTTCTGATTCTGCATTTGGTGATTTTGATTTGTTTTCAATGGGGGCATATGGTTTTCATTTCTCTGTCAGTTAGGGCTTCATTAATCTTCCATCTTTTTGCAGCGTTCAGTAGGAAAGATGTTGACTATTTTGTACCTAGCTCAAATACATGGTGGCGCGGAAGATCCTACGCTGCCTCTGTTGCTTCAGATATACCCGGTCCTGAGAAGGCTCGTAAACGTGTCTCTATAGAAGATCGGCGGGCAATTGTCGAATCTTTTGTACACAAGTACTCTCTTGTTTTATCCTCATTTGAAATTTCCCGGTTGATTTCACTTTTATGAACTGTGGCAAATGGTGGAAGTCTGTTCTGTATTGTTCTATTTAATGAGTGAACAGTTCTGATTTTAGTAATTAAGAGTATGATCATGAAGAAAAATGTGTATTGCATTTATTGCTACAGATTGCTTCAAGGAATTGGCATGTCTTCCTATTATTCTTCTGTTGCAAAAGGTATTCATTGCTCATACTAATAATGCAACCTGAAAAAGTAACAGATCAATGGAACTTTTTTTCCTGCTTATTTTGTTTATGTTAATTGATTTTAATTTTCTTTTTAGCAACATTTCTTTTTAATCTGATCACAGAATGTTCCATCTCGCACTGTTCTTGCTCACTGATCACTTGGGAATAATTTGCTAGCTATTGAAAGTTTTAATGCATCCTCAGTAACAAGCTTCTTTTTGCCTGACAATTTGAAGAGATAATGAATTTGTTTCTGTTTTGCTACTCTTTTTGTTGTCTGCAGGTGA

mRNA sequence

ATGAAGATTAAGCTTCTTGCTAGAGGACGATTACACTCTTACAGTTCTATCGAGCACTCTATTTCCGGCATAAAATCAGCGTTCAGTAGGAAAGATGTTGACTATTTTGTACCTAGCTCAAATACATGGTGGCGCGGAAGATCCTACGCTGCCTCTGTTGCTTCAGATATACCCGGTCCTGAGAAGGCTCGTAAACGTGTCTCTATAGAAGATCGGCGGGCAATTGTCGAATCTTTTGTACACAAGTGA

Coding sequence (CDS)

ATGAAGATTAAGCTTCTTGCTAGAGGACGATTACACTCTTACAGTTCTATCGAGCACTCTATTTCCGGCATAAAATCAGCGTTCAGTAGGAAAGATGTTGACTATTTTGTACCTAGCTCAAATACATGGTGGCGCGGAAGATCCTACGCTGCCTCTGTTGCTTCAGATATACCCGGTCCTGAGAAGGCTCGTAAACGTGTCTCTATAGAAGATCGGCGGGCAATTGTCGAATCTTTTGTACACAAGTGA

Protein sequence

MKIKLLARGRLHSYSSIEHSISGIKSAFSRKDVDYFVPSSNTWWRGRSYAASVASDIPGPEKARKRVSIEDRRAIVESFVHK

Homology

[Close]

BLAST of Bhi08G000557 vs. TrEMBL
Match: tr|A0A0A0M0E7|A0A0A0M0E7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G502350 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.1e-26
Identity = 62/82 (75.61%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 1  MKIKLLARGRLHSYSSIEHSISGIKSAFSRKDVDYFVPSSNTWWRGRSYAASVASDIPGP 60
          M+IKLL   RLHSYSS +H  SG+KS+FSRK++D FVP SNTWWRGRSY  SVASDIPGP
Sbjct: 4  MRIKLLPTRRLHSYSSADHLNSGLKSSFSRKELDNFVPYSNTWWRGRSYVPSVASDIPGP 63

Query: 61 EKARKRVSIEDRRAIVESFVHK 83
          EK RKRVS E+RRA+VESFVHK
Sbjct: 64 EKDRKRVSKEERRAMVESFVHK 85

[Close]

BLAST of Bhi08G000557 vs. TrEMBL
Match: tr|A0A1S3C592|A0A1S3C592_CUCME (uncharacterized protein LOC103497179 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497179 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.9e-24
Identity = 58/82 (70.73%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 1  MKIKLLARGRLHSYSSIEHSISGIKSAFSRKDVDYFVPSSNTWWRGRSYAASVASDIPGP 60
          M+IKLL   R+HSYSSI+H  SG+KSAF  K++D FVP+SN WWRGRSY  SVASDIPGP
Sbjct: 4  MRIKLLPTRRIHSYSSIDHLTSGLKSAFRWKELDNFVPNSNRWWRGRSYVPSVASDIPGP 63

Query: 61 EKARKRVSIEDRRAIVESFVHK 83
           K RKRV IE RRA++ESFVHK
Sbjct: 64 VKDRKRVPIEKRRAMIESFVHK 85

[Close]

BLAST of Bhi08G000557 vs. TrEMBL
Match: tr|A0A1S3C6C2|A0A1S3C6C2_CUCME (uncharacterized protein LOC103497179 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497179 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-22
Identity = 58/89 (65.17%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 1  MKIKLLARGRLHSYSSIEHSISGIKS-------AFSRKDVDYFVPSSNTWWRGRSYAASV 60
          M+IKLL   R+HSYSSI+H  SG+KS       AF  K++D FVP+SN WWRGRSY  SV
Sbjct: 4  MRIKLLPTRRIHSYSSIDHLTSGLKSVNLHHFAAFRWKELDNFVPNSNRWWRGRSYVPSV 63

Query: 61 ASDIPGPEKARKRVSIEDRRAIVESFVHK 83
          ASDIPGP K RKRV IE RRA++ESFVHK
Sbjct: 64 ASDIPGPVKDRKRVPIEKRRAMIESFVHK 92

[Close]

BLAST of Bhi08G000557 vs. TrEMBL
Match: tr|A0A2I4GZE5|A0A2I4GZE5_9ROSI (uncharacterized protein LOC109012204 OS=Juglans regia OX=51240 GN=LOC109012204 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-05
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1  MKIKLLARGRLHSYSSIEHSISGIKSAFSRKDVDYFVPSSNTWWRGRSYAASVA-SDIPG 60
          M +K++ARG  H++SS  +  S       R +++  V  S+  WRG+SY ASVA SDIP 
Sbjct: 12 MNMKVMARGG-HAFSSKSYQKS------VRIEINKVVGGSHIQWRGKSYTASVASSDIPS 71

Query: 61 -PEKARKRVSIEDRRAIVESFVHK 83
            +K R+RVS ++R+A+VESFV+K
Sbjct: 72 DAQKRRRRVSKDERQAMVESFVNK 88

[Close]

BLAST of Bhi08G000557 vs. TrEMBL
Match: tr|U5FL36|U5FL36_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G151900v3 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.2e-05
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 37 VPSSNTWWRGRSYAASVASDIPGPEKARKRVSIEDRRAIVESFVHK 83
          +  +N  WR RSYAASV S +P   KA+KRVS +DRRA+VES+V+K
Sbjct: 26 IHGANMQWRARSYAASVPSHMPQSHKAQKRVSKDDRRAMVESYVNK 71

[Close]

BLAST of Bhi08G000557 vs. NCBI nr
Match: XP_004152907.1 (PREDICTED: uncharacterized protein LOC101209410 [Cucumis sativus] >XP_011658023.1 PREDICTED: uncharacterized protein LOC101209410 [Cucumis sativus] >KGN65696.1 hypothetical protein Csa_1G502350 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 4.7e-26
Identity = 62/82 (75.61%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 1  MKIKLLARGRLHSYSSIEHSISGIKSAFSRKDVDYFVPSSNTWWRGRSYAASVASDIPGP 60
          M+IKLL   RLHSYSS +H  SG+KS+FSRK++D FVP SNTWWRGRSY  SVASDIPGP
Sbjct: 4  MRIKLLPTRRLHSYSSADHLNSGLKSSFSRKELDNFVPYSNTWWRGRSYVPSVASDIPGP 63

Query: 61 EKARKRVSIEDRRAIVESFVHK 83
          EK RKRVS E+RRA+VESFVHK
Sbjct: 64 EKDRKRVSKEERRAMVESFVHK 85

[Close]

BLAST of Bhi08G000557 vs. NCBI nr
Match: XP_022970550.1 (uncharacterized protein LOC111469494 [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 4.0e-25
Identity = 62/82 (75.61%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 1  MKIKLLARGRLHSYSSIEHSISGIKSAFSRKDVDYFVPSSNTWWRGRSYAASVASDIPGP 60
          M+IKLLA   LHS  S EHSISG+KSAF+RKDVD FVP+ N WWRGRSYAASVASD+P P
Sbjct: 4  MRIKLLAGRGLHSNCSFEHSISGLKSAFTRKDVDNFVPTPNAWWRGRSYAASVASDVPRP 63

Query: 61 EKARKRVSIEDRRAIVESFVHK 83
          EK RK+VS EDRRA+VESFV K
Sbjct: 64 EKDRKKVSREDRRAMVESFVDK 85

[Close]

BLAST of Bhi08G000557 vs. NCBI nr
Match: XP_008457506.1 (PREDICTED: uncharacterized protein LOC103497179 isoform X2 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 4.4e-24
Identity = 58/82 (70.73%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 1  MKIKLLARGRLHSYSSIEHSISGIKSAFSRKDVDYFVPSSNTWWRGRSYAASVASDIPGP 60
          M+IKLL   R+HSYSSI+H  SG+KSAF  K++D FVP+SN WWRGRSY  SVASDIPGP
Sbjct: 4  MRIKLLPTRRIHSYSSIDHLTSGLKSAFRWKELDNFVPNSNRWWRGRSYVPSVASDIPGP 63

Query: 61 EKARKRVSIEDRRAIVESFVHK 83
           K RKRV IE RRA++ESFVHK
Sbjct: 64 VKDRKRVPIEKRRAMIESFVHK 85

[Close]

BLAST of Bhi08G000557 vs. NCBI nr
Match: XP_022964986.1 (uncharacterized protein LOC111464933 [Cucurbita moschata])

HSP 1 Score: 119.8 bits (299), Expect = 4.4e-24
Identity = 60/82 (73.17%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 1  MKIKLLARGRLHSYSSIEHSISGIKSAFSRKDVDYFVPSSNTWWRGRSYAASVASDIPGP 60
          M+IKLLA   LHS SS EHSISG+KSAF+RK+VD FVP+ N WWRGRSYAASVASD+P P
Sbjct: 4  MRIKLLAGRGLHSNSSFEHSISGLKSAFTRKEVDNFVPTPNAWWRGRSYAASVASDVPRP 63

Query: 61 EKARKRVSIEDRRAIVESFVHK 83
          EK  K+VS +DRRA+VESFV K
Sbjct: 64 EKDGKKVSKQDRRAMVESFVDK 85

[Close]

BLAST of Bhi08G000557 vs. NCBI nr
Match: XP_023520102.1 (uncharacterized protein LOC111783410 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 1  MKIKLLARGRLHSYSSIEHSISGIKSAFSRKDVDYFVPSSNTWWRGRSYAASVASDIPGP 60
          M++KLLA   LHS  S EHSISG+KSAF+RK+VD FVP+ N WW GRSYAASVASD+P P
Sbjct: 4  MRLKLLAGRGLHSNCSFEHSISGLKSAFTRKEVDNFVPTPNAWWLGRSYAASVASDVPRP 63

Query: 61 EKARKRVSIEDRRAIVESFVHK 83
          EK RK+VS +DRRA+VESFV K
Sbjct: 64 EKGRKKVSKQDRRAMVESFVDK 85

The following BLAST results are available for this feature:

BLAST of Bhi08G000557 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi08G000557 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi08G000557 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M0E7\|A0A0A0M0E7_CUCSA	3.1e-26	75.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G502350 PE=4 SV=1	[more]
tr\|A0A1S3C592\|A0A1S3C592_CUCME	2.9e-24	70.73	uncharacterized protein LOC103497179 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3C6C2\|A0A1S3C6C2_CUCME	3.6e-22	65.17	uncharacterized protein LOC103497179 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2I4GZE5\|A0A2I4GZE5_9ROSI	2.3e-05	45.24	uncharacterized protein LOC109012204 OS=Juglans regia OX=51240 GN=LOC109012204 P...	[more]
tr\|U5FL36\|U5FL36_POPTR	5.2e-05	58.70	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G151900v3 PE=...	[more]

BLAST of Bhi08G000557 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152907.1	4.7e-26	75.61	PREDICTED: uncharacterized protein LOC101209410 [Cucumis sativus] >XP_011658023....	[more]
XP_022970550.1	4.0e-25	75.61	uncharacterized protein LOC111469494 [Cucurbita maxima]	[more]
XP_008457506.1	4.4e-24	70.73	PREDICTED: uncharacterized protein LOC103497179 isoform X2 [Cucumis melo]	[more]
XP_022964986.1	4.4e-24	73.17	uncharacterized protein LOC111464933 [Cucurbita moschata]	[more]
XP_023520102.1	1.7e-23	70.73	uncharacterized protein LOC111783410 [Cucurbita pepo subsp. pepo]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000557	Bhi08M000557	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34568:SF1	SUBFAMILY NOT NAMED	coord: 25..82
None	No IPR available	PANTHER	PTHR34568	FAMILY NOT NAMED	coord: 25..82

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G000557	Wax gourd	wgowgoB103
Bhi08G000557	Cucumber (Gy14) v1	cgywgoB442
Bhi08G000557	Cucumber (Gy14) v2	cgybwgoB045
Bhi08G000557	Cucurbita maxima (Rimu)	cmawgoB0252
Bhi08G000557	Cucurbita maxima (Rimu)	cmawgoB0593
Bhi08G000557	Cucurbita maxima (Rimu)	cmawgoB0703
Bhi08G000557	Cucurbita moschata (Rifu)	cmowgoB0245
Bhi08G000557	Cucurbita moschata (Rifu)	cmowgoB0590
Bhi08G000557	Cucurbita moschata (Rifu)	cmowgoB0761
Bhi08G000557	Cucurbita pepo (Zucchini)	cpewgoB0372
Bhi08G000557	Cucurbita pepo (Zucchini)	cpewgoB0650
Bhi08G000557	Cucurbita pepo (Zucchini)	cpewgoB0697
Bhi08G000557	Cucurbita pepo (Zucchini)	cpewgoB0968
Bhi08G000557	Wild cucumber (PI 183967)	cpiwgoB048
Bhi08G000557	Cucumber (Chinese Long) v3	cucwgoB050
Bhi08G000557	Cucumber (Chinese Long) v2	cuwgoB048
Bhi08G000557	Bottle gourd (USVL1VR-Ls)	lsiwgoB239
Bhi08G000557	Melon (DHL92) v3.6.1	medwgoB147
Bhi08G000557	Melon (DHL92) v3.6.1	medwgoB164
Bhi08G000557	Melon (DHL92) v3.5.1	mewgoB144
Bhi08G000557	Melon (DHL92) v3.5.1	mewgoB161
Bhi08G000557	Watermelon (Charleston Gray)	wcgwgoB340
Bhi08G000557	Watermelon (97103) v2	wgowmbB470
Bhi08G000557	Watermelon (97103) v1	wgowmB471
Bhi08G000557	Silver-seed gourd	carwgoB0393
Bhi08G000557	Silver-seed gourd	carwgoB0426
Bhi08G000557	Silver-seed gourd	carwgoB0535