Bhi08G000293 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G000293
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	traB domain-containing protein
Location	chr8 : 12241191 .. 12241475 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTGTTGCTTCAGGATTCTGGTGGAAATGGTAGTTCTTTGAAGCTTTATGAGAAGCTTAGTTTTTCTTATTTGTCCCTCCTTCAACCTCTCGTTCATGAACGAAATACTGTAAGTACAATCCTATAATGCATTTTTAGTTCTTACTTCTGCATTTATTTGTAATCACCATTTTTTCATTTGACATTCACAGTTACAAAGTTCTTAATATAGTTGCATTTGCAGTACCTTGTATGGTCTCTGAAGCGTAGCAAGGCAGTGAACAAGAGCAAGGGCATATGA

mRNA sequence

ATGGATGTGTTGCTTCAGGATTCTGGTGGAAATGGTAGTTCTTTGAAGCTTTATGAGAAGCTTAGTTTTTCTTATTTGTCCCTCCTTCAACCTCTCGTTCATGAACGAAATACTTACCTTGTATGGTCTCTGAAGCGTAGCAAGGCAGTGAACAAGAGCAAGGGCATATGA

Coding sequence (CDS)

ATGGATGTGTTGCTTCAGGATTCTGGTGGAAATGGTAGTTCTTTGAAGCTTTATGAGAAGCTTAGTTTTTCTTATTTGTCCCTCCTTCAACCTCTCGTTCATGAACGAAATACTTACCTTGTATGGTCTCTGAAGCGTAGCAAGGCAGTGAACAAGAGCAAGGGCATATGA

Protein sequence

MDVLLQDSGGNGSSLKLYEKLSFSYLSLLQPLVHERNTYLVWSLKRSKAVNKSKGI

Homology

[Close]

BLAST of Bhi08G000293 vs. TAIR10
Match: AT5G52030.2 (TraB family protein)

HSP 1 Score: 70.9 bits (172), Expect = 2.9e-13
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 6   QDSGGNGSSLKLYEKLSFSYLSLLQPLVHERNTYLVWSLKRSKAVNKSKGI 57
           Q++  N  SL+LYE+LSFSY +LL PL+HER+TYL WSLKRSKAVN  K +
Sbjct: 273 QETDENSGSLQLYERLSFSYPALLMPLIHERDTYLAWSLKRSKAVNGCKTV 323

[Close]

BLAST of Bhi08G000293 vs. TrEMBL
Match: tr|A0A1S3AXQ2|A0A1S3AXQ2_CUCME (traB domain-containing protein OS=Cucumis melo OX=3656 GN=LOC103484044 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-14
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 6   QDSGGNGSSLKLYEKLSFSYLSLLQPLVHERNTYLVWSLKRSKAVNKSKGI 57
           ++S GNGSSL+LYEKLSFSY SLLQPL+HER+TYL WSLKRSKAVNKSK +
Sbjct: 257 EESDGNGSSLQLYEKLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRV 307

[Close]

BLAST of Bhi08G000293 vs. TrEMBL
Match: tr|A0A0A0L5T2|A0A0A0L5T2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180280 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.4e-14
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 6   QDSGGNGSSLKLYEKLSFSYLSLLQPLVHERNTYLVWSLKRSKAVNKSKGI 57
           ++S GNGSSL+LYEKL FSY SLLQPL+HER+TYL WSLKRSKAVNKSK +
Sbjct: 161 EESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRV 211

[Close]

BLAST of Bhi08G000293 vs. TrEMBL
Match: tr|A0A2P5C9Y0|A0A2P5C9Y0_9ROSA (Pheromone shutdown OS=Trema orientalis OX=63057 GN=TorRG33x02_292810 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.3e-11
Identity = 35/52 (67.31%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 5   LQDSGGNGSSLKLYEKLSFSYLSLLQPLVHERNTYLVWSLKRSKAVNKSKGI 57
           +++S  + S+ +LYE+LSFSY SLLQPL+HER+TYL WSLKRSKAVNKSK +
Sbjct: 142 VEESSTDDSTFQLYEQLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRV 193

[Close]

BLAST of Bhi08G000293 vs. TrEMBL
Match: tr|A0A2I4FGG7|A0A2I4FGG7_9ROSI (traB domain-containing protein isoform X3 OS=Juglans regia OX=51240 GN=LOC108998613 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.3e-11
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 5   LQDSGGNGSSLKLYEKLSFSYLSLLQPLVHERNTYLVWSLKRSKAVNKSKGI 57
           L++S  + S+ +LYE+LSFSY SLLQPL+HER+TYL WSLKRSKAVN SK +
Sbjct: 142 LKESNSDDSTFRLYEQLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNNSKRV 193

[Close]

BLAST of Bhi08G000293 vs. TrEMBL
Match: tr|A0A2I4FGJ2|A0A2I4FGJ2_9ROSI (traB domain-containing protein isoform X2 OS=Juglans regia OX=51240 GN=LOC108998613 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.3e-11
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 5   LQDSGGNGSSLKLYEKLSFSYLSLLQPLVHERNTYLVWSLKRSKAVNKSKGI 57
           L++S  + S+ +LYE+LSFSY SLLQPL+HER+TYL WSLKRSKAVN SK +
Sbjct: 145 LKESNSDDSTFRLYEQLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNNSKRV 196

[Close]

BLAST of Bhi08G000293 vs. NCBI nr
Match: XP_008439166.1 (PREDICTED: traB domain-containing protein [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-14
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 6   QDSGGNGSSLKLYEKLSFSYLSLLQPLVHERNTYLVWSLKRSKAVNKSKGI 57
           ++S GNGSSL+LYEKLSFSY SLLQPL+HER+TYL WSLKRSKAVNKSK +
Sbjct: 257 EESDGNGSSLQLYEKLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRV 307

[Close]

BLAST of Bhi08G000293 vs. NCBI nr
Match: XP_022140935.1 (traB domain-containing protein isoform X1 [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-14
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 5   LQDSGGNGSSLKLYEKLSFSYLSLLQPLVHERNTYLVWSLKRSKAVNKSKGI 57
           LQ+SG NGSSL+LYE+L FSY SLLQPL+HER+TYL WSLKRSKAVNKSK +
Sbjct: 258 LQESGENGSSLQLYEQLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRV 309

[Close]

BLAST of Bhi08G000293 vs. NCBI nr
Match: XP_004140793.1 (PREDICTED: traB domain-containing protein isoform X1 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 8.2e-14
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 6   QDSGGNGSSLKLYEKLSFSYLSLLQPLVHERNTYLVWSLKRSKAVNKSKGI 57
           ++S GNGSSL+LYEKL FSY SLLQPL+HER+TYL WSLKRSKAVNKSK +
Sbjct: 279 EESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRV 329

[Close]

BLAST of Bhi08G000293 vs. NCBI nr
Match: KGN57340.1 (hypothetical protein Csa_3G180280 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 8.2e-14
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 6   QDSGGNGSSLKLYEKLSFSYLSLLQPLVHERNTYLVWSLKRSKAVNKSKGI 57
           ++S GNGSSL+LYEKL FSY SLLQPL+HER+TYL WSLKRSKAVNKSK +
Sbjct: 161 EESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRV 211

[Close]

BLAST of Bhi08G000293 vs. NCBI nr
Match: XP_011651134.1 (PREDICTED: traB domain-containing protein isoform X2 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 8.2e-14
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 6   QDSGGNGSSLKLYEKLSFSYLSLLQPLVHERNTYLVWSLKRSKAVNKSKGI 57
           ++S GNGSSL+LYEKL FSY SLLQPL+HER+TYL WSLKRSKAVNKSK +
Sbjct: 126 EESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRV 176

The following BLAST results are available for this feature:

BLAST of Bhi08G000293 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi08G000293 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52030.2	2.9e-13	64.71	TraB family protein	[more]

BLAST of Bhi08G000293 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXQ2\|A0A1S3AXQ2_CUCME	1.9e-14	80.39	traB domain-containing protein OS=Cucumis melo OX=3656 GN=LOC103484044 PE=4 SV=1	[more]
tr\|A0A0A0L5T2\|A0A0A0L5T2_CUCSA	5.4e-14	78.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180280 PE=4 SV=1	[more]
tr\|A0A2P5C9Y0\|A0A2P5C9Y0_9ROSA	4.3e-11	67.31	Pheromone shutdown OS=Trema orientalis OX=63057 GN=TorRG33x02_292810 PE=4 SV=1	[more]
tr\|A0A2I4FGG7\|A0A2I4FGG7_9ROSI	4.3e-11	67.31	traB domain-containing protein isoform X3 OS=Juglans regia OX=51240 GN=LOC108998...	[more]
tr\|A0A2I4FGJ2\|A0A2I4FGJ2_9ROSI	4.3e-11	67.31	traB domain-containing protein isoform X2 OS=Juglans regia OX=51240 GN=LOC108998...	[more]

BLAST of Bhi08G000293 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439166.1	2.8e-14	80.39	PREDICTED: traB domain-containing protein [Cucumis melo]	[more]
XP_022140935.1	4.8e-14	78.85	traB domain-containing protein isoform X1 [Momordica charantia]	[more]
XP_004140793.1	8.2e-14	78.43	PREDICTED: traB domain-containing protein isoform X1 [Cucumis sativus]	[more]
KGN57340.1	8.2e-14	78.43	hypothetical protein Csa_3G180280 [Cucumis sativus]	[more]
XP_011651134.1	8.2e-14	78.43	PREDICTED: traB domain-containing protein isoform X2 [Cucumis sativus]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000293	Bhi08M000293	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21530:SF1	TRAB FAMILY PROTEIN	coord: 7..55
None	No IPR available	PANTHER	PTHR21530	PHEROMONE SHUTDOWN PROTEIN	coord: 7..55

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G000293	Cucurbita maxima (Rimu)	cmawgoB0589
Bhi08G000293	Cucurbita moschata (Rifu)	cmowgoB0252
Bhi08G000293	Cucurbita moschata (Rifu)	cmowgoB0586
Bhi08G000293	Cucurbita pepo (Zucchini)	cpewgoB0636
Bhi08G000293	Cucurbita pepo (Zucchini)	cpewgoB0708
Bhi08G000293	Bottle gourd (USVL1VR-Ls)	lsiwgoB093
Bhi08G000293	Melon (DHL92) v3.5.1	mewgoB145
Bhi08G000293	Watermelon (Charleston Gray)	wcgwgoB317
Bhi08G000293	Watermelon (97103) v2	wgowmbB469
Bhi08G000293	Watermelon (97103) v1	wgowmB522
Bhi08G000293	Silver-seed gourd	carwgoB0533
Bhi08G000293	Silver-seed gourd	carwgoB0860