Bhi08G000277 (gene) Wax gourd

NameBhi08G000277
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRibonuclease PH
Locationchr8 : 11559233 .. 11559421 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGGACCTACGAGCCAAGGGACAGTCTCAGGTAGACAGTTTCTACGGGCCATAGGCCTCCCAAAATGTAACGGAGGCGTGCAAAGGTTTCCTCGAGCCAGGCGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCTACTCGTCGAGCAGGGACGAAAGTCGGCCTTAG

mRNA sequence

ATGTCAGGACCTACGAGCCAAGGGACAGTCTCAGGTAGACAGTTTCTACGGGCCATAGGCCTCCCAAAATGTAACGGAGGCGTGCAAAGGTTTCCTCGAGCCAGGCGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCTACTCGTCGAGCAGGGACGAAAGTCGGCCTTAG

Coding sequence (CDS)

ATGTCAGGACCTACGAGCCAAGGGACAGTCTCAGGTAGACAGTTTCTACGGGCCATAGGCCTCCCAAAATGTAACGGAGGCGTGCAAAGGTTTCCTCGAGCCAGGCGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCTACTCGTCGAGCAGGGACGAAAGTCGGCCTTAG

Protein sequence

MSGPTSQGTVSGRQFLRAIGLPKCNGGVQRFPRARRRLALECKGRRELDCKTYSSSRDESRP
BLAST of Bhi08G000277 vs. TrEMBL
Match: tr|A0A0D2ZTA2|A0A0D2ZTA2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 3   GPTSQGTVSGRQFLRAIGLPKCNGGVQRFPRARRRLALECKGRRELDCKTYSSSRDESRP 62
           GPT QGTVSGRQFL  +GLPK NGGVQRFPRA RRLALECKGRRELDCKT+ SSRDESRP
Sbjct: 164 GPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRAGRRLALECKGRRELDCKTHPSSRDESRP 223

BLAST of Bhi08G000277 vs. TrEMBL
Match: tr|A0A078G4B3|A0A078G4B3_BRANA (BnaC09g30100D protein OS=Brassica napus OX=3708 GN=BnaC09g30100D PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 3   GPTSQGTVSGRQFLRAIGLPKCNGGVQRFPRARRRLALECKGRRELDCKTYSSSRDESRP 62
           GPT QGTVSGRQFL  +GLPK NGGVQRFPRA RRLALECKGRRELDCKT+ SSRDESRP
Sbjct: 112 GPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRAGRRLALECKGRRELDCKTHPSSRDESRP 171

BLAST of Bhi08G000277 vs. TrEMBL
Match: tr|A0A078E1F1|A0A078E1F1_BRANA (BnaC09g29110D protein OS=Brassica napus OX=3708 GN=BnaC09g29110D PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.5e-20
Identity = 51/60 (85.00%), Postives = 53/60 (88.33%), Query Frame = 0

Query: 3   GPTSQGTVSGRQFLRAIGLPKCNGGVQRFPRARRRLALECKGRRELDCKTYSSSRDESRP 62
           GPT QGTVSGRQFL  +GLPK NGGVQRFPRA RRLALECKGRR LDCKT+ SSRDESRP
Sbjct: 164 GPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRAGRRLALECKGRRGLDCKTHPSSRDESRP 223

BLAST of Bhi08G000277 vs. TrEMBL
Match: tr|A0A078G2W9|A0A078G2W9_BRANA (BnaC09g29220D protein OS=Brassica napus OX=3708 GN=BnaC09g29220D PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 3   GPTSQGTVSGRQFLRAIGLPKCNGGVQRFPRARRRLALECKGRRELDCKTYSSSRDE 60
           GPT QGTVSGRQFL  +GLPK NGGVQRFPRA RRLALECKGRRELDCKT+ SSRDE
Sbjct: 164 GPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRAGRRLALECKGRRELDCKTHPSSRDE 220

BLAST of Bhi08G000277 vs. TrEMBL
Match: tr|A0A200PP66|A0A200PP66_9MAGN (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8595g9 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-18
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 4   PTSQGTVSGRQFLRAIGLPKCNGGVQRFPRARRRLALECKGRRELDCKTYSSSRDES 61
           PT QGTVSGRQFL  +GLPK NGGVQRFPRA RRLALECKGRRELDCKT+ SSRDES
Sbjct: 50  PTGQGTVSGRQFLWGVGLPKGNGGVQRFPRAGRRLALECKGRRELDCKTHPSSRDES 106

BLAST of Bhi08G000277 vs. NCBI nr
Match: RDY14311.1 (hypothetical protein CR513_00630, partial [Mucuna pruriens])

HSP 1 Score: 107.5 bits (267), Expect = 1.7e-20
Identity = 52/59 (88.14%), Postives = 54/59 (91.53%), Query Frame = 0

Query: 4   PTSQGTVSGRQFLRAIGLPKCNGGVQRFPRARRRLALECKGRRELDCKTYSSSRDESRP 63
           PT QGTVSGRQFL  +GLPK NGGVQRFPRARRRLALECKGRRELDCKT+ SSRDESRP
Sbjct: 50  PTGQGTVSGRQFLWGVGLPKGNGGVQRFPRARRRLALECKGRRELDCKTHPSSRDESRP 108

BLAST of Bhi08G000277 vs. NCBI nr
Match: CDY20229.1 (BnaC09g30100D [Brassica napus])

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-20
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 3   GPTSQGTVSGRQFLRAIGLPKCNGGVQRFPRARRRLALECKGRRELDCKTYSSSRDESRP 62
           GPT QGTVSGRQFL  +GLPK NGGVQRFPRA RRLALECKGRRELDCKT+ SSRDESRP
Sbjct: 112 GPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRAGRRLALECKGRRELDCKTHPSSRDESRP 171

BLAST of Bhi08G000277 vs. NCBI nr
Match: CDY19655.1 (BnaC09g29110D [Brassica napus])

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-19
Identity = 51/60 (85.00%), Postives = 53/60 (88.33%), Query Frame = 0

Query: 3   GPTSQGTVSGRQFLRAIGLPKCNGGVQRFPRARRRLALECKGRRELDCKTYSSSRDESRP 62
           GPT QGTVSGRQFL  +GLPK NGGVQRFPRA RRLALECKGRR LDCKT+ SSRDESRP
Sbjct: 164 GPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRAGRRLALECKGRRGLDCKTHPSSRDESRP 223

BLAST of Bhi08G000277 vs. NCBI nr
Match: CDY19666.1 (BnaC09g29220D [Brassica napus])

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-18
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 3   GPTSQGTVSGRQFLRAIGLPKCNGGVQRFPRARRRLALECKGRRELDCKTYSSSRDE 60
           GPT QGTVSGRQFL  +GLPK NGGVQRFPRA RRLALECKGRRELDCKT+ SSRDE
Sbjct: 164 GPTGQGTVSGRQFLWGVGLPKGNGGVQRFPRAGRRLALECKGRRELDCKTHPSSRDE 220

BLAST of Bhi08G000277 vs. NCBI nr
Match: OVA00002.1 (hypothetical protein BVC80_8595g9 [Macleaya cordata])

HSP 1 Score: 100.5 bits (249), Expect = 2.1e-18
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 4   PTSQGTVSGRQFLRAIGLPKCNGGVQRFPRARRRLALECKGRRELDCKTYSSSRDES 61
           PT QGTVSGRQFL  +GLPK NGGVQRFPRA RRLALECKGRRELDCKT+ SSRDES
Sbjct: 50  PTGQGTVSGRQFLWGVGLPKGNGGVQRFPRAGRRLALECKGRRELDCKTHPSSRDES 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0D2ZTA2|A0A0D2ZTA2_BRAOL1.5e-2086.67Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1[more]
tr|A0A078G4B3|A0A078G4B3_BRANA1.5e-2086.67BnaC09g30100D protein OS=Brassica napus OX=3708 GN=BnaC09g30100D PE=4 SV=1[more]
tr|A0A078E1F1|A0A078E1F1_BRANA9.5e-2085.00BnaC09g29110D protein OS=Brassica napus OX=3708 GN=BnaC09g29110D PE=4 SV=1[more]
tr|A0A078G2W9|A0A078G2W9_BRANA1.1e-1885.96BnaC09g29220D protein OS=Brassica napus OX=3708 GN=BnaC09g29220D PE=4 SV=1[more]
tr|A0A200PP66|A0A200PP66_9MAGN1.4e-1885.96Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8595g9 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
RDY14311.11.7e-2088.14hypothetical protein CR513_00630, partial [Mucuna pruriens][more]
CDY20229.12.2e-2086.67BnaC09g30100D [Brassica napus][more]
CDY19655.11.4e-1985.00BnaC09g29110D [Brassica napus][more]
CDY19666.11.6e-1885.96BnaC09g29220D [Brassica napus][more]
OVA00002.12.1e-1885.96hypothetical protein BVC80_8595g9 [Macleaya cordata][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009579 thylakoid
molecular_function GO:0005524 ATP binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M000277Bhi08M000277mRNA