Bhi08G000153 (gene) Wax gourd

Overview
NameBhi08G000153
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionnucleolar complex protein 4 homolog
Locationchr8 : 6437418 .. 6437574 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGAATGTTAGTGAGAGTAAGAACGATGATTCAAAAAGTGAAGAGGTTGCTAAAGGCGTAGATGCTTCAGAGGTTGATGCTGATACACCCAACATGAAGCCAGGCATCGACCATTTTAACTATGAGGAAATTGATCCTATTAAATCTAGCACCTTGA

mRNA sequence

GAGAATGTTAGTGAGAGTAAGAACGATGATTCAAAAAGTGAAGAGGTTGCTAAAGGCGTAGATGCTTCAGAGGTTGATGCTGATACACCCAACATGAAGCCAGGCATCGACCATTTTAACTATGAGGAAATTGATCCTATTAAATCTAGCACCTTGA

Coding sequence (CDS)

GAGAATGTTAGTGAGAGTAAGAACGATGATTCAAAAAGTGAAGAGGTTGCTAAAGGCGTAGATGCTTCAGAGGTTGATGCTGATACACCCAACATGAAGCCAGGCATCGACCATTTTAACTATGAGGAAATTGATCCTATTAAATCTAGCACCTTGA

Protein sequence

ENVSESKNDDSKSEEVAKGVDASEVDADTPNMKPGIDHFNYEEIDPIKSSTL
Homology
[Close]
BLAST of Bhi08G000153 vs. TrEMBL
Match: tr|A0A1S3BIC0|A0A1S3BIC0_CUCME (nucleolar complex protein 4 homolog OS=Cucumis melo OX=3656 GN=LOC103490206 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.9e-15
Identity = 45/52 (86.54%), Postives = 45/52 (86.54%), Query Frame = 0 

Query: 1   ENVSESKNDDSKSEEVAKGVDASEVDADTPNMKPGIDHFNYEEIDPIKSSTL 53
           ENV ESKNDDS SEE AKG DASEVDADTP MKPGIDHFNYEE DPIKSS L
Sbjct: 441 ENVGESKNDDSTSEEAAKGTDASEVDADTPKMKPGIDHFNYEETDPIKSSAL 492

[Close]
BLAST of Bhi08G000153 vs. TrEMBL
Match: tr|A0A0A0K685|A0A0A0K685_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G025180 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-10
Identity = 40/52 (76.92%), Postives = 41/52 (78.85%), Query Frame = 0 

Query: 1   ENVSESKNDDSKSEEVAKGVDASEVDADTPNMKPGIDHFNYEEIDPIKSSTL 53
           ENVSESKND+S SEE AKG      DADTP MKPGIDHFNYEE DPIKSS L
Sbjct: 444 ENVSESKNDNSTSEEAAKG-----TDADTPKMKPGIDHFNYEEADPIKSSAL 490

[Close]
BLAST of Bhi08G000153 vs. NCBI nr
Match: XP_008447831.1 (PREDICTED: nucleolar complex protein 4 homolog [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 9.0e-15
Identity = 45/52 (86.54%), Postives = 45/52 (86.54%), Query Frame = 0 

Query: 1   ENVSESKNDDSKSEEVAKGVDASEVDADTPNMKPGIDHFNYEEIDPIKSSTL 53
           ENV ESKNDDS SEE AKG DASEVDADTP MKPGIDHFNYEE DPIKSS L
Sbjct: 441 ENVGESKNDDSTSEEAAKGTDASEVDADTPKMKPGIDHFNYEETDPIKSSAL 492

[Close]
BLAST of Bhi08G000153 vs. NCBI nr
Match: XP_022952163.1 (nucleolar complex protein 4 homolog [Cucurbita moschata])

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-14
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1   ENVSESKNDDSKSEEVAKGVDASEVDADTPNMKPGIDHFNYEEIDPIKSSTL 53
           ENVSESKNDDS S+EVAKG DASEV+ADTPNMKPGID FNYEE DPIKSS L
Sbjct: 443 ENVSESKNDDSTSKEVAKGTDASEVEADTPNMKPGIDRFNYEETDPIKSSAL 494

[Close]
BLAST of Bhi08G000153 vs. NCBI nr
Match: XP_023554434.1 (nucleolar complex protein 4 homolog B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-14
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1   ENVSESKNDDSKSEEVAKGVDASEVDADTPNMKPGIDHFNYEEIDPIKSSTL 53
           ENVSESKNDDS S+EVAKG DASEV+ADTPNMKPGID FNYEE DPIKSS L
Sbjct: 444 ENVSESKNDDSTSKEVAKGTDASEVEADTPNMKPGIDRFNYEETDPIKSSAL 495

[Close]
BLAST of Bhi08G000153 vs. NCBI nr
Match: XP_022969033.1 (nucleolar complex protein 4 homolog B [Cucurbita maxima])

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-13
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 1   ENVSESKNDDSKSEEVAKGVDASEVDADTPNMKPGIDHFNYEEIDPIKSSTL 53
           ENVSESKNDDS S+EVAKG DASEV+ADT NMKPGID FNYEE DPIKSS L
Sbjct: 443 ENVSESKNDDSTSKEVAKGTDASEVEADTLNMKPGIDRFNYEETDPIKSSAL 494

[Close]
BLAST of Bhi08G000153 vs. NCBI nr
Match: XP_022136138.1 (nucleolar complex protein 4 homolog [Momordica charantia] >XP_022136139.1 nucleolar complex protein 4 homolog [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 7.1e-12
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0 

Query: 1   ENVSESKNDDSKSEEVAKGVDASEVDADTPNMKPGIDHFNYEEIDPIKSSTL 53
           EN++ESK D+S  EEVA+G DAS VDAD PN KPGIDHFNYEE DPIKSS L
Sbjct: 436 ENINESKKDESTDEEVARGTDASGVDADAPNRKPGIDHFNYEETDPIKSSAL 487

The following BLAST results are available for this feature:
BLAST of Bhi08G000153 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi08G000153 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi08G000153 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BIC0|A0A1S3BIC0_CUCME5.9e-1586.54nucleolar complex protein 4 homolog OS=Cucumis melo OX=3656 GN=LOC103490206 PE=4... [more]
tr|A0A0A0K685|A0A0A0K685_CUCSA1.5e-1076.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G025180 PE=4 SV=1[more]
BLAST of Bhi08G000153 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008447831.19.0e-1586.54PREDICTED: nucleolar complex protein 4 homolog [Cucumis melo][more]
XP_022952163.11.5e-1486.54nucleolar complex protein 4 homolog [Cucurbita moschata][more]
XP_023554434.11.5e-1486.54nucleolar complex protein 4 homolog B [Cucurbita pepo subsp. pepo][more]
XP_022969033.12.2e-1384.62nucleolar complex protein 4 homolog B [Cucurbita maxima][more]
XP_022136138.17.1e-1275.00nucleolar complex protein 4 homolog [Momordica charantia] >XP_022136139.1 nucleo... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0030692 Noc4p-Nop14p complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0032040 small-subunit processome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M000153Bhi08M000153mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi08G000153Cucumber (Gy14) v2cgybwgoB046
Bhi08G000153Cucumber (Gy14) v2cgybwgoB606
Bhi08G000153Cucurbita maxima (Rimu)cmawgoB0220
Bhi08G000153Cucurbita maxima (Rimu)cmawgoB0267
Bhi08G000153Cucurbita maxima (Rimu)cmawgoB0704
Bhi08G000153Cucurbita moschata (Rifu)cmowgoB0214
Bhi08G000153Cucurbita moschata (Rifu)cmowgoB0259
Bhi08G000153Cucurbita moschata (Rifu)cmowgoB0697
Bhi08G000153Cucurbita pepo (Zucchini)cpewgoB0373
Bhi08G000153Cucurbita pepo (Zucchini)cpewgoB0636
Bhi08G000153Cucurbita pepo (Zucchini)cpewgoB1056
Bhi08G000153Wild cucumber (PI 183967)cpiwgoB049
Bhi08G000153Wild cucumber (PI 183967)cpiwgoB643
Bhi08G000153Cucumber (Chinese Long) v3cucwgoB051
Bhi08G000153Cucumber (Chinese Long) v3cucwgoB657
Bhi08G000153Cucumber (Chinese Long) v2cuwgoB049
Bhi08G000153Cucumber (Chinese Long) v2cuwgoB636
Bhi08G000153Bottle gourd (USVL1VR-Ls)lsiwgoB095
Bhi08G000153Bottle gourd (USVL1VR-Ls)lsiwgoB337
Bhi08G000153Melon (DHL92) v3.6.1medwgoB145
Bhi08G000153Melon (DHL92) v3.6.1medwgoB176
Bhi08G000153Melon (DHL92) v3.5.1mewgoB174
Bhi08G000153Watermelon (Charleston Gray)wcgwgoB243
Bhi08G000153Watermelon (Charleston Gray)wcgwgoB316
Bhi08G000153Watermelon (97103) v2wgowmbB461
Bhi08G000153Watermelon (97103) v2wgowmbB468
Bhi08G000153Watermelon (97103) v1wgowmB499
Bhi08G000153Watermelon (97103) v1wgowmB521
Bhi08G000153Silver-seed gourdcarwgoB0216
Bhi08G000153Silver-seed gourdcarwgoB0427
Bhi08G000153Wax gourdwgowgoB084