Bhi08G000152 (gene) Wax gourd

Overview
NameBhi08G000152
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionnucleolar complex protein 4 homolog
Locationchr8 : 6436260 .. 6436412 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGAAAAAGAGACTGAAGCGAGTCCCCCTGGCATTCTACCAAGCACCCTCTACCACCTTGTTTTCGGAGTCTGATTTCACTGGCTGGAGTTTCGATCACGAACACAGTGAGAAGAATATTAATGGTAGTGATCATCTTTTGGCAAAAAGATAG

mRNA sequence

TTGAAAAAGAGACTGAAGCGAGTCCCCCTGGCATTCTACCAAGCACCCTCTACCACCTTGTTTTCGGAGTCTGATTTCACTGGCTGGAGTTTCGATCACGAACACAGTGAGAAGAATATTAATGGTAGTGATCATCTTTTGGCAAAAAGATAG

Coding sequence (CDS)

TTGAAAAAGAGACTGAAGCGAGTCCCCCTGGCATTCTACCAAGCACCCTCTACCACCTTGTTTTCGGAGTCTGATTTCACTGGCTGGAGTTTCGATCACGAACACAGTGAGAAGAATATTAATGGTAGTGATCATCTTTTGGCAAAAAGATAG

Protein sequence

LKKRLKRVPLAFYQAPSTTLFSESDFTGWSFDHEHSEKNINGSDHLLAKR
Homology
[Close]
BLAST of Bhi08G000152 vs. TAIR10
Match: AT2G17250.1 (CCAAT-binding factor)

HSP 1 Score: 45.1 bits (105), Expect = 1.5e-05
Identity = 17/31 (54.84%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 1   LKKRLKRVPLAFYQAPSTTLFSESDFTGWSF 32
           +++R+K+VPLAFY+   T+LF++SDF GW+F
Sbjct: 538 IRRRVKQVPLAFYKTVPTSLFADSDFPGWTF 568

[Close]
BLAST of Bhi08G000152 vs. TrEMBL
Match: tr|A0A0A0K685|A0A0A0K685_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G025180 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.7e-16
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 1   LKKRLKRVPLAFYQAPSTTLFSESDFTGWSFDHEHSEKNINGSDHLLAKR 51
           LKK+LKRVPLAFYQAP TTLFSESDF GWSFD+EHSEKNI+ SDHL AKR
Sbjct: 546 LKKKLKRVPLAFYQAPPTTLFSESDFAGWSFDNEHSEKNIDSSDHLSAKR 595

[Close]
BLAST of Bhi08G000152 vs. TrEMBL
Match: tr|A0A1S3BIC0|A0A1S3BIC0_CUCME (nucleolar complex protein 4 homolog OS=Cucumis melo OX=3656 GN=LOC103490206 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.7e-15
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 0 

Query: 1   LKKRLKRVPLAFYQAPSTTLFSESDFTGWSFDHEHSEK-NINGSDHLLAKR 51
           LKK+LKRVPLAFYQAP TTLFSESDF GWSFD+EHS+K NI+GSDHL AKR
Sbjct: 548 LKKKLKRVPLAFYQAPPTTLFSESDFVGWSFDYEHSDKNNIDGSDHLSAKR 598

[Close]
BLAST of Bhi08G000152 vs. TrEMBL
Match: tr|A0A2P5DPP8|A0A2P5DPP8_PARAD (Nucleolar complex protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_045910 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.7e-06
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 1   LKKRLKRVPLAFYQAPSTTLFSESDFTGWSFDHEHSEKNINGSDHLLAKR 51
           +++R+K+VPLAFY+A  T+LFSESDF GW+F HE     +   DH +AKR
Sbjct: 547 IRRRVKQVPLAFYKATPTSLFSESDFAGWTFKHE----ELREDDHTVAKR 592

[Close]
BLAST of Bhi08G000152 vs. TrEMBL
Match: tr|A0A067KHD3|A0A067KHD3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08980 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-05
Identity = 24/40 (60.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 1   LKKRLKRVPLAFYQAPSTTLFSESDFTGWSFDHEHSEKNI 41
           L++R+K+VPLAFY+A  T LFSESDF GW+F +E S++N+
Sbjct: 566 LRRRVKQVPLAFYKATPTLLFSESDFAGWTFKYEESKENV 605

[Close]
BLAST of Bhi08G000152 vs. TrEMBL
Match: tr|B9SYR1|B9SYR1_RICCO (Nucleolar complex protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0035800 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.4e-05
Identity = 23/39 (58.97%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 1   LKKRLKRVPLAFYQAPSTTLFSESDFTGWSFDHEHSEKN 40
           L++R+K+VPLAF++A  T+LFSESDF GW+F +E S++N
Sbjct: 588 LRRRVKQVPLAFFKATPTSLFSESDFAGWTFKYEQSKRN 626

[Close]
BLAST of Bhi08G000152 vs. NCBI nr
Match: XP_011658634.1 (PREDICTED: nucleolar complex protein 4 homolog [Cucumis sativus] >KGN43346.1 hypothetical protein Csa_7G025180 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 1.0e-15
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 1   LKKRLKRVPLAFYQAPSTTLFSESDFTGWSFDHEHSEKNINGSDHLLAKR 51
           LKK+LKRVPLAFYQAP TTLFSESDF GWSFD+EHSEKNI+ SDHL AKR
Sbjct: 546 LKKKLKRVPLAFYQAPPTTLFSESDFAGWSFDNEHSEKNIDSSDHLSAKR 595

[Close]
BLAST of Bhi08G000152 vs. NCBI nr
Match: XP_008447831.1 (PREDICTED: nucleolar complex protein 4 homolog [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 8.6e-15
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 0 

Query: 1   LKKRLKRVPLAFYQAPSTTLFSESDFTGWSFDHEHSEK-NINGSDHLLAKR 51
           LKK+LKRVPLAFYQAP TTLFSESDF GWSFD+EHS+K NI+GSDHL AKR
Sbjct: 548 LKKKLKRVPLAFYQAPPTTLFSESDFVGWSFDYEHSDKNNIDGSDHLSAKR 598

[Close]
BLAST of Bhi08G000152 vs. NCBI nr
Match: XP_022136138.1 (nucleolar complex protein 4 homolog [Momordica charantia] >XP_022136139.1 nucleolar complex protein 4 homolog [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-14
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0 

Query: 1   LKKRLKRVPLAFYQAPSTTLFSESDFTGWSFDHEHSEKNINGSDHLLAKR 51
           LKK++KRVPLAFYQA  TTLFSESDFTGWSFDH+HSE NI+ SDHL AKR
Sbjct: 543 LKKKMKRVPLAFYQAIPTTLFSESDFTGWSFDHKHSENNIDDSDHLSAKR 592

[Close]
BLAST of Bhi08G000152 vs. NCBI nr
Match: XP_022969033.1 (nucleolar complex protein 4 homolog B [Cucurbita maxima])

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-14
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 1   LKKRLKRVPLAFYQAPSTTLFSESDFTGWSFDHEHSEKNINGSDHLLAKR 51
           LKK++KRVPLAFYQA  T+LFSESDF GWSF+HEHSEKNI+GSDHL AKR
Sbjct: 550 LKKKMKRVPLAFYQAIPTSLFSESDFPGWSFNHEHSEKNIDGSDHLPAKR 599

[Close]
BLAST of Bhi08G000152 vs. NCBI nr
Match: XP_022952163.1 (nucleolar complex protein 4 homolog [Cucurbita moschata])

HSP 1 Score: 85.1 bits (209), Expect = 7.3e-14
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 0 

Query: 1   LKKRLKRVPLAFYQAPSTTLFSESDFTGWSFDHEHSEKNINGSDHLLAKR 51
           LKK++KRVPLAFYQA  T+LFS SDF GWSF+HEHSEKNI+GSDHL AKR
Sbjct: 550 LKKKMKRVPLAFYQAIPTSLFSASDFPGWSFNHEHSEKNIDGSDHLPAKR 599

The following BLAST results are available for this feature:
BLAST of Bhi08G000152 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi08G000152 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G17250.11.5e-0554.84CCAAT-binding factor[more]
BLAST of Bhi08G000152 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K685|A0A0A0K685_CUCSA6.7e-1686.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G025180 PE=4 SV=1[more]
tr|A0A1S3BIC0|A0A1S3BIC0_CUCME5.7e-1584.31nucleolar complex protein 4 homolog OS=Cucumis melo OX=3656 GN=LOC103490206 PE=4... [more]
tr|A0A2P5DPP8|A0A2P5DPP8_PARAD3.7e-0654.00Nucleolar complex protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_045910 ... [more]
tr|A0A067KHD3|A0A067KHD3_JATCU1.4e-0560.00Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08980 PE=4 SV=1[more]
tr|B9SYR1|B9SYR1_RICCO5.4e-0558.97Nucleolar complex protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0035800 ... [more]
BLAST of Bhi08G000152 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011658634.11.0e-1586.00PREDICTED: nucleolar complex protein 4 homolog [Cucumis sativus] >KGN43346.1 hyp... [more]
XP_008447831.18.6e-1584.31PREDICTED: nucleolar complex protein 4 homolog [Cucumis melo][more]
XP_022136138.11.5e-1482.00nucleolar complex protein 4 homolog [Momordica charantia] >XP_022136139.1 nucleo... [more]
XP_022969033.11.5e-1482.00nucleolar complex protein 4 homolog B [Cucurbita maxima][more]
XP_022952163.17.3e-1480.00nucleolar complex protein 4 homolog [Cucurbita moschata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0030692 Noc4p-Nop14p complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0032040 small-subunit processome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M000152Bhi08M000152mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi08G000152Wax gourdwgowgoB084
Bhi08G000152Cucumber (Gy14) v2cgybwgoB046
Bhi08G000152Cucumber (Gy14) v2cgybwgoB606
Bhi08G000152Cucurbita maxima (Rimu)cmawgoB0220
Bhi08G000152Cucurbita maxima (Rimu)cmawgoB0267
Bhi08G000152Cucurbita maxima (Rimu)cmawgoB0704
Bhi08G000152Cucurbita moschata (Rifu)cmowgoB0214
Bhi08G000152Cucurbita moschata (Rifu)cmowgoB0259
Bhi08G000152Cucurbita moschata (Rifu)cmowgoB0697
Bhi08G000152Cucurbita pepo (Zucchini)cpewgoB0373
Bhi08G000152Cucurbita pepo (Zucchini)cpewgoB0636
Bhi08G000152Cucurbita pepo (Zucchini)cpewgoB1056
Bhi08G000152Wild cucumber (PI 183967)cpiwgoB049
Bhi08G000152Wild cucumber (PI 183967)cpiwgoB643
Bhi08G000152Cucumber (Chinese Long) v3cucwgoB051
Bhi08G000152Cucumber (Chinese Long) v3cucwgoB657
Bhi08G000152Cucumber (Chinese Long) v2cuwgoB049
Bhi08G000152Cucumber (Chinese Long) v2cuwgoB636
Bhi08G000152Bottle gourd (USVL1VR-Ls)lsiwgoB095
Bhi08G000152Bottle gourd (USVL1VR-Ls)lsiwgoB337
Bhi08G000152Melon (DHL92) v3.6.1medwgoB145
Bhi08G000152Melon (DHL92) v3.6.1medwgoB176
Bhi08G000152Melon (DHL92) v3.5.1mewgoB174
Bhi08G000152Watermelon (Charleston Gray)wcgwgoB243
Bhi08G000152Watermelon (Charleston Gray)wcgwgoB316
Bhi08G000152Watermelon (97103) v2wgowmbB461
Bhi08G000152Watermelon (97103) v2wgowmbB468
Bhi08G000152Watermelon (97103) v1wgowmB499
Bhi08G000152Watermelon (97103) v1wgowmB521
Bhi08G000152Silver-seed gourdcarwgoB0216
Bhi08G000152Silver-seed gourdcarwgoB0427