Bhi08G000132 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G000132
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Protein FAR1-RELATED SEQUENCE 11
Location	chr8 : 5507310 .. 5507792 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATAAAATACACTCCTGATCCTTGGTTGGCTATTTACTCAACTACAGATAATGAGAAACCTACGTTTGGTTTGGATGCAAGTATGATATTGGTTTCTCCTTTCCAGATACCAGATAGCTATCTTCCCGTACGATGGAGAAGGATAAGCATGCCCTGGGCAAAGCTCCTTCCAAGTACTGAAATGATCGATCATGCTGAAAGGATTCAGGTGTTGCAGAGCATGGTGACAAATCTTGTTACTACTGAATCTGCAAAGTCCAGAGAGAGGCTTGATATCACAACCGAGCAAGTGTCGCTCCTCTTATCCATCCCGCACGGCGCGAGGGAACATCCCACATCATTGCCAGCCTCTAAAGGGATGTTTCTACCCTACACAGCAACTTGTAACTTTTGTTGTAAACTAAAACTAGGAAACAGAGTGAGTTACGGGAAGAACATTCTGCATGGAGCGAGGCCGAGTGATCAGTTTAAAGGCTAA

mRNA sequence

ATGTCCATAAAATACACTCCTGATCCTTGGTTGGCTATTTACTCAACTACAGATAATGAGAAACCTACGTTTGGTTTGGATGCAAGTATGATATTGGTTTCTCCTTTCCAGATACCAGATAGCTATCTTCCCGTACGATGGAGAAGGATAAGCATGCCCTGGGCAAAGCTCCTTCCAAGTACTGAAATGATCGATCATGCTGAAAGGATTCAGGTGTTGCAGAGCATGGTGACAAATCTTGTTACTACTGAATCTGCAAAGTCCAGAGAGAGGCTTGATATCACAACCGAGCAAGTGTCGCTCCTCTTATCCATCCCGCACGGCGCGAGGGAACATCCCACATCATTGCCAGCCTCTAAAGGGATGTTTCTACCCTACACAGCAACTTGTAACTTTTGTTGTAAACTAAAACTAGGAAACAGAGTGAGTTACGGGAAGAACATTCTGCATGGAGCGAGGCCGAGTGATCAGTTTAAAGGCTAA

Coding sequence (CDS)

ATGTCCATAAAATACACTCCTGATCCTTGGTTGGCTATTTACTCAACTACAGATAATGAGAAACCTACGTTTGGTTTGGATGCAAGTATGATATTGGTTTCTCCTTTCCAGATACCAGATAGCTATCTTCCCGTACGATGGAGAAGGATAAGCATGCCCTGGGCAAAGCTCCTTCCAAGTACTGAAATGATCGATCATGCTGAAAGGATTCAGGTGTTGCAGAGCATGGTGACAAATCTTGTTACTACTGAATCTGCAAAGTCCAGAGAGAGGCTTGATATCACAACCGAGCAAGTGTCGCTCCTCTTATCCATCCCGCACGGCGCGAGGGAACATCCCACATCATTGCCAGCCTCTAAAGGGATGTTTCTACCCTACACAGCAACTTGTAACTTTTGTTGTAAACTAAAACTAGGAAACAGAGTGAGTTACGGGAAGAACATTCTGCATGGAGCGAGGCCGAGTGATCAGTTTAAAGGCTAA

Protein sequence

MSIKYTPDPWLAIYSTTDNEKPTFGLDASMILVSPFQIPDSYLPVRWRRISMPWAKLLPSTEMIDHAERIQVLQSMVTNLVTTESAKSRERLDITTEQVSLLLSIPHGAREHPTSLPASKGMFLPYTATCNFCCKLKLGNRVSYGKNILHGARPSDQFKG

Homology

[Close]

BLAST of Bhi08G000132 vs. Swiss-Prot
Match: sp|Q9SY66|FRS11_ARATH (Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana OX=3702 GN=FRS11 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.5e-15
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 36  FQIPDSYLPVRWRRISMPWAKLLPSTEMIDHAERIQVLQSMVTNLVTTESAKSRERLDIT 95
           FQ+PD YLP+RWRRIS  ++K   S    DH ER+Q+LQ++V+ LV +ESAKS+ERLDI 
Sbjct: 591 FQVPDRYLPLRWRRISTSFSKTFRSNAE-DHGERVQLLQNLVSTLV-SESAKSKERLDIA 650

Query: 96  TEQVSLLLSIPHGAREHPTS 116
           TEQ S+LLS     RE P S
Sbjct: 651 TEQTSILLS---RIREQPVS 665

[Close]

BLAST of Bhi08G000132 vs. TAIR10
Match: AT1G10240.1 (FAR1-related sequence 11)

HSP 1 Score: 81.6 bits (200), Expect = 4.7e-16
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 36  FQIPDSYLPVRWRRISMPWAKLLPSTEMIDHAERIQVLQSMVTNLVTTESAKSRERLDIT 95
           FQ+PD YLP+RWRRIS  ++K   S    DH ER+Q+LQ++V+ LV +ESAKS+ERLDI 
Sbjct: 591 FQVPDRYLPLRWRRISTSFSKTFRSNAE-DHGERVQLLQNLVSTLV-SESAKSKERLDIA 650

Query: 96  TEQVSLLLSIPHGAREHPTS 116
           TEQ S+LLS     RE P S
Sbjct: 651 TEQTSILLS---RIREQPVS 665

[Close]

BLAST of Bhi08G000132 vs. TrEMBL
Match: tr|A0A1S4E549|A0A1S4E549_CUCME (protein FAR1-RELATED SEQUENCE 11 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502896 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.9e-25
Identity = 70/85 (82.35%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 36  FQIPDSYLPVRWRRISMPWAKLLPSTEMIDHAERIQVLQSMVTNLVTTESAKSRERLDIT 95
           FQIPDSYLP+RWRRISMP AKLLPST   DHAERIQ+LQSMVTNLV TESAKSRERLDI 
Sbjct: 648 FQIPDSYLPIRWRRISMPSAKLLPSTTN-DHAERIQLLQSMVTNLV-TESAKSRERLDIA 707

Query: 96  TEQVSLLLSIPHGAREHPTSLPASK 121
           TEQVSLLLS     REHPTSLP S+
Sbjct: 708 TEQVSLLLS---RVREHPTSLPGSR 727

[Close]

BLAST of Bhi08G000132 vs. TrEMBL
Match: tr|A0A1S4E547|A0A1S4E547_CUCME (protein FAR1-RELATED SEQUENCE 11 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103502896 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.9e-25
Identity = 70/85 (82.35%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 36  FQIPDSYLPVRWRRISMPWAKLLPSTEMIDHAERIQVLQSMVTNLVTTESAKSRERLDIT 95
           FQIPDSYLP+RWRRISMP AKLLPST   DHAERIQ+LQSMVTNLV TESAKSRERLDI 
Sbjct: 592 FQIPDSYLPIRWRRISMPSAKLLPSTTN-DHAERIQLLQSMVTNLV-TESAKSRERLDIA 651

Query: 96  TEQVSLLLSIPHGAREHPTSLPASK 121
           TEQVSLLLS     REHPTSLP S+
Sbjct: 652 TEQVSLLLS---RVREHPTSLPGSR 671

[Close]

BLAST of Bhi08G000132 vs. TrEMBL
Match: tr|A0A1S4E5V1|A0A1S4E5V1_CUCME (protein FAR1-RELATED SEQUENCE 11 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502896 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.9e-25
Identity = 70/85 (82.35%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 36  FQIPDSYLPVRWRRISMPWAKLLPSTEMIDHAERIQVLQSMVTNLVTTESAKSRERLDIT 95
           FQIPDSYLP+RWRRISMP AKLLPST   DHAERIQ+LQSMVTNLV TESAKSRERLDI 
Sbjct: 647 FQIPDSYLPIRWRRISMPSAKLLPSTTN-DHAERIQLLQSMVTNLV-TESAKSRERLDIA 706

Query: 96  TEQVSLLLSIPHGAREHPTSLPASK 121
           TEQVSLLLS     REHPTSLP S+
Sbjct: 707 TEQVSLLLS---RVREHPTSLPGSR 726

[Close]

BLAST of Bhi08G000132 vs. TrEMBL
Match: tr|A0A0A0KIN5|A0A0A0KIN5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003620 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.9e-25
Identity = 70/85 (82.35%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 36  FQIPDSYLPVRWRRISMPWAKLLPSTEMIDHAERIQVLQSMVTNLVTTESAKSRERLDIT 95
           FQIPDSYLP+RWRRISMP AKLLPST   DHAERIQ+LQSMVTNLV TESAKSRERLDI 
Sbjct: 126 FQIPDSYLPIRWRRISMPSAKLLPSTTN-DHAERIQLLQSMVTNLV-TESAKSRERLDIA 185

Query: 96  TEQVSLLLSIPHGAREHPTSLPASK 121
           TEQVSLLLS     REHPTSLP S+
Sbjct: 186 TEQVSLLLS---RVREHPTSLPGSR 205

[Close]

BLAST of Bhi08G000132 vs. TrEMBL
Match: tr|A0A2P6PCK3|A0A2P6PCK3_ROSCH (Putative transcription factor FAR family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0219621 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.1e-18
Identity = 60/85 (70.59%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 36  FQIPDSYLPVRWRRISMPWAKLLPSTEMIDHAERIQVLQSMVTNLVTTESAKSRERLDIT 95
           FQIPD YLPVRWRRISMP AKLL S    DHAERIQ+LQSMV+ LV TES+KSRERLDI 
Sbjct: 591 FQIPDRYLPVRWRRISMPSAKLLHSFPS-DHAERIQLLQSMVSTLV-TESSKSRERLDIA 650

Query: 96  TEQVSLLLSIPHGAREHPTSLPASK 121
           TEQVS+LLS     RE P SL +++
Sbjct: 651 TEQVSILLS---QIREQPVSLQSTR 670

[Close]

BLAST of Bhi08G000132 vs. NCBI nr
Match: XP_016903356.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X3 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 5.9e-25
Identity = 70/85 (82.35%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 36  FQIPDSYLPVRWRRISMPWAKLLPSTEMIDHAERIQVLQSMVTNLVTTESAKSRERLDIT 95
           FQIPDSYLP+RWRRISMP AKLLPST   DHAERIQ+LQSMVTNLV TESAKSRERLDI 
Sbjct: 592 FQIPDSYLPIRWRRISMPSAKLLPSTTN-DHAERIQLLQSMVTNLV-TESAKSRERLDIA 651

Query: 96  TEQVSLLLSIPHGAREHPTSLPASK 121
           TEQVSLLLS     REHPTSLP S+
Sbjct: 652 TEQVSLLLS---RVREHPTSLPGSR 671

[Close]

BLAST of Bhi08G000132 vs. NCBI nr
Match: KGN49570.1 (hypothetical protein Csa_5G003620 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 5.9e-25
Identity = 70/85 (82.35%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 36  FQIPDSYLPVRWRRISMPWAKLLPSTEMIDHAERIQVLQSMVTNLVTTESAKSRERLDIT 95
           FQIPDSYLP+RWRRISMP AKLLPST   DHAERIQ+LQSMVTNLV TESAKSRERLDI 
Sbjct: 126 FQIPDSYLPIRWRRISMPSAKLLPSTTN-DHAERIQLLQSMVTNLV-TESAKSRERLDIA 185

Query: 96  TEQVSLLLSIPHGAREHPTSLPASK 121
           TEQVSLLLS     REHPTSLP S+
Sbjct: 186 TEQVSLLLS---RVREHPTSLPGSR 205

[Close]

BLAST of Bhi08G000132 vs. NCBI nr
Match: XP_011654451.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 11 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 5.9e-25
Identity = 70/85 (82.35%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 36  FQIPDSYLPVRWRRISMPWAKLLPSTEMIDHAERIQVLQSMVTNLVTTESAKSRERLDIT 95
           FQIPDSYLP+RWRRISMP AKLLPST   DHAERIQ+LQSMVTNLV TESAKSRERLDI 
Sbjct: 592 FQIPDSYLPIRWRRISMPSAKLLPSTTN-DHAERIQLLQSMVTNLV-TESAKSRERLDIA 651

Query: 96  TEQVSLLLSIPHGAREHPTSLPASK 121
           TEQVSLLLS     REHPTSLP S+
Sbjct: 652 TEQVSLLLS---RVREHPTSLPGSR 671

[Close]

BLAST of Bhi08G000132 vs. NCBI nr
Match: XP_016903353.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1 [Cucumis melo] >XP_016903354.1 PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 5.9e-25
Identity = 70/85 (82.35%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 36  FQIPDSYLPVRWRRISMPWAKLLPSTEMIDHAERIQVLQSMVTNLVTTESAKSRERLDIT 95
           FQIPDSYLP+RWRRISMP AKLLPST   DHAERIQ+LQSMVTNLV TESAKSRERLDI 
Sbjct: 648 FQIPDSYLPIRWRRISMPSAKLLPSTTN-DHAERIQLLQSMVTNLV-TESAKSRERLDIA 707

Query: 96  TEQVSLLLSIPHGAREHPTSLPASK 121
           TEQVSLLLS     REHPTSLP S+
Sbjct: 708 TEQVSLLLS---RVREHPTSLPGSR 727

[Close]

BLAST of Bhi08G000132 vs. NCBI nr
Match: XP_016903355.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X2 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 5.9e-25
Identity = 70/85 (82.35%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 36  FQIPDSYLPVRWRRISMPWAKLLPSTEMIDHAERIQVLQSMVTNLVTTESAKSRERLDIT 95
           FQIPDSYLP+RWRRISMP AKLLPST   DHAERIQ+LQSMVTNLV TESAKSRERLDI 
Sbjct: 647 FQIPDSYLPIRWRRISMPSAKLLPSTTN-DHAERIQLLQSMVTNLV-TESAKSRERLDIA 706

Query: 96  TEQVSLLLSIPHGAREHPTSLPASK 121
           TEQVSLLLS     REHPTSLP S+
Sbjct: 707 TEQVSLLLS---RVREHPTSLPGSR 726

The following BLAST results are available for this feature:

BLAST of Bhi08G000132 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SY66\|FRS11_ARATH	8.5e-15	57.50	Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana OX=3702 GN=FRS11 PE=1 S...	[more]

BLAST of Bhi08G000132 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10240.1	4.7e-16	57.50	FAR1-related sequence 11	[more]

BLAST of Bhi08G000132 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E549\|A0A1S4E549_CUCME	3.9e-25	82.35	protein FAR1-RELATED SEQUENCE 11 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502...	[more]
tr\|A0A1S4E547\|A0A1S4E547_CUCME	3.9e-25	82.35	protein FAR1-RELATED SEQUENCE 11 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103502...	[more]
tr\|A0A1S4E5V1\|A0A1S4E5V1_CUCME	3.9e-25	82.35	protein FAR1-RELATED SEQUENCE 11 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502...	[more]
tr\|A0A0A0KIN5\|A0A0A0KIN5_CUCSA	3.9e-25	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003620 PE=4 SV=1	[more]
tr\|A0A2P6PCK3\|A0A2P6PCK3_ROSCH	2.1e-18	70.59	Putative transcription factor FAR family OS=Rosa chinensis OX=74649 GN=RchiOBHm_...	[more]

BLAST of Bhi08G000132 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903356.1	5.9e-25	82.35	PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X3 [Cucumis melo]	[more]
KGN49570.1	5.9e-25	82.35	hypothetical protein Csa_5G003620 [Cucumis sativus]	[more]
XP_011654451.1	5.9e-25	82.35	PREDICTED: protein FAR1-RELATED SEQUENCE 11 [Cucumis sativus]	[more]
XP_016903353.1	5.9e-25	82.35	PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1 [Cucumis melo] >XP_016903...	[more]
XP_016903355.1	5.9e-25	82.35	PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR031052	FHY3/FAR1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000132	Bhi08M000132	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31669:SF135	PROTEIN FAR1-RELATED SEQUENCE 11	coord: 35..118
IPR031052	FHY3/FAR1 family	PANTHER	PTHR31669	FAMILY NOT NAMED	coord: 35..118

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G000132	Cucumber (Gy14) v1	cgywgoB422
Bhi08G000132	Cucumber (Gy14) v2	cgybwgoB046
Bhi08G000132	Cucurbita maxima (Rimu)	cmawgoB0220
Bhi08G000132	Cucurbita maxima (Rimu)	cmawgoB0267
Bhi08G000132	Cucurbita moschata (Rifu)	cmowgoB0214
Bhi08G000132	Cucurbita moschata (Rifu)	cmowgoB0259
Bhi08G000132	Cucurbita pepo (Zucchini)	cpewgoB0636
Bhi08G000132	Cucurbita pepo (Zucchini)	cpewgoB1056
Bhi08G000132	Wild cucumber (PI 183967)	cpiwgoB049
Bhi08G000132	Cucumber (Chinese Long) v3	cucwgoB051
Bhi08G000132	Cucumber (Chinese Long) v2	cuwgoB049
Bhi08G000132	Bottle gourd (USVL1VR-Ls)	lsiwgoB337
Bhi08G000132	Melon (DHL92) v3.6.1	medwgoB176
Bhi08G000132	Melon (DHL92) v3.5.1	mewgoB174
Bhi08G000132	Watermelon (Charleston Gray)	wcgwgoB243
Bhi08G000132	Watermelon (97103) v2	wgowmbB461
Bhi08G000132	Watermelon (97103) v1	wgowmB499
Bhi08G000132	Silver-seed gourd	carwgoB0216