Bhi08G000127 (gene) Wax gourd

NameBhi08G000127
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionprotein FAR1-RELATED SEQUENCE 11
Locationchr8 : 5482631 .. 5483020 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCAAGCCAGGGTCTTAAGTCGAACTTGAGAAGTTAAACGAGATATAATGCCTGAAGACTGGACCGTTGTTGGTCGTATATGATGATCCCTCTGACCAACAGTCCTTGTCTTTAGATGAAACCGGCAGCACGGAGGAGTCACCTGCTGAAACCAGGCTGTCCCTGGATTCAAATAATGATGCAACTCCATATATAGGGCAAAGGTTTCCTACTCATAACTCTGCTTATGAGTTTTATAGTGAATTTGCAAAGAGATGTGGCTTCCCAATCCGAAGACACCGAACAGAGGGAAAAGATGGGATTGGGAAAGGCCTTACAAGGCGCTATTTTGTTTGCCATCGTGCTGGGAACACACCTAATAAGACACCAACTGAAAATAAGCCTTAA

mRNA sequence

ATGCTCAAGCCAGGCACGGAGGAGTCACCTGCTGAAACCAGGCTGTCCCTGGATTCAAATAATGATGCAACTCCATATATAGGGCAAAGGTTTCCTACTCATAACTCTGCTTATGAGTTTTATAGTGAATTTGCAAAGAGATGTGGCTTCCCAATCCGAAGACACCGAACAGAGGGAAAAGATGGGATTGGGAAAGGCCTTACAAGGCGCTATTTTGTTTGCCATCGTGCTGGGAACACACCTAATAAGACACCAACTGAAAATAAGCCTTAA

Coding sequence (CDS)

ATGCTCAAGCCAGGCACGGAGGAGTCACCTGCTGAAACCAGGCTGTCCCTGGATTCAAATAATGATGCAACTCCATATATAGGGCAAAGGTTTCCTACTCATAACTCTGCTTATGAGTTTTATAGTGAATTTGCAAAGAGATGTGGCTTCCCAATCCGAAGACACCGAACAGAGGGAAAAGATGGGATTGGGAAAGGCCTTACAAGGCGCTATTTTGTTTGCCATCGTGCTGGGAACACACCTAATAAGACACCAACTGAAAATAAGCCTTAA

Protein sequence

MLKPGTEESPAETRLSLDSNNDATPYIGQRFPTHNSAYEFYSEFAKRCGFPIRRHRTEGKDGIGKGLTRRYFVCHRAGNTPNKTPTENKP
BLAST of Bhi08G000127 vs. Swiss-Prot
Match: sp|Q9SY66|FRS11_ARATH (Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana OX=3702 GN=FRS11 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-31
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 0

Query: 6   TEESPAETRLSLDSNNDATPYIGQRFPTHNSAYEFYSEFAKRCGFPIRRHRTEGKDGIGK 65
           TEESP +  LSL++ ++A PY+GQ F TH++AYEFYS FAKRCGF IRRHRTEGKDG+GK
Sbjct: 29  TEESPDDNNLSLEAVHNAIPYLGQIFLTHDTAYEFYSTFAKRCGFSIRRHRTEGKDGVGK 88

Query: 66  GLTRRYFVCHRAGNTPNKTPTENKP 91
           GLTRRYFVCHRAGNTP KT +E KP
Sbjct: 89  GLTRRYFVCHRAGNTPIKTLSEGKP 113

BLAST of Bhi08G000127 vs. Swiss-Prot
Match: sp|Q9LKR4|FRS10_ARATH (Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana OX=3702 GN=FRS10 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-08
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 0

Query: 24  TPYIGQRFPTHNSAYEFYSEFAKRCGFPIRRHRTEGKDGIGKGLTRRYFVCHRAG-NTPN 83
           TPY+GQ F T + A+E+YS FA++ GF IR+ R+     +  G+ RR FVC+R+G N P 
Sbjct: 54  TPYVGQIFTTDDEAFEYYSTFARKSGFSIRKARSTESQNL--GVYRRDFVCYRSGFNQPR 113

Query: 84  KTPTENKP 91
           K      P
Sbjct: 114 KKANVEHP 119

BLAST of Bhi08G000127 vs. TAIR10
Match: AT1G10240.1 (FAR1-related sequence 11)

HSP 1 Score: 136.7 bits (343), Expect = 6.9e-33
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 0

Query: 6   TEESPAETRLSLDSNNDATPYIGQRFPTHNSAYEFYSEFAKRCGFPIRRHRTEGKDGIGK 65
           TEESP +  LSL++ ++A PY+GQ F TH++AYEFYS FAKRCGF IRRHRTEGKDG+GK
Sbjct: 29  TEESPDDNNLSLEAVHNAIPYLGQIFLTHDTAYEFYSTFAKRCGFSIRRHRTEGKDGVGK 88

Query: 66  GLTRRYFVCHRAGNTPNKTPTENKP 91
           GLTRRYFVCHRAGNTP KT +E KP
Sbjct: 89  GLTRRYFVCHRAGNTPIKTLSEGKP 113

BLAST of Bhi08G000127 vs. TAIR10
Match: AT5G28530.1 (FAR1-related sequence 10)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-09
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 0

Query: 24  TPYIGQRFPTHNSAYEFYSEFAKRCGFPIRRHRTEGKDGIGKGLTRRYFVCHRAG-NTPN 83
           TPY+GQ F T + A+E+YS FA++ GF IR+ R+     +  G+ RR FVC+R+G N P 
Sbjct: 54  TPYVGQIFTTDDEAFEYYSTFARKSGFSIRKARSTESQNL--GVYRRDFVCYRSGFNQPR 113

Query: 84  KTPTENKP 91
           K      P
Sbjct: 114 KKANVEHP 119

BLAST of Bhi08G000127 vs. TAIR10
Match: AT4G12850.1 (Far-red impaired responsive (FAR1) family protein)

HSP 1 Score: 42.4 bits (98), Expect = 1.8e-04
Identity = 24/60 (40.00%), Postives = 35/60 (58.33%), Query Frame = 0

Query: 25 PYIGQRFPTHNSAYEFYSEFAKRCGFPIR--RHRTEGKDGIGKGLTRRYFVCHRAGNTPN 83
          PY+G +F +   A +FY E++KR GF +R  + R  G D  G+ L RR   C++ G  PN
Sbjct: 10 PYVGLKFESEEEAKDFYVEYSKRLGFVVRMMQRRRSGID--GRTLARR-LGCNKQGFGPN 66

BLAST of Bhi08G000127 vs. TAIR10
Match: AT5G18960.1 (FAR1-related sequence 12)

HSP 1 Score: 42.0 bits (97), Expect = 2.3e-04
Identity = 23/66 (34.85%), Postives = 33/66 (50.00%), Query Frame = 0

Query: 18 DSNNDATPYIGQRFPTHNSAYEFYSEFAKRCGFPIR-----RHRTEGKDGIGKGLTRRYF 77
          +  +   PY+G  F T   A EFY+ +A R GF +R     R RT+G       ++ R F
Sbjct: 36 EGGSGVEPYVGLEFDTAEEAREFYNAYAARTGFKVRTGQLYRSRTDGT------VSSRRF 95

Query: 78 VCHRAG 79
          VC + G
Sbjct: 96 VCSKEG 95

BLAST of Bhi08G000127 vs. TAIR10
Match: AT3G06250.1 (FAR1-related sequence 7)

HSP 1 Score: 40.4 bits (93), Expect = 6.7e-04
Identity = 25/79 (31.65%), Postives = 38/79 (48.10%), Query Frame = 0

Query: 5  GTEESPAETRLSLDSNNDATPYIGQRFPTHNSAYEFYSEFAKRCGFPIR-----RHRTEG 64
          GT    AE     + ++   PY+G  F T   A ++Y+ +A R GF +R     R RT+G
Sbjct: 12 GTNNGIAEN----EGDSGLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDG 71

Query: 65 KDGIGKGLTRRYFVCHRAG 79
                 ++ R FVC + G
Sbjct: 72 T------VSSRRFVCSKEG 80

BLAST of Bhi08G000127 vs. TrEMBL
Match: tr|A0A1S4E549|A0A1S4E549_CUCME (protein FAR1-RELATED SEQUENCE 11 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502896 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-38
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 6   TEESPAETRLSLDSNNDATPYIGQRFPTHNSAYEFYSEFAKRCGFPIRRHRTEGKDGIGK 65
           TEESP ETRLSLDS+NDATPYIGQRFPTH+SAYEFYSEFAKRCGF IRRHRTEGKDGIGK
Sbjct: 30  TEESPDETRLSLDSSNDATPYIGQRFPTHDSAYEFYSEFAKRCGFSIRRHRTEGKDGIGK 89

Query: 66  GLTRRYFVCHRAGNTPNKTPTENKP 91
           GLTRRYFVCHRAG+TP KTP ENKP
Sbjct: 90  GLTRRYFVCHRAGSTPIKTPNENKP 114

BLAST of Bhi08G000127 vs. TrEMBL
Match: tr|A0A1S4E547|A0A1S4E547_CUCME (protein FAR1-RELATED SEQUENCE 11 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103502896 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-38
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 6   TEESPAETRLSLDSNNDATPYIGQRFPTHNSAYEFYSEFAKRCGFPIRRHRTEGKDGIGK 65
           TEESP ETRLSLDS+NDATPYIGQRFPTH+SAYEFYSEFAKRCGF IRRHRTEGKDGIGK
Sbjct: 30  TEESPDETRLSLDSSNDATPYIGQRFPTHDSAYEFYSEFAKRCGFSIRRHRTEGKDGIGK 89

Query: 66  GLTRRYFVCHRAGNTPNKTPTENKP 91
           GLTRRYFVCHRAG+TP KTP ENKP
Sbjct: 90  GLTRRYFVCHRAGSTPIKTPNENKP 114

BLAST of Bhi08G000127 vs. TrEMBL
Match: tr|A0A1S4E5V1|A0A1S4E5V1_CUCME (protein FAR1-RELATED SEQUENCE 11 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502896 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-38
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 6   TEESPAETRLSLDSNNDATPYIGQRFPTHNSAYEFYSEFAKRCGFPIRRHRTEGKDGIGK 65
           TEESP ETRLSLDS+NDATPYIGQRFPTH+SAYEFYSEFAKRCGF IRRHRTEGKDGIGK
Sbjct: 29  TEESPDETRLSLDSSNDATPYIGQRFPTHDSAYEFYSEFAKRCGFSIRRHRTEGKDGIGK 88

Query: 66  GLTRRYFVCHRAGNTPNKTPTENKP 91
           GLTRRYFVCHRAG+TP KTP ENKP
Sbjct: 89  GLTRRYFVCHRAGSTPIKTPNENKP 113

BLAST of Bhi08G000127 vs. TrEMBL
Match: tr|A0A0A0KPF5|A0A0A0KPF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003630 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-38
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 6   TEESPAETRLSLDSNNDATPYIGQRFPTHNSAYEFYSEFAKRCGFPIRRHRTEGKDGIGK 65
           TEESP ETRLSLDS+NDATPYIGQRFPTH+SAYEFYSEFAKRCGF IRRHRTEGKDGIGK
Sbjct: 30  TEESPDETRLSLDSSNDATPYIGQRFPTHDSAYEFYSEFAKRCGFSIRRHRTEGKDGIGK 89

Query: 66  GLTRRYFVCHRAGNTPNKTPTENKP 91
           GLTRRYFVCHRAG+TP KTP ENKP
Sbjct: 90  GLTRRYFVCHRAGSTPIKTPNENKP 114

BLAST of Bhi08G000127 vs. TrEMBL
Match: tr|V4UZ79|V4UZ79_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10000456mg PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.0e-35
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 0

Query: 6   TEESPAETRLSLDSNNDATPYIGQRFPTHNSAYEFYSEFAKRCGFPIRRHRTEGKDGIGK 65
           TEESP ETRLSL+S ND  PYIGQRFPTH++AYE+YSEFAK CGF IRRHRTEGKDG+GK
Sbjct: 30  TEESPDETRLSLESTNDVVPYIGQRFPTHDAAYEYYSEFAKSCGFSIRRHRTEGKDGVGK 89

Query: 66  GLTRRYFVCHRAGNTPNKTPTENKP 91
           GLTRRYFVCHRAGNTP KT  ENKP
Sbjct: 90  GLTRRYFVCHRAGNTPIKTSNENKP 114

BLAST of Bhi08G000127 vs. NCBI nr
Match: XP_022941138.1 (protein FAR1-RELATED SEQUENCE 11-like [Cucurbita moschata] >XP_022941146.1 protein FAR1-RELATED SEQUENCE 11-like [Cucurbita moschata] >XP_022941152.1 protein FAR1-RELATED SEQUENCE 11-like [Cucurbita moschata] >XP_022941160.1 protein FAR1-RELATED SEQUENCE 11-like [Cucurbita moschata])

HSP 1 Score: 169.1 bits (427), Expect = 6.9e-39
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 6   TEESPAETRLSLDSNNDATPYIGQRFPTHNSAYEFYSEFAKRCGFPIRRHRTEGKDGIGK 65
           TEESP ETRLSLDS+NDA PYIGQRFPTH+SAYEFYSEFAKRCGF IRRHRTEGKDGIGK
Sbjct: 30  TEESPDETRLSLDSSNDAIPYIGQRFPTHDSAYEFYSEFAKRCGFSIRRHRTEGKDGIGK 89

Query: 66  GLTRRYFVCHRAGNTPNKTPTENKP 91
           GLTRRYFVCHRAGNTP KTPTENKP
Sbjct: 90  GLTRRYFVCHRAGNTPIKTPTENKP 114

BLAST of Bhi08G000127 vs. NCBI nr
Match: XP_016903356.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X3 [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 2.0e-38
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 6   TEESPAETRLSLDSNNDATPYIGQRFPTHNSAYEFYSEFAKRCGFPIRRHRTEGKDGIGK 65
           TEESP ETRLSLDS+NDATPYIGQRFPTH+SAYEFYSEFAKRCGF IRRHRTEGKDGIGK
Sbjct: 30  TEESPDETRLSLDSSNDATPYIGQRFPTHDSAYEFYSEFAKRCGFSIRRHRTEGKDGIGK 89

Query: 66  GLTRRYFVCHRAGNTPNKTPTENKP 91
           GLTRRYFVCHRAG+TP KTP ENKP
Sbjct: 90  GLTRRYFVCHRAGSTPIKTPNENKP 114

BLAST of Bhi08G000127 vs. NCBI nr
Match: KGN49571.1 (hypothetical protein Csa_5G003630 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 2.0e-38
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 6   TEESPAETRLSLDSNNDATPYIGQRFPTHNSAYEFYSEFAKRCGFPIRRHRTEGKDGIGK 65
           TEESP ETRLSLDS+NDATPYIGQRFPTH+SAYEFYSEFAKRCGF IRRHRTEGKDGIGK
Sbjct: 30  TEESPDETRLSLDSSNDATPYIGQRFPTHDSAYEFYSEFAKRCGFSIRRHRTEGKDGIGK 89

Query: 66  GLTRRYFVCHRAGNTPNKTPTENKP 91
           GLTRRYFVCHRAG+TP KTP ENKP
Sbjct: 90  GLTRRYFVCHRAGSTPIKTPNENKP 114

BLAST of Bhi08G000127 vs. NCBI nr
Match: XP_011654451.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 11 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 2.0e-38
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 6   TEESPAETRLSLDSNNDATPYIGQRFPTHNSAYEFYSEFAKRCGFPIRRHRTEGKDGIGK 65
           TEESP ETRLSLDS+NDATPYIGQRFPTH+SAYEFYSEFAKRCGF IRRHRTEGKDGIGK
Sbjct: 30  TEESPDETRLSLDSSNDATPYIGQRFPTHDSAYEFYSEFAKRCGFSIRRHRTEGKDGIGK 89

Query: 66  GLTRRYFVCHRAGNTPNKTPTENKP 91
           GLTRRYFVCHRAG+TP KTP ENKP
Sbjct: 90  GLTRRYFVCHRAGSTPIKTPNENKP 114

BLAST of Bhi08G000127 vs. NCBI nr
Match: XP_016903353.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1 [Cucumis melo] >XP_016903354.1 PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1 [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 2.0e-38
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 6   TEESPAETRLSLDSNNDATPYIGQRFPTHNSAYEFYSEFAKRCGFPIRRHRTEGKDGIGK 65
           TEESP ETRLSLDS+NDATPYIGQRFPTH+SAYEFYSEFAKRCGF IRRHRTEGKDGIGK
Sbjct: 30  TEESPDETRLSLDSSNDATPYIGQRFPTHDSAYEFYSEFAKRCGFSIRRHRTEGKDGIGK 89

Query: 66  GLTRRYFVCHRAGNTPNKTPTENKP 91
           GLTRRYFVCHRAG+TP KTP ENKP
Sbjct: 90  GLTRRYFVCHRAGSTPIKTPNENKP 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
sp|Q9SY66|FRS11_ARATH1.2e-3174.12Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana OX=3702 GN=FRS11 PE=1 S... [more]
sp|Q9LKR4|FRS10_ARATH2.5e-0844.12Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana OX=3702 GN=FRS... [more]
Match NameE-valueIdentityDescription
AT1G10240.16.9e-3374.12FAR1-related sequence 11[more]
AT5G28530.11.4e-0944.12FAR1-related sequence 10[more]
AT4G12850.11.8e-0440.00Far-red impaired responsive (FAR1) family protein[more]
AT5G18960.12.3e-0434.85FAR1-related sequence 12[more]
AT3G06250.16.7e-0431.65FAR1-related sequence 7[more]
Match NameE-valueIdentityDescription
tr|A0A1S4E549|A0A1S4E549_CUCME1.3e-3891.76protein FAR1-RELATED SEQUENCE 11 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502... [more]
tr|A0A1S4E547|A0A1S4E547_CUCME1.3e-3891.76protein FAR1-RELATED SEQUENCE 11 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103502... [more]
tr|A0A1S4E5V1|A0A1S4E5V1_CUCME1.3e-3891.76protein FAR1-RELATED SEQUENCE 11 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502... [more]
tr|A0A0A0KPF5|A0A0A0KPF5_CUCSA1.3e-3891.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003630 PE=4 SV=1[more]
tr|V4UZ79|V4UZ79_9ROSI4.0e-3583.53Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10000456mg PE=4 ... [more]
Match NameE-valueIdentityDescription
XP_022941138.16.9e-3992.94protein FAR1-RELATED SEQUENCE 11-like [Cucurbita moschata] >XP_022941146.1 prote... [more]
XP_016903356.12.0e-3891.76PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X3 [Cucumis melo][more]
KGN49571.12.0e-3891.76hypothetical protein Csa_5G003630 [Cucumis sativus][more]
XP_011654451.12.0e-3891.76PREDICTED: protein FAR1-RELATED SEQUENCE 11 [Cucumis sativus][more]
XP_016903353.12.0e-3891.76PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1 [Cucumis melo] >XP_016903... [more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR031052FHY3/FAR1
IPR004330FAR1_DNA_bnd_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M000127Bhi08M000127mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004330FAR1 DNA binding domainPFAMPF03101FAR1coord: 39..86
e-value: 2.0E-6
score: 28.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availablePANTHERPTHR31669:SF135PROTEIN FAR1-RELATED SEQUENCE 11coord: 6..89
IPR031052FHY3/FAR1 familyPANTHERPTHR31669FAMILY NOT NAMEDcoord: 6..89

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None