Bhi08G000114 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G000114
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr8 : 5215938 .. 5216487 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGATATCCCTTCACGTGTTAGAGTGAAAGGGCTTAAGTGGATTGTTGATGACAAGGACCCAAATGCAGTCCGACCACGTAAGCGGCCCCTCACATCGCCAGTACTGGTTAGTATACGCCTTCTGTTATGCATAACAACCTCTTTGTCAATTTTGGACTGTGAGAACCATTTGCTCTTTTTCATTTGCAGGAACACTTAAACACGAGATTGCAGGACATCCGATTAGAGAAACAACAACGATATGGGATAAGGAGCAATTATATCCAGAGTATATTTTTGGTATTCACGAGATGTACAAACCTGCTTCGTGTGATGTCGACTTTTTATACGCGTCGTTGAACATGAGGGATCATTGGATGTTATTAGTGATTGACAGGACTGTGGGGGAAATTCTAGTATATGATTCAATGTCGTCGTACACCAGTATAGCCAACCTAAAGACGAAGCTACTCCCACTAACACACACGTTGCCATCTCTAATTACATATTGTAATGTTCAGAAAGTGAATAAAGGTCTCCCACATGCATCGTGGAAGTTTAGATGA

mRNA sequence

ATGCATGATATCCCTTCACGTGTTAGAGTGAAAGGGCTTAAGTGGATTGTTGATGACAAGGACCCAAATGCAGTCCGACCACGAACACTTAAACACGAGATTGCAGGACATCCGATTAGAGAAACAACAACGATATGGGATAAGGAGCAATTATATCCAGAGTATATTTTTGGTATTCACGAGATGTACAAACCTGCTTCGTGTGATGTCGACTTTTTATACGCGTCGTTGAACATGAGGGATCATTGGATGTTATTAGTGATTGACAGGACTGTGGGGGAAATTCTAGTATATGATTCAATGTCGTCGTACACCAGTATAGCCAACCTAAAGACGAAGCTACTCCCACTAACACACACGTTGCCATCTCTAATTACATATTGTAATGTTCAGAAAGTGAATAAAGGTCTCCCACATGCATCGTGGAAGTTTAGATGA

Coding sequence (CDS)

ATGCATGATATCCCTTCACGTGTTAGAGTGAAAGGGCTTAAGTGGATTGTTGATGACAAGGACCCAAATGCAGTCCGACCACGAACACTTAAACACGAGATTGCAGGACATCCGATTAGAGAAACAACAACGATATGGGATAAGGAGCAATTATATCCAGAGTATATTTTTGGTATTCACGAGATGTACAAACCTGCTTCGTGTGATGTCGACTTTTTATACGCGTCGTTGAACATGAGGGATCATTGGATGTTATTAGTGATTGACAGGACTGTGGGGGAAATTCTAGTATATGATTCAATGTCGTCGTACACCAGTATAGCCAACCTAAAGACGAAGCTACTCCCACTAACACACACGTTGCCATCTCTAATTACATATTGTAATGTTCAGAAAGTGAATAAAGGTCTCCCACATGCATCGTGGAAGTTTAGATGA

Protein sequence

MHDIPSRVRVKGLKWIVDDKDPNAVRPRTLKHEIAGHPIRETTTIWDKEQLYPEYIFGIHEMYKPASCDVDFLYASLNMRDHWMLLVIDRTVGEILVYDSMSSYTSIANLKTKLLPLTHTLPSLITYCNVQKVNKGLPHASWKFR

Homology

[Close]

BLAST of Bhi08G000114 vs. NCBI nr
Match: XP_022155371.1 (uncharacterized protein LOC111022515 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 2.4e-09
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 0


Query: 54  EYIFGIHEMYKPASCDVDFLYASLNMRDHWMLLVIDRTVGEILVYDSMSSYTSIANLKTK 113
           + + G  E + P+  DVD +Y+ L +RDHW+L+ ID T  EI VYD +  + S + L T 
Sbjct: 2   DVVLGHVEDFIPSWVDVDVVYSPLCIRDHWVLVXIDMTQSEIFVYDPLPGHISTSKLMTD 61

Query: 114 LLPLTHTLPSLITYCNVQKVNK-GLPHASWK 144
           + PL+HT+PSL+  C +       L   SW+
Sbjct: 62  IRPLSHTIPSLLYACGLMDTTDCKLKKTSWR 92

[Close]

BLAST of Bhi08G000114 vs. NCBI nr
Match: XP_022154997.1 (uncharacterized protein LOC111022140 [Momordica charantia])

HSP 1 Score: 71.2 bits (173), Expect = 3.2e-09
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 54  EYIFGIHEMYKPASCDVDFLYASLNMRDHWMLLVIDRTVGEILVYDSMSSYTSIANLKTK 113
           + + G  E + PA  DVD +Y+ L +RDHW+L+ ID T  EI VYDS+  + S + L   
Sbjct: 2   DVVLGQVEDFIPAWVDVDVVYSLLLIRDHWVLVAIDMTQSEIFVYDSLPGHISTSKLMID 61

Query: 114 LLPLTHTLPSLITYCNV 131
           L PL+HT+PSL+  C +
Sbjct: 62  LRPLSHTIPSLLYACGL 78

[Close]

BLAST of Bhi08G000114 vs. NCBI nr
Match: XP_022143569.1 (uncharacterized protein LOC111013439 [Momordica charantia])

HSP 1 Score: 69.7 bits (169), Expect = 9.2e-09
Identity = 33/87 (37.93%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 39  IRETTTIWDKEQLYPEYIFGIHEMYKPASCDVDFLYASLNMRDHWMLLVIDRTVGEILVY 98
           +R+  + WD+ +   E + G    + P    VDF+Y  L++R+HW+L+ I+    EILVY
Sbjct: 52  LRDIISTWDEHKECMEAVLGHAADFIPPWVSVDFVYGLLHIRNHWVLVAINMNESEILVY 111

Query: 99  DSMSSYTSIANLKTKLLPLTHTLPSLI 126
           DS+ S+T I+     L PL+H +PSL+
Sbjct: 112 DSLPSHTPISRCIEDLKPLSHIIPSLL 138

[Close]

BLAST of Bhi08G000114 vs. NCBI nr
Match: XP_022148137.1 (uncharacterized protein LOC111016890 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 0


Query: 25  VRPRTLKHEIAGHPIRETTTIWDKEQLYPEYIFGIHEMYKPASCDVDFLYASLNM-RDHW 84
           ++P  L   I  +P  E  TIW        Y+ G    +     D D +Y  +N+  +HW
Sbjct: 1   MKPXVLSTRI-NYPWXEENTIW-------RYVHGRQSDHNVPWSDADIVYTPMNVGGNHW 60

Query: 85  MLLVIDRTVGEILVYDSMSSYTSIANLKTKLLPLTHTLPSLITYCNVQKVNKGLPHASWK 144
           ++L ID   G+I V+DS+ + T +  L+ +L P+   LP+L+ +  +  V   LP   W+
Sbjct: 61  VMLGIDLVQGDITVWDSLQTATPLDELEKELKPMCTILPTLLHHGGIFSVRPDLPVVPWR 114

Query: 145 FR 146
            R
Sbjct: 121 VR 114

[Close]

BLAST of Bhi08G000114 vs. NCBI nr
Match: XP_022158807.1 (uncharacterized protein LOC111025273 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 25/101 (24.75%), Postives = 53/101 (52.48%), Query Frame = 0


Query: 46  WDKEQLYPEYIFGIHEMYKPASCDVDFLYASLNM-RDHWMLLVIDRTVGEILVYDSMSSY 105
           W +E+    Y+ G    Y     + D +Y  +N+  +HW+++ ID   G++ V+DS+ + 
Sbjct: 94  WRQERTIFRYVLGRQSDYDTLWSEADIVYTRMNIGGNHWVMIGIDLVEGDLTVWDSLQAI 153

Query: 106 TSIANLKTKLLPLTHTLPSLITYCNVQKVNKGLPHASWKFR 146
           T + +L+  L P+   +P+++ +  +  +   LP   W+ R
Sbjct: 154 TPLEDLEKALKPMCTIIPAILHWSGILALRPNLPMVPWRVR 194

The following BLAST results are available for this feature:

BLAST of Bhi08G000114 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi08G000114 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi08G000114 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of Bhi08G000114 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155371.1	2.4e-09	38.46	uncharacterized protein LOC111022515 [Momordica charantia]	[more]
XP_022154997.1	3.2e-09	44.16	uncharacterized protein LOC111022140 [Momordica charantia]	[more]
XP_022143569.1	9.2e-09	37.93	uncharacterized protein LOC111013439 [Momordica charantia]	[more]
XP_022148137.1	1.5e-06	29.51	uncharacterized protein LOC111016890 [Momordica charantia]	[more]
XP_022158807.1	1.6e-05	24.75	uncharacterized protein LOC111025273 [Momordica charantia]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008234	cysteine-type peptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **INTERPRO**
Term	Definition
IPR038765	Papain_like_cys_pep_sf
IPR003653	Peptidase_C48_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000114	Bhi08M000114	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PFAM	PF02902	Peptidase_C48	coord: 64..133 e-value: 4.0E-10 score: 39.8
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	SSF54001	Cysteine proteinases	coord: 67..110

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G000114	Cucumber (Gy14) v1	cgywgoB422
Bhi08G000114	Cucumber (Gy14) v2	cgybwgoB046
Bhi08G000114	Cucurbita maxima (Rimu)	cmawgoB0220
Bhi08G000114	Cucurbita maxima (Rimu)	cmawgoB0267
Bhi08G000114	Cucurbita moschata (Rifu)	cmowgoB0214
Bhi08G000114	Cucurbita moschata (Rifu)	cmowgoB0259
Bhi08G000114	Cucurbita pepo (Zucchini)	cpewgoB0636
Bhi08G000114	Cucurbita pepo (Zucchini)	cpewgoB1056
Bhi08G000114	Wild cucumber (PI 183967)	cpiwgoB049
Bhi08G000114	Cucumber (Chinese Long) v3	cucwgoB051
Bhi08G000114	Cucumber (Chinese Long) v2	cuwgoB049
Bhi08G000114	Bottle gourd (USVL1VR-Ls)	lsiwgoB337
Bhi08G000114	Melon (DHL92) v3.6.1	medwgoB176
Bhi08G000114	Melon (DHL92) v3.5.1	mewgoB174
Bhi08G000114	Watermelon (Charleston Gray)	wcgwgoB243
Bhi08G000114	Watermelon (97103) v2	wgowmbB461
Bhi08G000114	Watermelon (97103) v1	wgowmB499
Bhi08G000114	Watermelon (97103) v1	wgowmB514
Bhi08G000114	Silver-seed gourd	carwgoB0216