Bhi08G000109 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G000109
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	histone H2B type 1-A-like
Location	chr8 : 5007826 .. 5008150 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCGAGACGATCCCGCAGAGTCGTTGGTTCTGTCGTCCGGACGACCACGAGGATGGTGGAAGAAACTGTACAAGTGGCAGTTCTGGAGAAAGAAAGCCAGGATTTGACTCAAGAACCCGAAACGACACAAACGGCTGAGGGCCGCGGCGGTGATGTCTTCCGGAGGACTATCCCGGTGGAAGAGAAGGCTCCACCACGGGAACAGCCGAAAACTTTTCCGGTATCGGAAGATTTTGACACAAGAAAGCCAACGGATTCGACGTCGCAGCTCACGGAGGACACCGCTGCGACTCCGGAGGTGGAACCCGAGGTCCGGAATG

mRNA sequence

ATGCCGCCGAGACGATCCCGCAGAGTCGTTGGTTCTGTCGTCCGGACGACCACGAGGATGGTGGAAGAAACTGTACAAGTGGCAGTTCTGGAGAAAGAAAGCCAGGATTTGACTCAAGAACCCGAAACGACACAAACGGCTGAGGGCCGCGGCGGTGATGTCTTCCGGAGGACTATCCCGGTGGAAGAGAAGGCTCCACCACGGGAACAGCCGAAAACTTTTCCGGTATCGGAAGATTTTGACACAAGAAAGCCAACGGATTCGACGTCGCAGCTCACGGAGGACACCGCTGCGACTCCGGAGGTGGAACCCGAGGTCCGGAATG

Coding sequence (CDS)

ATGCCGCCGAGACGATCCCGCAGAGTCGTTGGTTCTGTCGTCCGGACGACCACGAGGATGGTGGAAGAAACTGTACAAGTGGCAGTTCTGGAGAAAGAAAGCCAGGATTTGACTCAAGAACCCGAAACGACACAAACGGCTGAGGGCCGCGGCGGTGATGTCTTCCGGAGGACTATCCCGGTGGAAGAGAAGGCTCCACCACGGGAACAGCCGAAAACTTTTCCGGTATCGGAAGATTTTGACACAAGAAAGCCAACGGATTCGACGTCGCAGCTCACGGAGGACACCGCTGCGACTCCGGAGGTGGAACCCGAGGTCCGGAATG

Protein sequence

MPPRRSRRVVGSVVRTTTRMVEETVQVAVLEKESQDLTQEPETTQTAEGRGGDVFRRTIPVEEKAPPREQPKTFPVSEDFDTRKPTDSTSQLTEDTAATPEVEPEVRN

Homology

[Close]

BLAST of Bhi08G000109 vs. TrEMBL
Match: tr|A0A1S3CH74|A0A1S3CH74_CUCME (histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.2e-32
Identity = 84/109 (77.06%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRMVEETVQVAVLEKESQDLTQEPETTQTAEGRGGDVFRRTIP 60
           MPPRRSRRVVGSVVRTTTR+VEETVQVAV+EKESQDLTQEP+T +TA+G GG++FRR +P
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADG-GGEMFRRPVP 60

Query: 61  VEE-KAP-PREQPKTFPVSEDFDTRKPTDSTSQLTEDTAATPEVEPEVR 108
           VEE K+P P EQP T PVSE+F+ R+ TDSTSQLTEDTA TPE+EPEV+
Sbjct: 61  VEEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQ 108

[Close]

BLAST of Bhi08G000109 vs. TrEMBL
Match: tr|A0A0A0LSH9|A0A0A0LSH9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.5e-31
Identity = 78/107 (72.90%), Postives = 93/107 (86.92%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRMVEETVQVAVLEKESQDLTQEPETTQTAEGRGGDVFRRTIP 60
           MPPRRSRRVVGSVVRTTTR+VEETVQVAV+EKESQDLTQEP+  +T +G GG++FRRT+P
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDG-GGEMFRRTVP 60

Query: 61  VEEKAPPREQPKTFPVSEDFDTRKPTDSTSQLTEDTAATPEVEPEVR 108
           VEE     +QP + PVSEDF+ R+ TDSTSQLTEDTA TPE+EP++R
Sbjct: 61  VEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIR 106

[Close]

BLAST of Bhi08G000109 vs. NCBI nr
Match: XP_008462313.1 (PREDICTED: histone H2B type 1-A-like [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 3.4e-32
Identity = 84/109 (77.06%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRMVEETVQVAVLEKESQDLTQEPETTQTAEGRGGDVFRRTIP 60
           MPPRRSRRVVGSVVRTTTR+VEETVQVAV+EKESQDLTQEP+T +TA+G GG++FRR +P
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADG-GGEMFRRPVP 60

Query: 61  VEE-KAP-PREQPKTFPVSEDFDTRKPTDSTSQLTEDTAATPEVEPEVR 108
           VEE K+P P EQP T PVSE+F+ R+ TDSTSQLTEDTA TPE+EPEV+
Sbjct: 61  VEEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQ 108

[Close]

BLAST of Bhi08G000109 vs. NCBI nr
Match: KGN64870.1 (hypothetical protein Csa_1G136770 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 8.3e-31
Identity = 78/107 (72.90%), Postives = 93/107 (86.92%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRMVEETVQVAVLEKESQDLTQEPETTQTAEGRGGDVFRRTIP 60
           MPPRRSRRVVGSVVRTTTR+VEETVQVAV+EKESQDLTQEP+  +T +G GG++FRRT+P
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDG-GGEMFRRTVP 60

Query: 61  VEEKAPPREQPKTFPVSEDFDTRKPTDSTSQLTEDTAATPEVEPEVR 108
           VEE     +QP + PVSEDF+ R+ TDSTSQLTEDTA TPE+EP++R
Sbjct: 61  VEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIR 106

[Close]

BLAST of Bhi08G000109 vs. NCBI nr
Match: XP_011648456.1 (PREDICTED: histone H2B [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 9.5e-27
Identity = 72/97 (74.23%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1  MPPRRSRRVVGSVVRTTTRMVEETVQVAVLEKESQDLTQEPETTQTAEGRGGDVFRRTIP 60
          MPPRRSRRVVGSVVRTTTR+VEETVQVAV+EKESQDLTQEP+  +T +G GG++FRRT+P
Sbjct: 1  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDG-GGEMFRRTVP 60

Query: 61 VEEKAPPREQPKTFPVSEDFDTRKPTDSTSQLTEDTA 98
          VEE     +QP + PVSEDF+ R+ TDSTSQLTEDTA
Sbjct: 61 VEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTA 96

[Close]

BLAST of Bhi08G000109 vs. NCBI nr
Match: XP_022937552.1 (histone H2B.6-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 101.3 bits (251), Expect = 2.1e-18
Identity = 64/109 (58.72%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRMVEETVQVAVLEKESQDLTQEPETTQTAEGRGGD-VFRRTI 60
           MPPRRSRR+VGSVVRTTT++VEETV VAV+E ESQD+TQEP T +T    GGD VFRRTI
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET----GGDGVFRRTI 60

Query: 61  PVEEKAPPREQPKTFPVSEDFDTRKPTDSTSQLTEDTAATPEVEPEVRN 109
           PVE+       P+T PV  D    +P DSTS++TED   T ++E + R+
Sbjct: 61  PVED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARD 98

[Close]

BLAST of Bhi08G000109 vs. NCBI nr
Match: XP_022937553.1 (histone H2B.1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 101.3 bits (251), Expect = 2.1e-18
Identity = 64/109 (58.72%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRMVEETVQVAVLEKESQDLTQEPETTQTAEGRGGD-VFRRTI 60
           MPPRRSRR+VGSVVRTTT++VEETV VAV+E ESQD+TQEP T +T    GGD VFRRTI
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET----GGDGVFRRTI 60

Query: 61  PVEEKAPPREQPKTFPVSEDFDTRKPTDSTSQLTEDTAATPEVEPEVRN 109
           PVE+       P+T PV  D    +P DSTS++TED   T ++E + R+
Sbjct: 61  PVED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARD 98

The following BLAST results are available for this feature:

BLAST of Bhi08G000109 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi08G000109 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi08G000109 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CH74\|A0A1S3CH74_CUCME	2.2e-32	77.06	histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1	[more]
tr\|A0A0A0LSH9\|A0A0A0LSH9_CUCSA	5.5e-31	72.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=3 SV=1	[more]

BLAST of Bhi08G000109 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462313.1	3.4e-32	77.06	PREDICTED: histone H2B type 1-A-like [Cucumis melo]	[more]
KGN64870.1	8.3e-31	72.90	hypothetical protein Csa_1G136770 [Cucumis sativus]	[more]
XP_011648456.1	9.5e-27	74.23	PREDICTED: histone H2B [Cucumis sativus]	[more]
XP_022937552.1	2.1e-18	58.72	histone H2B.6-like isoform X1 [Cucurbita moschata]	[more]
XP_022937553.1	2.1e-18	58.72	histone H2B.1-like isoform X2 [Cucurbita moschata]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005694	chromosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000109	Bhi08M000109	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 20..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi08G000109	Cp4.1LG07g06820	Cucurbita pepo (Zucchini)	cpewgoB1055

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G000109	Cucumber (Gy14) v1	cgywgoB422
Bhi08G000109	Cucumber (Gy14) v2	cgybwgoB046
Bhi08G000109	Cucurbita maxima (Rimu)	cmawgoB0220
Bhi08G000109	Cucurbita maxima (Rimu)	cmawgoB0267
Bhi08G000109	Cucurbita moschata (Rifu)	cmowgoB0214
Bhi08G000109	Cucurbita moschata (Rifu)	cmowgoB0259
Bhi08G000109	Cucurbita pepo (Zucchini)	cpewgoB0636
Bhi08G000109	Cucurbita pepo (Zucchini)	cpewgoB1056
Bhi08G000109	Wild cucumber (PI 183967)	cpiwgoB049
Bhi08G000109	Cucumber (Chinese Long) v3	cucwgoB051
Bhi08G000109	Cucumber (Chinese Long) v2	cuwgoB049
Bhi08G000109	Bottle gourd (USVL1VR-Ls)	lsiwgoB337
Bhi08G000109	Melon (DHL92) v3.6.1	medwgoB176
Bhi08G000109	Melon (DHL92) v3.5.1	mewgoB174
Bhi08G000109	Watermelon (Charleston Gray)	wcgwgoB243
Bhi08G000109	Watermelon (97103) v2	wgowmbB461
Bhi08G000109	Watermelon (97103) v1	wgowmB499
Bhi08G000109	Watermelon (97103) v1	wgowmB514
Bhi08G000109	Silver-seed gourd	carwgoB0216