Bhi08G000059 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G000059
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	pyruvate dehydrogenase (Acetyl-transferring) kinase, mitochondrial
Location	chr8 : 2529615 .. 2529830 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTGGTTCGAAGCCCTCTCCCAAGAATTTGCTCATTTCTTCTCAGTTTCTTCACAAGGAGCTTATTCCAATTCGGATTGCTAGAAGAGCTATTGAACTTGAGAATCTTCCTTATGGCCTCTATGTGAAACCTGCTGTTTTGATTGTCTTTTTCTTTTCCTTTCGTTTTTGTTTCTCCTTATATATGCTTTGCATTTTGATGAATTGGTAG

mRNA sequence

ATGGAGTTTGGTTCGAAGCCCTCTCCCAAGAATTTGCTCATTTCTTCTCAGTTTCTTCACAAGGAGCTTATTCCAATTCGGATTGCTAGAAGAGCTATTGAACTTGAGAATCTTCCTTATGGCCTCTATGTGAAACCTGCTGTTTTGATTGTCTTTTTCTTTTCCTTTCGTTTTTGTTTCTCCTTATATATGCTTTGCATTTTGATGAATTGGTAG

Coding sequence (CDS)

ATGGAGTTTGGTTCGAAGCCCTCTCCCAAGAATTTGCTCATTTCTTCTCAGTTTCTTCACAAGGAGCTTATTCCAATTCGGATTGCTAGAAGAGCTATTGAACTTGAGAATCTTCCTTATGGCCTCTATGTGAAACCTGCTGTTTTGATTGTCTTTTTCTTTTCCTTTCGTTTTTGTTTCTCCTTATATATGCTTTGCATTTTGATGAATTGGTAG

Protein sequence

MEFGSKPSPKNLLISSQFLHKELIPIRIARRAIELENLPYGLYVKPAVLIVFFFSFRFCFSLYMLCILMNW

Homology

[Close]

BLAST of Bhi08G000059 vs. Swiss-Prot
Match: sp|Q9SBJ1|PDK_ARATH ([Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PDK PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-13
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1  MEFGSKPSPKNLLISSQFLHKELIPIRIARRAIELENLPYGLYVKPAVLIV---FFFSFR 58
          MEFGSKP+ +NLLIS+QFLHKEL PIR+ARRAIEL+ LPYGL  KPAVL V   +  SFR
Sbjct: 35 MEFGSKPTERNLLISAQFLHKEL-PIRVARRAIELQTLPYGLSDKPAVLKVRDWYLESFR 93

[Close]

BLAST of Bhi08G000059 vs. TAIR10
Match: AT3G06483.1 (pyruvate dehydrogenase kinase)

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-14
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1  MEFGSKPSPKNLLISSQFLHKELIPIRIARRAIELENLPYGLYVKPAVLIV---FFFSFR 58
          MEFGSKP+ +NLLIS+QFLHKEL PIR+ARRAIEL+ LPYGL  KPAVL V   +  SFR
Sbjct: 35 MEFGSKPTERNLLISAQFLHKEL-PIRVARRAIELQTLPYGLSDKPAVLKVRDWYLESFR 93

[Close]

BLAST of Bhi08G000059 vs. TrEMBL
Match: tr|A0A0A0L984|A0A0A0L984_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171100 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-14
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MEFGSKPSPKNLLISSQFLHKELIPIRIARRAIELENLPYGLYVKPAVLIV 52
          MEFGSKP+PKNLLIS+QFLHKEL PIRIARRAIELENLPYGL +KPAVL V
Sbjct: 35 MEFGSKPTPKNLLISAQFLHKEL-PIRIARRAIELENLPYGLSMKPAVLKV 84

[Close]

BLAST of Bhi08G000059 vs. TrEMBL
Match: tr|A0A1S3AYB5|A0A1S3AYB5_CUCME (pyruvate dehydrogenase (Acetyl-transferring) kinase, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483922 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-13
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MEFGSKPSPKNLLISSQFLHKELIPIRIARRAIELENLPYGLYVKPAVLIV 52
          MEFGS+P+PKNLLIS+QFLHKEL PIRIARR +ELENLPYGL +KPAVL V
Sbjct: 35 MEFGSRPTPKNLLISAQFLHKEL-PIRIARRVVELENLPYGLSLKPAVLKV 84

[Close]

BLAST of Bhi08G000059 vs. TrEMBL
Match: tr|A0A1S3AXA7|A0A1S3AXA7_CUCME (pyruvate dehydrogenase (Acetyl-transferring) kinase, mitochondrial isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483922 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-13
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MEFGSKPSPKNLLISSQFLHKELIPIRIARRAIELENLPYGLYVKPAVLIV 52
          MEFGS+P+PKNLLIS+QFLHKEL PIRIARR +ELENLPYGL +KPAVL V
Sbjct: 35 MEFGSRPTPKNLLISAQFLHKEL-PIRIARRVVELENLPYGLSLKPAVLKV 84

[Close]

BLAST of Bhi08G000059 vs. TrEMBL
Match: tr|A0A1S3AYC7|A0A1S3AYC7_CUCME (pyruvate dehydrogenase (Acetyl-transferring) kinase, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483922 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-13
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MEFGSKPSPKNLLISSQFLHKELIPIRIARRAIELENLPYGLYVKPAVLIV 52
          MEFGS+P+PKNLLIS+QFLHKEL PIRIARR +ELENLPYGL +KPAVL V
Sbjct: 35 MEFGSRPTPKNLLISAQFLHKEL-PIRIARRVVELENLPYGLSLKPAVLKV 84

[Close]

BLAST of Bhi08G000059 vs. TrEMBL
Match: tr|A0A1S3BLE8|A0A1S3BLE8_CUCME (LOW QUALITY PROTEIN: pyruvate dehydrogenase (Acetyl-transferring) kinase, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103490853 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-13
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MEFGSKPSPKNLLISSQFLHKELIPIRIARRAIELENLPYGLYVKPAVLIV---FFFSFR 58
          MEFGSKP+ KNLLIS+QFLHKEL PIRIARRAIELENLPYGL VKPAVL V   +  SFR
Sbjct: 35 MEFGSKPTAKNLLISAQFLHKEL-PIRIARRAIELENLPYGLSVKPAVLKVRDWYLDSFR 93

[Close]

BLAST of Bhi08G000059 vs. NCBI nr
Match: XP_004147627.2 (PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Cucumis sativus] >KGN57202.1 hypothetical protein Csa_3G171100 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-14
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MEFGSKPSPKNLLISSQFLHKELIPIRIARRAIELENLPYGLYVKPAVLIV 52
          MEFGSKP+PKNLLIS+QFLHKEL PIRIARRAIELENLPYGL +KPAVL V
Sbjct: 35 MEFGSKPTPKNLLISAQFLHKEL-PIRIARRAIELENLPYGLSMKPAVLKV 84

[Close]

BLAST of Bhi08G000059 vs. NCBI nr
Match: XP_022979822.1 (pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Cucurbita maxima])

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-13
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MEFGSKPSPKNLLISSQFLHKELIPIRIARRAIELENLPYGLYVKPAVLIV---FFFSFR 58
          MEFG KP+PKNLLIS+QFLHKEL PIRIARRAIELENLPYGL VKPAVL V   +  SFR
Sbjct: 35 MEFGLKPTPKNLLISAQFLHKEL-PIRIARRAIELENLPYGLSVKPAVLKVRDWYLDSFR 93

[Close]

BLAST of Bhi08G000059 vs. NCBI nr
Match: XP_023528572.1 (pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-13
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MEFGSKPSPKNLLISSQFLHKELIPIRIARRAIELENLPYGLYVKPAVLIV---FFFSFR 58
          MEFG KP+PKNLLIS+QFLHKEL PIRIARRAIELENLPYGL VKPAVL V   +  SFR
Sbjct: 35 MEFGLKPTPKNLLISAQFLHKEL-PIRIARRAIELENLPYGLSVKPAVLKVRDWYLDSFR 93

[Close]

BLAST of Bhi08G000059 vs. NCBI nr
Match: ADN34036.1 (mitochondrial pyruvate dehydrogenase kinase [Cucumis melo subsp. melo])

HSP 1 Score: 83.2 bits (204), Expect = 3.9e-13
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MEFGSKPSPKNLLISSQFLHKELIPIRIARRAIELENLPYGLYVKPAVLIV 52
          MEFGS+P+PKNLLIS+QFLHKEL PIRIARR +ELENLPYGL +KPAVL V
Sbjct: 35 MEFGSRPTPKNLLISAQFLHKEL-PIRIARRVVELENLPYGLSLKPAVLKV 84

[Close]

BLAST of Bhi08G000059 vs. NCBI nr
Match: XP_008448791.1 (PREDICTED: LOW QUALITY PROTEIN: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial-like [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 3.9e-13
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MEFGSKPSPKNLLISSQFLHKELIPIRIARRAIELENLPYGLYVKPAVLIV---FFFSFR 58
          MEFGSKP+ KNLLIS+QFLHKEL PIRIARRAIELENLPYGL VKPAVL V   +  SFR
Sbjct: 35 MEFGSKPTAKNLLISAQFLHKEL-PIRIARRAIELENLPYGLSVKPAVLKVRDWYLDSFR 93

The following BLAST results are available for this feature:

BLAST of Bhi08G000059 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SBJ1\|PDK_ARATH	2.7e-13	71.67	[Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial OS=Arabidop...	[more]

BLAST of Bhi08G000059 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06483.1	1.5e-14	71.67	pyruvate dehydrogenase kinase	[more]

BLAST of Bhi08G000059 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L984\|A0A0A0L984_CUCSA	3.1e-14	88.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171100 PE=4 SV=1	[more]
tr\|A0A1S3AYB5\|A0A1S3AYB5_CUCME	2.6e-13	82.35	pyruvate dehydrogenase (Acetyl-transferring) kinase, mitochondrial isoform X1 OS...	[more]
tr\|A0A1S3AXA7\|A0A1S3AXA7_CUCME	2.6e-13	82.35	pyruvate dehydrogenase (Acetyl-transferring) kinase, mitochondrial isoform X3 OS...	[more]
tr\|A0A1S3AYC7\|A0A1S3AYC7_CUCME	2.6e-13	82.35	pyruvate dehydrogenase (Acetyl-transferring) kinase, mitochondrial isoform X2 OS...	[more]
tr\|A0A1S3BLE8\|A0A1S3BLE8_CUCME	2.6e-13	80.00	LOW QUALITY PROTEIN: pyruvate dehydrogenase (Acetyl-transferring) kinase, mitoch...	[more]

BLAST of Bhi08G000059 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147627.2	4.7e-14	88.24	PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [C...	[more]
XP_022979822.1	2.3e-13	80.00	pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Cucurbita ma...	[more]
XP_023528572.1	2.3e-13	80.00	pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Cucurbita pe...	[more]
ADN34036.1	3.9e-13	82.35	mitochondrial pyruvate dehydrogenase kinase [Cucumis melo subsp. melo]	[more]
XP_008448791.1	3.9e-13	80.00	PREDICTED: LOW QUALITY PROTEIN: pyruvate dehydrogenase (acetyl-transferring) kin...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004672	protein kinase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR039028	BCKD/PDK
IPR018955	BCDHK/PDK_N
IPR036784	AK/P_DHK_N_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005759	mitochondrial matrix
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000059	Bhi08M000059	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036784	Alpha-ketoacid/pyruvate dehydrogenase kinase, N-terminal domain superfamily	GENE3D	G3DSA:1.20.140.20		coord: 1..53 e-value: 2.0E-9 score: 39.3
IPR036784	Alpha-ketoacid/pyruvate dehydrogenase kinase, N-terminal domain superfamily	SUPERFAMILY	SSF69012	alpha-ketoacid dehydrogenase kinase, N-terminal domain	coord: 2..52
IPR018955	Branched-chain alpha-ketoacid dehydrogenase kinase/Pyruvate dehydrogenase kinase, N-terminal	PFAM	PF10436	BCDHK_Adom3	coord: 1..49 e-value: 5.8E-10 score: 39.1
IPR039028	PDK/BCKDK protein kinase	PANTHER	PTHR11947	PYRUVATE DEHYDROGENASE KINASE	coord: 1..51
None	No IPR available	PANTHER	PTHR11947:SF24	SUBFAMILY NOT NAMED	coord: 1..51

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G000059	Cucumber (Gy14) v1	cgywgoB422
Bhi08G000059	Cucumber (Gy14) v2	cgybwgoB046
Bhi08G000059	Cucurbita maxima (Rimu)	cmawgoB0265
Bhi08G000059	Cucurbita maxima (Rimu)	cmawgoB0267
Bhi08G000059	Cucurbita moschata (Rifu)	cmowgoB0259
Bhi08G000059	Cucurbita pepo (Zucchini)	cpewgoB0636
Bhi08G000059	Cucurbita pepo (Zucchini)	cpewgoB0660
Bhi08G000059	Wild cucumber (PI 183967)	cpiwgoB049
Bhi08G000059	Cucumber (Chinese Long) v3	cucwgoB051
Bhi08G000059	Cucumber (Chinese Long) v2	cuwgoB049
Bhi08G000059	Bottle gourd (USVL1VR-Ls)	lsiwgoB337
Bhi08G000059	Melon (DHL92) v3.6.1	medwgoB176
Bhi08G000059	Melon (DHL92) v3.5.1	mewgoB174
Bhi08G000059	Melon (DHL92) v3.5.1	mewgoB426
Bhi08G000059	Watermelon (Charleston Gray)	wcgwgoB232
Bhi08G000059	Watermelon (97103) v2	wgowmbB451
Bhi08G000059	Watermelon (97103) v1	wgowmB506
Bhi08G000059	Watermelon (97103) v1	wgowmB510