Bhi07G000890 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi07G000890
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Ribonuclease H
Location	chr7 : 34147724 .. 34147889 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTTCTGGTGGGGTTCTTCGAATTCTAAGAAGAAAAGTCACTGGTTAAGCTGGGATAAGTTGTGCTTGCTTAAAGTATTTGGTGGCCTTAACTTCAAGGATATCAATCTTTTCAATCAAGCCCTTCTAGCCAAGCAAGCTTGGAACTTATTAACTAAGACTTAA

mRNA sequence

CCATTTCTGGTGGGGTTCTTCGAATTCTAAGAAGAAAAGTCACTGGTTAAGCTGGGATAAGTTGTGCTTGCTTAAAGTATTTGGTGGCCTTAACTTCAAGGATATCAATCTTTTCAATCAAGCCCTTCTAGCCAAGCAAGCTTGGAACTTATTAACTAAGACTTAA

Coding sequence (CDS)

CCATTTCTGGTGGGGTTCTTCGAATTCTAAGAAGAAAAGTCACTGGTTAAGCTGGGATAAGTTGTGCTTGCTTAAAGTATTTGGTGGCCTTAACTTCAAGGATATCAATCTTTTCAATCAAGCCCTTCTAGCCAAGCAAGCTTGGAACTTATTAACTAAGACTTAA

Protein sequence

HFWWGSSNSKKKSHWLSWDKLCLLKVFGGLNFKDINLFNQALLAKQAWNLLTKT

Homology

[Close]

BLAST of Bhi07G000890 vs. Swiss-Prot
Match: sp|P93295|M310_ARATH (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.9e-09
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 2  FWWGSSNSKKKSHWLSWDKLCLLKV-FGGLNFKDINLFNQALLAKQAWNLL 52
          FWW S  +K+K  W++W KLC  K   GGL F+D+  FNQALLAKQ++ ++
Sbjct: 28 FWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRII 78

[Close]

BLAST of Bhi07G000890 vs. Swiss-Prot
Match: sp|P0C2F6|RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-05
Identity = 22/50 (44.00%), Postives = 29/50 (58.00%), Query Frame = 0


Query: 2   FWWGSSNSKKKSHWLSWDKLCLLKVFGGLNFKDINLFNQALLAKQAWNLL 52
           F WGS+  KKK H + W K+C  K  GGL  +     N+AL++K  W LL
Sbjct: 73  FLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLL 122

[Close]

BLAST of Bhi07G000890 vs. TAIR10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-10
Identity = 25/52 (48.08%), Postives = 31/52 (59.62%), Query Frame = 0


Query: 2  FWWGSSNSKKKSHWLSWDKLCLLKVFGGLNFKDINLFNQALLAKQAWNLLTK 54
          FWW +    K  HW +WD L   K  GG+ FKDI  FN ALL KQ W +L++
Sbjct: 28 FWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLALLGKQMWRMLSR 79

[Close]

BLAST of Bhi07G000890 vs. TAIR10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 60.1 bits (144), Expect = 4.9e-10
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 2  FWWGSSNSKKKSHWLSWDKLCLLKV-FGGLNFKDINLFNQALLAKQAWNLL 52
          FWW S  +K+K  W++W KLC  K   GGL F+D+  FNQALLAKQ++ ++
Sbjct: 28 FWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRII 78

[Close]

BLAST of Bhi07G000890 vs. TrEMBL
Match: tr|Q9SK98|Q9SK98_ARATH (Very similar to retrotransposon reverse transcriptase OS=Arabidopsis thaliana OX=3702 GN=F12K8.9 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.5e-13
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 2   FWWGSSNSKKKSHWLSWDKLCLLKVFGGLNFKDINLFNQALLAKQAWNLL 52
           FWW +++ ++K HWLSW+KLCL K  GGL F+DI LFNQALLAKQAW LL
Sbjct: 673 FWWSANDHQRKIHWLSWEKLCLPKEHGGLGFRDIGLFNQALLAKQAWRLL 722

[Close]

BLAST of Bhi07G000890 vs. TrEMBL
Match: tr|A0A0J8B9Y6|A0A0J8B9Y6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g095640 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.8e-13
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 2   FWWGSSNSKKKSHWLSWDKLCLLKVFGGLNFKDINLFNQALLAKQAWNLLTKT 55
           FWWG+  +++K HW+SW+KLCL K +GG+ F+D+ +FNQALLAKQ W LL  T
Sbjct: 305 FWWGARGTERKMHWVSWEKLCLPKSYGGMGFRDLKVFNQALLAKQGWRLLCDT 357

[Close]

BLAST of Bhi07G000890 vs. TrEMBL
Match: tr|Q84MQ3|Q84MQ3_ORYSJ (Putative reverse transcriptase OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0030J19.11 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-12
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 1   HFWWGSSNSKKKSHWLSWDKLCLLKVFGGLNFKDINLFNQALLAKQAWNLLT 53
           +FWWG S+ ++K HW+SWDKL   K  GGL F+D+N FNQALLA+QAW LLT
Sbjct: 309 NFWWGHSSDERKVHWISWDKLTSPKSHGGLGFRDMNCFNQALLARQAWRLLT 360

[Close]

BLAST of Bhi07G000890 vs. TrEMBL
Match: tr|A2XHV0|A2XHV0_ORYSI (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_11988 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-12
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 1   HFWWGSSNSKKKSHWLSWDKLCLLKVFGGLNFKDINLFNQALLAKQAWNLLT 53
           +FWWG S+ ++K HW+SWDKL   K  GGL F+D+N FNQALLA+QAW LLT
Sbjct: 309 NFWWGHSSDERKVHWISWDKLTSPKSHGGLGFRDMNCFNQALLARQAWRLLT 360

[Close]

BLAST of Bhi07G000890 vs. TrEMBL
Match: tr|M8B835|M8B835_AEGTA (ABC transporter C family member 10 OS=Aegilops tauschii OX=37682 GN=F775_17562 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.9e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 1   HFWWGSSNSKKKSHWLSWDKLCLLKVFGGLNFKDINLFNQALLAKQAWNLL 52
           +FWWG  N ++K HWL+WDKL + K  GG+ F+D+ LFNQALLAKQAW L+
Sbjct: 95  NFWWGDENDRRKIHWLAWDKLLMPKEKGGMGFRDLRLFNQALLAKQAWRLI 145

[Close]

BLAST of Bhi07G000890 vs. NCBI nr
Match: XP_009126341.1 (PREDICTED: uncharacterized protein LOC103851249 [Brassica rapa])

HSP 1 Score: 85.5 bits (210), Expect = 6.0e-14
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 2   FWWGSSNSKKKSHWLSWDKLCLLKVFGGLNFKDINLFNQALLAKQAWNLLT 53
           FWW +S  K K HWLSWDKLC+ K  GG+ FKDI LFNQALLAKQAW +LT
Sbjct: 663 FWWQASEDKSKIHWLSWDKLCISKEMGGMGFKDIELFNQALLAKQAWRILT 713

[Close]

BLAST of Bhi07G000890 vs. NCBI nr
Match: XP_009150816.1 (PREDICTED: uncharacterized protein LOC103874152 [Brassica rapa])

HSP 1 Score: 85.5 bits (210), Expect = 6.0e-14
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 2   FWWGSSNSKKKSHWLSWDKLCLLKVFGGLNFKDINLFNQALLAKQAWNLLT 53
           FWW +S  K K HWLSWDKLC+ K  GG+ FKDI LFNQALLAKQAW +LT
Sbjct: 663 FWWQASEDKSKIHWLSWDKLCISKEMGGMGFKDIELFNQALLAKQAWRILT 713

[Close]

BLAST of Bhi07G000890 vs. NCBI nr
Match: XP_013738713.1 (uncharacterized protein LOC106441439 [Brassica napus])

HSP 1 Score: 85.5 bits (210), Expect = 6.0e-14
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 2   FWWGSSNSKKKSHWLSWDKLCLLKVFGGLNFKDINLFNQALLAKQAWNLLT 53
           FWW +S  K K HWLSWDKLC+ K  GG+ FKDI LFNQALLAKQAW +LT
Sbjct: 663 FWWQASEDKSKIHWLSWDKLCISKEMGGMGFKDIELFNQALLAKQAWRILT 713

[Close]

BLAST of Bhi07G000890 vs. NCBI nr
Match: XP_013646207.1 (uncharacterized protein LOC106350924 [Brassica napus])

HSP 1 Score: 85.5 bits (210), Expect = 6.0e-14
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 2   FWWGSSNSKKKSHWLSWDKLCLLKVFGGLNFKDINLFNQALLAKQAWNLLT 53
           FWW +S  K K HWLSWDKLC+ K  GG+ FKDI LFNQALLAKQAW +LT
Sbjct: 663 FWWQASEDKSKIHWLSWDKLCISKEMGGMGFKDIELFNQALLAKQAWRILT 713

[Close]

BLAST of Bhi07G000890 vs. NCBI nr
Match: XP_013673759.1 (uncharacterized protein LOC106378122 [Brassica napus])

HSP 1 Score: 85.5 bits (210), Expect = 6.0e-14
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 2   FWWGSSNSKKKSHWLSWDKLCLLKVFGGLNFKDINLFNQALLAKQAWNLLT 53
           FWW +S  K K HWLSWDKLC+ K  GG+ FKDI LFNQALLAKQAW +LT
Sbjct: 663 FWWQASEDKSKIHWLSWDKLCISKEMGGMGFKDIELFNQALLAKQAWRILT 713

The following BLAST results are available for this feature:

BLAST of Bhi07G000890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P93295\|M310_ARATH	8.9e-09	50.98	Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|P0C2F6\|RNHX1_ARATH	1.2e-05	44.00	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of Bhi07G000890 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G29090.1	1.7e-10	48.08	Ribonuclease H-like superfamily protein	[more]
ATMG00310.1	4.9e-10	50.98	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

BLAST of Bhi07G000890 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|Q9SK98\|Q9SK98_ARATH	7.5e-13	68.00	Very similar to retrotransposon reverse transcriptase OS=Arabidopsis thaliana OX...	[more]
tr\|A0A0J8B9Y6\|A0A0J8B9Y6_BETVU	9.8e-13	58.49	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g09564...	[more]
tr\|Q84MQ3\|Q84MQ3_ORYSJ	2.9e-12	63.46	Putative reverse transcriptase OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNB...	[more]
tr\|A2XHV0\|A2XHV0_ORYSI	2.9e-12	63.46	Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_11988 PE=4...	[more]
tr\|M8B835\|M8B835_AEGTA	4.9e-12	60.78	ABC transporter C family member 10 OS=Aegilops tauschii OX=37682 GN=F775_17562 P...	[more]

BLAST of Bhi07G000890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_009126341.1	6.0e-14	70.59	PREDICTED: uncharacterized protein LOC103851249 [Brassica rapa]	[more]
XP_009150816.1	6.0e-14	70.59	PREDICTED: uncharacterized protein LOC103874152 [Brassica rapa]	[more]
XP_013738713.1	6.0e-14	70.59	uncharacterized protein LOC106441439 [Brassica napus]	[more]
XP_013646207.1	6.0e-14	70.59	uncharacterized protein LOC106350924 [Brassica napus]	[more]
XP_013673759.1	6.0e-14	70.59	uncharacterized protein LOC106378122 [Brassica napus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi07M000890	Bhi07M000890	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi07G000890	Cucurbita moschata (Rifu)	cmowgoB0891
Bhi07G000890	Cucurbita moschata (Rifu)	cmowgoB0893
Bhi07G000890	Cucurbita pepo (Zucchini)	cpewgoB0556
Bhi07G000890	Cucurbita pepo (Zucchini)	cpewgoB0558
Bhi07G000890	Wild cucumber (PI 183967)	cpiwgoB518
Bhi07G000890	Cucumber (Chinese Long) v3	cucwgoB525
Bhi07G000890	Cucumber (Chinese Long) v2	cuwgoB514
Bhi07G000890	Bottle gourd (USVL1VR-Ls)	lsiwgoB388
Bhi07G000890	Melon (DHL92) v3.6.1	medwgoB082
Bhi07G000890	Melon (DHL92) v3.5.1	mewgoB082
Bhi07G000890	Watermelon (Charleston Gray)	wcgwgoB319
Bhi07G000890	Watermelon (97103) v2	wgowmbB526
Bhi07G000890	Watermelon (97103) v1	wgowmB561
Bhi07G000890	Silver-seed gourd	carwgoB0984
Bhi07G000890	Silver-seed gourd	carwgoB0992
Bhi07G000890	Cucumber (Gy14) v1	cgywgoB338
Bhi07G000890	Cucumber (Gy14) v2	cgybwgoB488
Bhi07G000890	Cucurbita maxima (Rimu)	cmawgoB0892
Bhi07G000890	Cucurbita maxima (Rimu)	cmawgoB0894