Bhi07G000278 (gene) Wax gourd

Overview
NameBhi07G000278
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionexosome complex component RRP42-like
Locationchr7 : 14776461 .. 14782991 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAAAAAATCAAATCTCTCCCCTCCTCACTCACGCCTGCAGGCTCCAGAACACCCCCTCGTTTTCTTCAGCCGCCAGACCGCTGCTTGTCGCCGACAGCAGTGGCCGGCACTCCAGTTCCGTCAACCGCCGCCTCCACGAGTACCAGCGCCGCCAATTTTCCCTCCACTCGCTCGTCTTCCGTGCACCAGCGCGCACGCCGGCCGTCGATCCCTGCAGTCGTGCGCCGTCCAGTCGCCAGCCGTCGCATACCTCAACGCCGGTGGTTGGCAGTGCCGTTTTAGCAGCCGTCTCCTCGACGGAGTTTGATTTGGGGTAAGATTGTACTATTTTAATTGAGTTTCTTGGAGATTCTTGAATACCCATCAACTCTTGGCCTCAAGTGGTAGGTACCCATTGTGTTTTGGATTTAGATTGAAGATTGGGAATAATTTTAGTTGCTATCCGGCGGTGTTTTGGGCGTTCGACGTGGGTAAGTAATGATTTCTTTGGTAAATTCTTAGTTACTCATTATGTTATGGTTTGATTTATAATACCCATGAGGATTTTGTTCTTAGATTCAAGGGGTTAAAGTGTGTTAAGTCTTCTGTTAGCGAATTTAAGGCTGATTCGTCAACTTGTTGGTAGGTTCTATAGATTTATAATCGTTTTGGTTGTTTGTGGCTGTTGTGAATTGGGTTTTAGAACCCTTACTTGTGCTTTATGTTTAGGTTGAATTCTTGTTTTGTGGCTTGGAAGTGGTTTTGGTTTAAGCTGCAAATTGGGGTTAATTCAAGAAGAGTTTAATTGCTCGAATTCATTTTGAGGTAAGTGGCTTTACTATTAGTACGTCTACATGTGCACTCTAGTTCCACAGTGTTGGTTTTAATTGAATTTAGAAGCACGTTTAGACCTCGTGAATATGCCATGTATGTGAAGTAACCAAGTTATGCATATGCTAGAGCTATGACAATGTACTATATGTTGTGAGATGTATAGTGATATGAGATACTTAGAAGCATGATAAGAGACAAGGAAAAATGATATGCTTTATGAAGAGCGATGTTATGAGCATGTTTGAATCATGACATGCACTATGAACCCTTTGTGAAGCAAGCCAAGTTAGAACTAGAGCCATTGGGCTTTGTGTTACTTGTGACTACCCCAATAGGGGTTAGTATGGTAACTAGTGAGAAAGTTAGGGACTGTCAGTTAACTGTGTGTGATTGAGTCTTGAATGTGTCACTGATAGTGCTGAATATGGGTTTCGATGTCATTCGGGGAATGGAGTGGTTAGTTGAAAACCACACGATTATTGACTGTTTTCATAGGGAGGAGGTGGTCCAGGTAAGCTCCAAATTTAAGGGGAGTAGAACGGAACATTTGGTTTTAGCATTGAAGGCAAGAAAGCTAATCATCCAAGGAGCCTGGGGTTATTGGCTAATGTGATCGATACGAGTTGTGGTAAGAGAGGCATAACCTCAGTACCGGTGGTGCGGGAGTCTCAAATGTGTTCCCTGAGGATCTCCTAGGACTACCCCCAGCTCCAGAGGTAGATTTTAGCATCAAGTTGGAGCCAGAGATGACTCTCATTTCTAGGGCCCCATAAAGAATGGCCCCAGCGGAGCTGAAAGAACTCAAGTTGCAATTGCAGGAGTTGTTGGACAAAGGGTTCATACGTCCTAGTGTGTCGCTATGGGGTGCTTCGGCTTTGTTTGTTAGAAGGAAGATTAGGACTATGCACTTGGCATAGACTACAAGGAACTAAACAAGGTGACAATGAAAAATAAGTATCCTCTTCTTAGGATTGATGATTTGTTCGACTAGCTACAAGGGGCAACCCTATTCTCAAAGATCTGGAGGCATTACCTCTACGAGGAGAAGGTCTAGATCTTTACCGATCACAAGAGCCTAAAGTACTTCTTCACTCAGAAGGAGTTGAACATGTGACAACATAGGTGGTTAGAATTGGTCATAGACTACGACAATCTTGTATCATCCAAGTAACGCCAATGTAGTGGTTGATGCTCTTAACAAGAAGGCGGTACATTCGTTGGCGTTGATCATAAGTCAAGCTCACATTTGTAGAGACTTTGAGTGCAGAGATAGCAGTAGCAGTGGTAGTTGGGGAAGCTACCTCTTTGTTGGCTCAGTTGTCAGTACAGTCCACATTGAGGCAGCGTATCATTGAGGGTCAGCAGAATGACCCTAGCTTAGCCACAGTATTTCGCCAGGAGAAGGTCGGAGGAAGAGTGAATTCTCTTTGTTGTCAGATAACAGCCTCGGGTATCAGGGGCGTCTGTGTGTGCCGGAGGATGCTGGACTTAAGGCAAAGTTGTTGGCTAAGGCTCACAACTTTCGATTTTCCATACACCTGGGTGGCACTAAGATGTACCTAGACTTTAAGGGATATTGCCAATTTTGTTTGCAAGTGCTTGATGTGCCAGCAGGTTAATGCTCCAAAATAGAAACCAGTGTGGTTGTTACACCCACTCAAAGTGCTAGAGTGGAAGTGAGAGCAAGTGTTGATGGATTTCATTGCGGGGTTGCTGCGGACTGCAAAAGGTCATACTATAATATGTGATGTAGTAGATTGACTTGCCAAGTTGGCCCACTTCATTCCAAGGAGGCCTTCGTTTTTAACGGATAGATGGGCACAATTATACATGAAGGAGATCATTAGGCTGCACGGGGTGCCAGTTTCTATCATTTCTGATTGAGACCCCTGCTTCACATCTAACTTTTGGTAAGGGCTGTAGAGGGCATTATGTACTCGAGTGGAGTTGAATACATCTTTCCATCCTCAGACATACGGCCAAACAGAGCAGTTGAATGTGATTCTAGGGATATGTTGCAAGCTTCTGTGTTGGATTTTAGAGATATTGGGACTCTCACTTGCAACTGGTGGAGTTCGCCTATAATAACAGTTATCAGGTCACGATTGGTATGGTGCCTTATGAGGCTCTTTATGGAAGGAAATGTAGATCTCCTGTTCGTTGGGGTGAGGTTGGAGAGCACAAATTGTTGGGTCCAGAGTTAGTCAAGAGGACGAAAGAAGGAATTCAAAGGATTAGAAGAAGAATGAAAATGGCCCAAAGTAGGATAAGGTCTTCTTGAAAGTGGCTCCAATAAAAGGTATCTTGAGGTTTGGAAGGAAGGGCAAGTTGAGCCCACGATTCATAGGGCCATTTGAGGTCTTGTTGCAAATTGGTCCGGTAGCTTATCATTTGGCTTTACCTCCATCTCTCTCGATAGTGCATAATGTGTTTCATGTATCTATATTACGTGGCTACATAACAGATCTTGCCCATGTGTTGGATTTTCAAGCCTTGCATTTGAGTGAGAATCTGAGTTACAAAGAGGCACCGATGCAGATTTTTGCAAGGGATGTAAAATTTTTGTGTAACTGGGAGATAGCACTGGTGAAGGTGCTCTAGCGGAACCTTCAGATTGAGGAATCGATGTGGCAGCATGAGGACAAAATGAGGGCTAAGCACCGTAAAAGTTAGTCTTTCGGACAGCTCTTGAATTTAAGTCTCCTTTGAACTCACTCCAATAGTGAACACTACAGGCCTCTTGCCGGCGAAGCACCTTAAGAGTTTGTAGCAGACCCGCTGCCGTCCGTTGCCAACGTCTACATTCGAGTCGTGCCATGAGTAACATTTACCTTCTCATTTTCTTTCTTCTCAGTCTTTAATCTCTGTTTATGCTAAAACCCCAATCCCAATCCTACTCAACCCAATATTGCGAAAACATTGTCAAAACCTTCTGCTTCTGGGTTCTAATTTCCAGTTGGTTTTGTGTGCTTCATCAGATTCTTTTTCCTGAAAAGTAGGAATGGTGGGCCTTTCTATTGGAGAGAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACTGATGGTCGAGGGAGACTAACTTATCGACCAATTTCTGTAGAAACTGATGTGATCTCTCAGGTATAATCAAAATAAGGTAGTGATTCTGCTTTCTTTGGTCCTTCTTCCCCTTTATGTGTTTTAATCTCGCAATGCTCTTAATTTTAGGCAAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAAGTTATTGCTACCGTGAAGGTATAAAATGTTTGAGCTTCTTTCTTTTTGAATTATGCTAGTCACTACATTTTAACCGAGTGGCATGCTCCTGGTTCTGCTGCAAAAGATTGAAACCCTTGTTTTTTTTTTGTTTTCGTTTGTGAAACTTTAAACGTTTATTCAGTATGATAATGACTACTTAGATATGTTGAAGTGCAGGCTGAACTTGGAAGGCCTAATCCAATGCAGCCTGACAAAGGGAAGGTTTCGATCTCTGTTGATTGTAGCCCAATTGCGGAGCCAGCGTTTGAGGTGTGGTAACTTGCATTTTTCTTAACAAAATTTGTTCATCCATGTGTTGTAGGATTGCCAGTGAATGGTTTGGTTTAATGGTGTTTTGTTGGAAGCAATCGGAATTTCATTTTATGTTGGAGAATAGGAGGTAATAATAAGTGAAAAATGGAAGGTTGGGCATCAACAGCTAGATTTGATATTCAGTACATAGTTCTTGTTGATAAAATGAAATTGATAGAAAAATAATACTGCTGAAGCAATAATATTATCCATGAGAATAGTGCATGGTGGAGGAGCACCCCTGCCCCTTCGTGAAAAGGGTCGTTCGTTGTGATTGGCTTGTTTTTGTGGTATTTTATGGGGTTGTTGGCGTGAAAGAAACAATAGGTTTTTCAGGGGGATTGAGGAGTCTTAGGTCAGGTGCAGTCCTTTGTTAGATTTCAAACCTCTCTAGGTTTTTATTTGTAAATACTCTCTAGGTTTCCATTTTTTTCATTTGTTCACAATGAAAGTAGTGGATCTTTCATCAAACTGGTGTATATCGCATCCACTTGTGCAGTCTTTATTTCCATATGTACTTTTTGCCATGCTTGTAATATTTGGGTTTTCATTGAATATAGGGTAGGGGTGGTGAAGAGTTGTCAACAGAACTCTCGGTCGCTCTCGATCGGTGTCTCTTAGGTGGAAAGAGTGGTTCAGGTTTGACTCATGACTAGAAAAACAGATCAATAACTTTTGCACTTGATGACGAAGTGTGCTTTTGTTGCTTCAGGGGCTGCGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTCTATATTGAGGGCCTGGTCATAAGCTCAGAGGGCAATCTTTTAGATGCCCTTGGAGCTGCCATTAAGGTATATTTTCATTGTTGACTTCTGTCTACTCTTCTGTGTCATTTGTTAACATTAATAACCAAATTTTGTACTTATTGTTTATACTTTACAATGCATCATGACCATATAACCTTGGCTTGTTTAACCAAAACAATATCCAATAAACATCAGTATGATGTTCATTTCTGATTGAGCGAAGTTAAGTTTGGCAACTGAAATCCCTGAAGCCTATATTTGTCTCTTTCAATTTTGAAATCTTTGCTAGGCCATCACATATCAGAGGGGTAAAATGGGAAATTTCCTAATGACAGTTGGCTTCTTAGGAGGGAGAGGTTACTAGCTCTCTTGTGGAAAAGGCTGGTAGTCTAGTGTTGCTGTGTCCATTATCTTTCTTTGTTATTGTTTTCTTTCTACTTTCATTGAAGAAGTATTAGCTCGTGTTTTTCAATTAATATAAAACTTCAACCTTGATACTTCATTAAATCTTTCAATACTCATGGTTACTACGAACAAGATGAAACTAATAAAACTTCCAACTGTTCTTCCCAAGGCTGCTTTGAGCAGTACAGGCATCCCAAAAGTCCACGTTGCTGCAGAATCATCAGCCAACGAACAACCTGAAGTTGATGTAAGTGATGAAGAATTTCTACAGTTCGACACATCTGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAAGCACTACATCATTGATGCTACTTTGGAAGAAGAATCTCAAATGAGCTCTGCAGTCTCCATATCCGTCAACAGGCATGGTCACATATGCGGGTTGACAAAACGTGGCGGTGCAGGGCTCGATCCAAGCATAATTCTCGATATGATATCTGTCGGCAAACATGTCAGTGAAGAGTTACTAGACAAGTTGGACTCAGAGATTGTGGCTGCTCAAGCTGATGAAGAAGAATGACAAAGCTTTTAAAGATCCCTTATTGTTGTTCATCTACATCGTAGAATCTTAGATTGATAATCTTCAATGGAATTCTAGTCTAGATGGTATATTGATGATTGTAAGGTAGCCATCTTGTAAAATTGGTAGTGTTTTGGACCTTTGATTCTGTCATGACATTTGTTCAATGACATAAAGTATGTATCTTTGATCAAAGAGTTAAAGGTTTGAATTATTCATATATTGTTGAGCAAAGAAACAGCTTTATCAGGGAATGACGTACGG

mRNA sequence

GAAAAAAAAATCAAATCTCTCCCCTCCTCACTCACGCCTGCAGGCTCCAGAACACCCCCTCGTTTTCTTCAGCCGCCAGACCGCTGCTTGTCGCCGACAGCAGTGGCCGGCACTCCAGTTCCGTCAACCGCCGCCTCCACGAGTACCAGCGCCGCCAATTTTCCCTCCACTCGCTCGTCTTCCGTGCACCAGCGCGCACGCCGGCCGTCGATCCCTGCAGTCGTGCGCCGTCCAGTCGCCAGCCGTCGCATACCTCAACGCCGGTGGTTGGCAGTGCCGTTTTAGCAGCCGTCTCCTCGACGGAGTTTGATTTGGGATTGAAGATTGGGAATAATTTTAGTTGCTATCCGGCGGTGTTTTGGGCGTTCGACGTGGATTCAAGGGGTTAAAGTGTGTTAAGTCTTCTGTTAGCGAATTTAAGGCTGATTCGTCAACTTGTTGGTTGAATTCTTGTTTTGTGGCTTGGAAGTGGTTTTGGTTTAAGCTGCAAATTGGGGTTAATTCAAGAAGAGTTTAATTGCTCGAATTCATTTTGAGATTCTTTTTCCTGAAAAGTAGGAATGGTGGGCCTTTCTATTGGAGAGAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACTGATGGTCGAGGGAGACTAACTTATCGACCAATTTCTGTAGAAACTGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAAGTTATTGCTACCGTGAAGGCTGAACTTGGAAGGCCTAATCCAATGCAGCCTGACAAAGGGAAGGTTTCGATCTCTGTTGATTGTAGCCCAATTGCGGAGCCAGCGTTTGAGGGTAGGGGTGGTGAAGAGTTGTCAACAGAACTCTCGGTCGCTCTCGATCGGTGTCTCTTAGGTGGAAAGAGTGGTTCAGGGGCTGCGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTCTATATTGAGGGCCTGGTCATAAGCTCAGAGGGCAATCTTTTAGATGCCCTTGGAGCTGCCATTAAGGCTGCTTTGAGCAGTACAGGCATCCCAAAAGTCCACGTTGCTGCAGAATCATCAGCCAACGAACAACCTGAAGTTGATGTAAGTGATGAAGAATTTCTACAGTTCGACACATCTGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAAGCACTACATCATTGATGCTACTTTGGAAGAAGAATCTCAAATGAGCTCTGCAGTCTCCATATCCGTCAACAGGCATGGTCACATATGCGGGTTGACAAAACGTGGCGGTGCAGGGCTCGATCCAAGCATAATTCTCGATATGATATCTGTCGGCAAACATGTCAGTGAAGAGTTACTAGACAAGTTGGACTCAGAGATTGTGGCTGCTCAAGCTGATGAAGAAGAATGACAAAGCTTTTAAAGATCCCTTATTGTTGTTCATCTACATCGTAGAATCTTAGATTGATAATCTTCAATGGAATTCTAGTCTAGATGGTATATTGATGATTGTAAGGTAGCCATCTTGTAAAATTGGTAGTGTTTTGGACCTTTGATTCTGTCATGACATTTGTTCAATGACATAAAGTATGTATCTTTGATCAAAGAGTTAAAGGTTTGAATTATTCATATATTGTTGAGCAAAGAAACAGCTTTATCAGGGAATGACGTACGG

Coding sequence (CDS)

ATGGTGGGCCTTTCTATTGGAGAGAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACTGATGGTCGAGGGAGACTAACTTATCGACCAATTTCTGTAGAAACTGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAAGTTATTGCTACCGTGAAGGCTGAACTTGGAAGGCCTAATCCAATGCAGCCTGACAAAGGGAAGGTTTCGATCTCTGTTGATTGTAGCCCAATTGCGGAGCCAGCGTTTGAGGGTAGGGGTGGTGAAGAGTTGTCAACAGAACTCTCGGTCGCTCTCGATCGGTGTCTCTTAGGTGGAAAGAGTGGTTCAGGGGCTGCGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTCTATATTGAGGGCCTGGTCATAAGCTCAGAGGGCAATCTTTTAGATGCCCTTGGAGCTGCCATTAAGGCTGCTTTGAGCAGTACAGGCATCCCAAAAGTCCACGTTGCTGCAGAATCATCAGCCAACGAACAACCTGAAGTTGATGTAAGTGATGAAGAATTTCTACAGTTCGACACATCTGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAAGCACTACATCATTGATGCTACTTTGGAAGAAGAATCTCAAATGAGCTCTGCAGTCTCCATATCCGTCAACAGGCATGGTCACATATGCGGGTTGACAAAACGTGGCGGTGCAGGGCTCGATCCAAGCATAATTCTCGATATGATATCTGTCGGCAAACATGTCAGTGAAGAGTTACTAGACAAGTTGGACTCAGAGATTGTGGCTGCTCAAGCTGATGAAGAAGAATGA

Protein sequence

MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAAIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANEQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICGLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE
Homology
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BLAST of Bhi07G000278 vs. Swiss-Prot
Match: sp|Q15024|EXOS7_HUMAN (Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3)

HSP 1 Score: 203.4 bits (516), Expect = 3.4e-51
Identity = 110/276 (39.86%), Postives = 168/276 (60.87%), Query Frame = 0 

Query: 2   VGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGRG   YR + VETDV+S  +GSARV++G T+++  VK
Sbjct: 4   VTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAA 121
           AE+G P   +P++G +   VDCS  A P FEGRGG++L TE++  L R +   KS    +
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR-IFNNKS----S 123

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANE 181
           +DL +L +   + CW LY++ L++   GNL DA+  A+KAAL +T IP+V V  +   ++
Sbjct: 124 VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSK 183

Query: 182 QPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICG 241
             E+     + ++     VP IVTL K+G  +++DATL+EE+   +++ +SV   G +  
Sbjct: 184 DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTC 243

Query: 242 LTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEI 278
           + K G   LDP  I +M+  GK V + L   L S +
Sbjct: 244 MRKVGKGSLDPESIFEMMETGKRVGKVLHASLQSVV 274

[Close]
BLAST of Bhi07G000278 vs. Swiss-Prot
Match: sp|Q9D0M0|EXOS7_MOUSE (Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 5.0e-50
Identity = 110/274 (40.15%), Postives = 165/274 (60.22%), Query Frame = 0 

Query: 2   VGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGRG   YR + VETDV+S  +GSARV++G T+++  VK
Sbjct: 4   VALSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAA 121
           AE+G P   +P++G +   VDCS  A P FEGRGG++L TE++  L R +   KS    +
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR-IFNNKS----S 123

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANE 181
           +DL SL +   + CW LY++ L++   GNL DA+  A+KAAL +T IP+V V  +    +
Sbjct: 124 VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAK 183

Query: 182 QPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICG 241
             E+     + ++     VP IVTL K+G  +++DATL+EE+   +++ +SV   G +  
Sbjct: 184 DIELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTC 243

Query: 242 LTKRGGAGLDPSIILDMISVGKHVSEELLDKLDS 276
           + K G   LDP  I +M+   K V + L   L S
Sbjct: 244 MRKVGKGSLDPESIFEMMESSKRVGKVLHVSLQS 272

[Close]
BLAST of Bhi07G000278 vs. Swiss-Prot
Match: sp|Q54VM4|EXOS7_DICDI (Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 GN=exosc7 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.1e-41
Identity = 113/322 (35.09%), Postives = 161/322 (50.00%), Query Frame = 0 

Query: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M  +S  E LFIQ G+  ++R+DGR R+ YR  ++ET  I  ANGSARV++  TEV+  V
Sbjct: 1   MQKISPSESLFIQQGVENNIRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGV 60

Query: 61  KAELGR------PNPMQPDKGK-VSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLG 120
           KAE+         N  Q D  K +  SV+C P A P FEG+G E L+ ELS  L+R    
Sbjct: 61  KAEITHIQSEITSNLQQSDTSKRLVFSVNCCPSASPEFEGKGSEFLNIELSKQLERLYSH 120

Query: 121 GK--------------------------------------SGSGAAIDLSSLIVVEGKLC 180
                                                   + SG   D +   +V GK  
Sbjct: 121 PNVIKNLKLTNPIISNXXXXXXXXXXXXXXXXXXXXXDIITNSG---DDNCFSIVSGKYY 180

Query: 181 WDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANEQPEVDVSDEEFLQF 240
           W LY++ +V+ S+GNL DAL  A ++AL +T IP+V            EV    E+ L  
Sbjct: 181 WTLYVDAIVLDSDGNLFDALSIACRSALQNTRIPRVKAIQGEYEEITFEVSDDPEDTLSL 240

Query: 241 DTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICGLTKRGGAGLDPSII 278
               VP  VTLTK+G  ++ID TL+EE  M++ +++ VN   +IC + K G  GLDP+ I
Sbjct: 241 SIDNVPICVTLTKIGNQFVIDTTLQEELCMNARLTVGVNSLANICSIQKGGIDGLDPTTI 300

[Close]
BLAST of Bhi07G000278 vs. Swiss-Prot
Match: sp|O26778|RRP42_METTH (Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=rrp42 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.9e-35
Identity = 88/257 (34.24%), Postives = 135/257 (52.53%), Query Frame = 0 

Query: 21  RTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSIS 80
           R DGR    +R IS+ET VIS+A GS+RV++G T++I  VK ++G P P  P+ G +  +
Sbjct: 25  RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 84

Query: 81  VDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAAIDLSSLIVVEGKLCWDLYI 140
            +  P+A P FE    +E S ELS  +DRC+   +      IDL  L ++EG   W L++
Sbjct: 85  SELLPMASPTFEPGPPDERSVELSRVVDRCIRESR-----MIDLEKLCIIEGSKVWMLFL 144

Query: 141 EGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANEQPEVDVSDEEFLQFDTSGV 200
           +  +I  +GNL DA   A  AAL  T IP   V       E  EV ++ E+      +  
Sbjct: 145 DLHIIDYDGNLFDAAVLATVAALLDTRIPAAEV-------EDGEVVINREKMQPLPVNRK 204

Query: 201 PAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICGLTKRGGAGLDPSIILDMIS 260
             + T  K+G   ++D +LEEE  +++ +SI V   G IC + K G   L    +L  +S
Sbjct: 205 ALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVLKAVS 264

Query: 261 VGKHVSEELLDKLDSEI 278
           +      +L++ LD  +
Sbjct: 265 IAVEKVPQLIEYLDKSM 269

[Close]
BLAST of Bhi07G000278 vs. Swiss-Prot
Match: sp|Q8TYC2|RRP42_METKA (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.9e-34
Identity = 85/249 (34.14%), Postives = 137/249 (55.02%), Query Frame = 0 

Query: 21  RTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSIS 80
           R DGR    +RPI V   VIS+ANGSA VR+G T+++  VK E+GRP P  P++G ++++
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 81  VDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAAIDLSSLIVVEGKLCWDLYI 140
            +  P+A+P+FE    +E + ELS  +DR +          IDL  L + EG+ CW  ++
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGI-----RESEMIDLEELCIEEGEHCWVTFV 142

Query: 141 EGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANEQPEVDVSDEEFLQFDTSGV 200
           +  V+  +GNL DA      +ALS T +PK  V  +       EV+V +E+      +  
Sbjct: 143 DIHVLDHDGNLFDASMIGSVSALSITEVPKAEVVDD-------EVEVMEEDTEPLAINDF 202

Query: 201 PAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICGLTKRGGAGLDPSIILDMIS 260
           P  VT+ KVG++ ++D  LEEE  M + ++++V   G +C + K         ++ D I 
Sbjct: 203 PISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQKGELGDFPEHLLEDAID 259

Query: 261 VGKHVSEEL 270
           +    +EE+
Sbjct: 263 LATKKAEEV 259

[Close]
BLAST of Bhi07G000278 vs. TAIR10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein)

HSP 1 Score: 436.8 bits (1122), Expect = 1.0e-122
Identity = 219/285 (76.84%), Postives = 258/285 (90.53%), Query Frame = 0 

Query: 2   VGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61
           +GLS+GE+ FI+GGIAQDLRTDGR RLTYRPI VET VI QANGSARVR+GGT+VIA+VK
Sbjct: 1   MGLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVK 60

Query: 62  AELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAA 121
           AE+GRP+ +QPDKGKV++ +DCSP AEP F GRGGEELS+EL++AL RCLLGGKSG+GA 
Sbjct: 61  AEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAG 120

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANE 181
           I+LSSL++ EGK+CWDLYI+GLVISS+GNLLDALGAAIKAAL++T IPKV+V+AE + +E
Sbjct: 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDE 180

Query: 182 QPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICG 241
           QPE+D+SDEE+LQFDTS VP IVTLTKVG HYI+DAT EEESQMSSAVSISVNR GHICG
Sbjct: 181 QPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICG 240

Query: 242 LTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 287
           LTKR G+GLDPS+ILDMISV KHV+E L+ KLDSEI AA+A E+E
Sbjct: 241 LTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDE 285

[Close]
BLAST of Bhi07G000278 vs. TAIR10
Match: AT3G12990.1 (ribonuclease PH45A)

HSP 1 Score: 124.8 bits (312), Expect = 8.6e-29
Identity = 83/258 (32.17%), Postives = 136/258 (52.71%), Query Frame = 0 

Query: 4   LSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 63
           L++ E  F++  +  +LR DGRG   YR ++++     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 64  LGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAAID 123
           L +P   +P +G  SI  + SP+A+P+FE     E + EL   +DR L   +     A+D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESR-----AVD 130

Query: 124 LSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN--- 183
             SL V+ GKL W + I+  ++ + GNL+DA   A  AAL +   P   V  ++S +   
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII 190

Query: 184 EQPEVDVSDEEFLQFDTSGVPAIVT--LTKVGKHYIIDATLEEESQMSSAVSISVNRHGH 243
             PE    + E L      +P   T      G   ++D T  EE+ M   ++++VN +G 
Sbjct: 191 HPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 244 ICGLTKRGGAGLDPSIIL 257
           IC + K G  G++ S+IL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

[Close]
BLAST of Bhi07G000278 vs. TAIR10
Match: AT3G60500.1 (3'-5'-exoribonuclease family protein)

HSP 1 Score: 121.3 bits (303), Expect = 9.5e-28
Identity = 83/256 (32.42%), Postives = 137/256 (53.52%), Query Frame = 0 

Query: 4   LSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 63
           L++ E  F++  +  +LR DGRG   YR ++++     +  GS+ V++G T V+  V A+
Sbjct: 11  LTVNESKFVETALQSELRVDGRGLYDYRKLTIK---FGKEYGSSEVQLGQTHVMGFVTAQ 70

Query: 64  LGRPNPMQPDKGKVSISVDCSPIAEPAFE-GRGGEELSTELSVALDRCLLGGKSGSGAAI 123
           L +P   +P++G +SI  + SP+A+P+FE GR GE  + EL   +DR L   +     A+
Sbjct: 71  LVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDRGLRESR-----AV 130

Query: 124 DLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANEQ 183
           D  SL V+ GK+ W + I+  ++ + GNL+DA   A  AAL +   P   V  E +  E 
Sbjct: 131 DTESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGE-NGQEV 190

Query: 184 PEVDVSDEEFLQFDTSGVPAIVT--LTKVGKHYIIDATLEEESQMSSAVSISVNRHGHIC 243
               + + E L      +P   T      G   ++D T  EE+ M   ++++VN +G IC
Sbjct: 191 IIHPLEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDIC 250

Query: 244 GLTKRGGAGLDPSIIL 257
            + K G  G++ S+IL
Sbjct: 251 AIQKPGEEGVNQSVIL 256

[Close]
BLAST of Bhi07G000278 vs. TAIR10
Match: AT1G60080.1 (3'-5'-exoribonuclease family protein)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-19
Identity = 72/271 (26.57%), Postives = 124/271 (45.76%), Query Frame = 0 

Query: 11  FIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNPM 70
           F +  +++ LR DGR     R   V   ++S A+GSA  ++G T ++A ++ E+  P+  
Sbjct: 27  FFERHLSESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPSTD 86

Query: 71  QPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAAIDLSSLIVV 130
            PD+G ++I     PI  P        E +  +S  L   +L     S   IDL  L +V
Sbjct: 87  SPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVISKRLSDTIL-----SSGMIDLKELCLV 146

Query: 131 EGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKV------HVAAESSANEQPE 190
            GK  W  Y++   + ++G L DA   A  AA S+  IP V       + A +   +Q  
Sbjct: 147 SGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGEKDQDN 206

Query: 191 VDVSDEEFL-----QFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHI 250
             ++++E +     +     +P  +T      + + D T EEES M + V++ ++    +
Sbjct: 207 ALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILADPTTEEESIMDTLVTVVLDSSDQM 266

Query: 251 CGLTKRGGAGLD-PSIILDMISVGKHVSEEL 270
               K GGA L   S I   + + +  ++EL
Sbjct: 267 VSFYKSGGAALAYSSAIKSCVELARKRAKEL 292

[Close]
BLAST of Bhi07G000278 vs. TAIR10
Match: AT3G61620.1 (3'-5'-exoribonuclease family protein)

HSP 1 Score: 44.3 bits (103), Expect = 1.5e-04
Identity = 57/212 (26.89%), Postives = 93/212 (43.87%), Query Frame = 0 

Query: 18  QDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKV 77
           + LR DGR     R I  E  V+S+A+GSA   MG T+VIA V       N  Q  K   
Sbjct: 7   EGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDH 66

Query: 78  SISVDCSPIAEPAFEGRGGEEL---STELSVALDRCLLGGKSGSGAAIDLSSLIVVEGKL 137
           ++ +    +A+ +   R  ++    STELS+ + + +         A  L+ L+      
Sbjct: 67  AVVLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTM--------EACILTELMPHSQ-- 126

Query: 138 CWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANEQPEVDVSDEEFLQ 197
             D++++  V+ ++G    A   A   AL+  GIP   +A   SA       + D  +++
Sbjct: 127 -IDIFLQ--VLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVE 186

Query: 198 FDTSGVPAIV-TLTKVGKHYII--DATLEEES 224
               G    V  L K+ K  ++  DA L  E+
Sbjct: 187 DSAGGADVTVGILPKLDKVSLLQMDAKLPMET 205

[Close]
BLAST of Bhi07G000278 vs. TrEMBL
Match: tr|A0A0A0LU91|A0A0A0LU91_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 1.5e-144
Identity = 267/286 (93.36%), Postives = 279/286 (97.55%), Query Frame = 0 

Query: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEKLFIQ GIAQDLRTDGRGRLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGA 120
           KAELGRPNPMQPDKGKVSISVDCSP AEPAFEGRGGEELSTELS+AL+RCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120

Query: 121 AIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN 180
            IDLSSLIVVEGKLCWDLYIEGLV+SSEGNLLDALGAAIKAALS+TGIPKVHVAAE+  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYI+DATLEEESQMSSAVSIS++RHGHIC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240

Query: 241 GLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 287
           GLTKRGG G+DPSIILDMISVGKHVSEELL+KLDSEIVAA+ADEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]
BLAST of Bhi07G000278 vs. TrEMBL
Match: tr|A0A1S3B3T5|A0A1S3B3T5_CUCME (exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=4 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 3.7e-143
Identity = 265/286 (92.66%), Postives = 279/286 (97.55%), Query Frame = 0 

Query: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEKLFIQ GIAQDLRTDGRGRLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGA 120
           KAELGRPNPMQ +KGKVSISVDCSPIAEPAFEGRGGEELSTELSVAL+RCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGA 120

Query: 121 AIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN 180
            IDLSSLIVVEGKLCWDLYIEGLV+SSEGNLLDALGAAIKAALS+TGIPKVH+AAE+S N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHIC 240
           EQPEVDVSDEEF+QF+TSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSIS+NRHGHIC
Sbjct: 181 EQPEVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHIC 240

Query: 241 GLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 287
           GLTKRGG G+DPSIILDMISVGK+VSEELL+KLDSEIVAA+ DEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]
BLAST of Bhi07G000278 vs. TrEMBL
Match: tr|A0A059BFR0|A0A059BFR0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02573 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 1.3e-127
Identity = 234/286 (81.82%), Postives = 265/286 (92.66%), Query Frame = 0 

Query: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS+GEKLF+QGGIAQDLR+DGR RLTYRPI VET VI QANGSARVRMGGT+VIA+V
Sbjct: 1   MNGLSLGEKLFVQGGIAQDLRSDGRKRLTYRPIYVETGVIPQANGSARVRMGGTDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGA 120
           KAE+GRP+P+QP+KGKVSI VDCSP A P FEGRG EELSTELSVAL RCLLGGKSG+GA
Sbjct: 61  KAEIGRPSPLQPNKGKVSIYVDCSPTAAPVFEGRGAEELSTELSVALQRCLLGGKSGAGA 120

Query: 121 AIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN 180
            IDLSSLIVVEGK+CWDLYI+GLV+SS+GNLLDALGAAIKAALS+TGIP+VHVAAE+S  
Sbjct: 121 GIDLSSLIVVEGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVHVAAEASGE 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHIC 240
           +QPE+D+SDEEFLQFDTSGVP IVTLTKVG+HYI+DATL+EES+MSSA+S+S+NR G IC
Sbjct: 181 DQPELDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLDEESEMSSALSVSINRKGLIC 240

Query: 241 GLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 287
           GLTKRGGAGLDPS+ILDMISV KHVSE+L D+LDSEI AA+A EEE
Sbjct: 241 GLTKRGGAGLDPSVILDMISVAKHVSEQLTDRLDSEISAAEAVEEE 286

[Close]
BLAST of Bhi07G000278 vs. TrEMBL
Match: tr|A0A1U8AIV0|A0A1U8AIV0_NELNU (exosome complex component RRP42 OS=Nelumbo nucifera OX=4432 GN=LOC104600941 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 8.3e-127
Identity = 232/286 (81.12%), Postives = 262/286 (91.61%), Query Frame = 0 

Query: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLSIGEK FIQGGIAQD+RTDGR RLTYRPISVET VI QANGSARVRMG T+VIA+V
Sbjct: 1   MVGLSIGEKHFIQGGIAQDIRTDGRKRLTYRPISVETGVIPQANGSARVRMGATDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGA 120
           KAELG+P P+QPDKGKV+I VDCSP+A P FE RGGEEL+TELSVAL +CLLGGKSG+GA
Sbjct: 61  KAELGKPTPLQPDKGKVAIYVDCSPVAAPMFERRGGEELATELSVALQKCLLGGKSGAGA 120

Query: 121 AIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN 180
            IDLSSL+V+EGK+CWDLYI+ LVISS+GNLLD LGAAIKAALS+TG+PKVHVA   S +
Sbjct: 121 GIDLSSLMVIEGKICWDLYIDCLVISSDGNLLDTLGAAIKAALSNTGVPKVHVAMGPSGD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHIC 240
           EQPEVD+SDEEFLQFDT+GVP IVTLTK+G+HYI+DAT EEESQMSSAVSISVNRHGHIC
Sbjct: 181 EQPEVDISDEEFLQFDTTGVPVIVTLTKIGRHYIVDATSEEESQMSSAVSISVNRHGHIC 240

Query: 241 GLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 287
           GLTKRGG+GLDPS+ILDM+SV KHVSE+L++KLDSEI AA+A E E
Sbjct: 241 GLTKRGGSGLDPSVILDMVSVAKHVSEQLINKLDSEIAAAEAYEVE 286

[Close]
BLAST of Bhi07G000278 vs. TrEMBL
Match: tr|A0A151RLB1|A0A151RLB1_CAJCA (Exosome complex exonuclease RRP42 OS=Cajanus cajan OX=3821 GN=KK1_035204 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 8.3e-127
Identity = 233/285 (81.75%), Postives = 264/285 (92.63%), Query Frame = 0 

Query: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLS+GE+ FIQGGIAQDLR DGR RLTYRPISVET VI QANGSARVRMG T+VIA+V
Sbjct: 1   MVGLSVGEQHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQANGSARVRMGATDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGA 120
           K ELG+P+ +QPDKGKVSI +DCS  AEPAFEGRGG+EL+ ELS+AL RCLLGGKSG+GA
Sbjct: 61  KPELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDELAAELSIALQRCLLGGKSGAGA 120

Query: 121 AIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN 180
            IDLSSLIVVEGK+CWDLYI+GLV+SS+GNLLDALGAAIKAALS+TGIP+V VAA +S +
Sbjct: 121 GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGTSND 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHIC 240
           EQPEVD+SDEEFLQFDTSGVP IVTLTKVG+HYI+DAT EEESQMSSAVSISVNRHGHIC
Sbjct: 181 EQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRHGHIC 240

Query: 241 GLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEE 286
           G+TKRGGAGLDPSIILDMISV KHVSE++++KLDSEI +A+A+EE
Sbjct: 241 GITKRGGAGLDPSIILDMISVAKHVSEQVINKLDSEIASAEAEEE 285

[Close]
BLAST of Bhi07G000278 vs. NCBI nr
Match: XP_004151651.2 (PREDICTED: exosome complex component RRP42 [Cucumis sativus] >XP_011656293.1 PREDICTED: exosome complex component RRP42 [Cucumis sativus] >XP_011656329.1 PREDICTED: exosome complex component RRP42 [Cucumis sativus] >KGN63566.1 hypothetical protein Csa_1G004330 [Cucumis sativus])

HSP 1 Score: 521.2 bits (1341), Expect = 2.3e-144
Identity = 267/286 (93.36%), Postives = 279/286 (97.55%), Query Frame = 0 

Query: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEKLFIQ GIAQDLRTDGRGRLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGA 120
           KAELGRPNPMQPDKGKVSISVDCSP AEPAFEGRGGEELSTELS+AL+RCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120

Query: 121 AIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN 180
            IDLSSLIVVEGKLCWDLYIEGLV+SSEGNLLDALGAAIKAALS+TGIPKVHVAAE+  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYI+DATLEEESQMSSAVSIS++RHGHIC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240

Query: 241 GLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 287
           GLTKRGG G+DPSIILDMISVGKHVSEELL+KLDSEIVAA+ADEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]
BLAST of Bhi07G000278 vs. NCBI nr
Match: XP_008441268.1 (PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_008441269.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_008441270.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899428.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899429.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899430.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899431.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899432.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo])

HSP 1 Score: 516.5 bits (1329), Expect = 5.6e-143
Identity = 265/286 (92.66%), Postives = 279/286 (97.55%), Query Frame = 0 

Query: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEKLFIQ GIAQDLRTDGRGRLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGA 120
           KAELGRPNPMQ +KGKVSISVDCSPIAEPAFEGRGGEELSTELSVAL+RCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGA 120

Query: 121 AIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN 180
            IDLSSLIVVEGKLCWDLYIEGLV+SSEGNLLDALGAAIKAALS+TGIPKVH+AAE+S N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHIC 240
           EQPEVDVSDEEF+QF+TSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSIS+NRHGHIC
Sbjct: 181 EQPEVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHIC 240

Query: 241 GLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 287
           GLTKRGG G+DPSIILDMISVGK+VSEELL+KLDSEIVAA+ DEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]
BLAST of Bhi07G000278 vs. NCBI nr
Match: XP_023529361.1 (exosome complex component RRP42 [Cucurbita pepo subsp. pepo] >XP_023529362.1 exosome complex component RRP42 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 508.1 bits (1307), Expect = 2.0e-140
Identity = 258/286 (90.21%), Postives = 277/286 (96.85%), Query Frame = 0 

Query: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS+GEKLFIQGGIAQDLRTDGR RLTYRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGA 120
           KAELGRPN MQPDKGKVSI VDCSP AEP FEGRGGEEL+TELSVAL+RCLLGGKSG+GA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120

Query: 121 AIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN 180
            IDLSSLIVVEGKLCWDLYIEGLV+SS+GNLLDALGAAIKAALS+TGIPKV+V+AE+SAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVP IVTLTKVG+HYI+DATLEEESQMSSA+SISVNRHGH+C
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240

Query: 241 GLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 287
           GLTKRGGAG+DPS+ILDMISVGKHVSE+LL+KLDSEI AA+ADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]
BLAST of Bhi07G000278 vs. NCBI nr
Match: XP_022927940.1 (exosome complex component RRP42 [Cucurbita moschata] >XP_022927941.1 exosome complex component RRP42 [Cucurbita moschata])

HSP 1 Score: 506.5 bits (1303), Expect = 5.8e-140
Identity = 257/286 (89.86%), Postives = 276/286 (96.50%), Query Frame = 0 

Query: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS+GEKLFIQGGIAQDLRTDGR RLTYRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGA 120
           KAELGRPN MQPDKGKVSI VDCSP AEP FEGRGGEEL+TELSVAL+RCLLGGKSG+GA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120

Query: 121 AIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN 180
            IDLSSLIVVEGKLCWDLYIEGLV+SS+GNLLDALGAAIKAALS+TGIPKV+V+ E+SAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVP IVTLTKVG+HYI+DATLEEESQMSSA+SISVNRHGH+C
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240

Query: 241 GLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 287
           GLTKRGGAG+DPS+ILDMISVGKHVSE+LL+KLDSEI AA+ADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]
BLAST of Bhi07G000278 vs. NCBI nr
Match: XP_022135788.1 (exosome complex component RRP42 [Momordica charantia] >XP_022135789.1 exosome complex component RRP42 [Momordica charantia] >XP_022135790.1 exosome complex component RRP42 [Momordica charantia] >XP_022135791.1 exosome complex component RRP42 [Momordica charantia] >XP_022135792.1 exosome complex component RRP42 [Momordica charantia] >XP_022135793.1 exosome complex component RRP42 [Momordica charantia])

HSP 1 Score: 502.7 bits (1293), Expect = 8.4e-139
Identity = 255/286 (89.16%), Postives = 276/286 (96.50%), Query Frame = 0 

Query: 1   MVGLSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLSIGEK FIQGGIAQDLR+DGR RLTYRPISVETDVISQANGSARV+MGGTEVIA V
Sbjct: 1   MVGLSIGEKQFIQGGIAQDLRSDGRTRLTYRPISVETDVISQANGSARVKMGGTEVIAAV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGA 120
           KAELGRPN MQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVAL RCLLGGKSG+GA
Sbjct: 61  KAELGRPNAMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALQRCLLGGKSGAGA 120

Query: 121 AIDLSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSAN 180
            IDLSSLIVVEGK+CWDLYIEGLV+SS GNLLD LGAAIKAALS+TGIPKV+VAAE+SA+
Sbjct: 121 GIDLSSLIVVEGKICWDLYIEGLVVSSNGNLLDTLGAAIKAALSNTGIPKVNVAAEASAD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHIC 240
           +QPEVD+SDEEFLQFDTSGVP IVTLTKVG+HYI+DATLEEESQM+SA+SIS+NRHGHIC
Sbjct: 181 DQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMNSAISISINRHGHIC 240

Query: 241 GLTKRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 287
           G+TKRGGAG+DPSIILDMISVGKHVSE+LL+KLDSEI AA+ADEEE
Sbjct: 241 GVTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

The following BLAST results are available for this feature:
BLAST of Bhi07G000278 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q15024|EXOS7_HUMAN3.4e-5139.86Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3[more]
sp|Q9D0M0|EXOS7_MOUSE5.0e-5040.15Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2[more]
sp|Q54VM4|EXOS7_DICDI1.1e-4135.09Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 ... [more]
sp|O26778|RRP42_METTH5.9e-3534.24Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strai... [more]
sp|Q8TYC2|RRP42_METKA2.9e-3434.14Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324... [more]
BLAST of Bhi07G000278 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07750.11.0e-12276.843'-5'-exoribonuclease family protein[more]
AT3G12990.18.6e-2932.17ribonuclease PH45A[more]
AT3G60500.19.5e-2832.423'-5'-exoribonuclease family protein[more]
AT1G60080.11.6e-1926.573'-5'-exoribonuclease family protein[more]
AT3G61620.11.5e-0426.893'-5'-exoribonuclease family protein[more]
BLAST of Bhi07G000278 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LU91|A0A0A0LU91_CUCSA1.5e-14493.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1[more]
tr|A0A1S3B3T5|A0A1S3B3T5_CUCME3.7e-14392.66exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=... [more]
tr|A0A059BFR0|A0A059BFR0_EUCGR1.3e-12781.82Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02573 PE=4 SV... [more]
tr|A0A1U8AIV0|A0A1U8AIV0_NELNU8.3e-12781.12exosome complex component RRP42 OS=Nelumbo nucifera OX=4432 GN=LOC104600941 PE=4... [more]
tr|A0A151RLB1|A0A151RLB1_CAJCA8.3e-12781.75Exosome complex exonuclease RRP42 OS=Cajanus cajan OX=3821 GN=KK1_035204 PE=4 SV... [more]
BLAST of Bhi07G000278 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004151651.22.3e-14493.36PREDICTED: exosome complex component RRP42 [Cucumis sativus] >XP_011656293.1 PRE... [more]
XP_008441268.15.6e-14392.66PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_008441269.1 P... [more]
XP_023529361.12.0e-14090.21exosome complex component RRP42 [Cucurbita pepo subsp. pepo] >XP_023529362.1 exo... [more]
XP_022927940.15.8e-14089.86exosome complex component RRP42 [Cucurbita moschata] >XP_022927941.1 exosome com... [more]
XP_022135788.18.4e-13989.16exosome complex component RRP42 [Momordica charantia] >XP_022135789.1 exosome co... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR036345ExoRNase_PH_dom2_sf
IPR015847ExoRNase_PH_dom2
IPR027408PNPase/RNase_PH_dom_sf
IPR001247ExoRNase_PH_dom1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
biological_process GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0071028 nuclear mRNA surveillance
biological_process GO:0071042 nuclear polyadenylation-dependent mRNA catabolic process
biological_process GO:0071035 nuclear polyadenylation-dependent rRNA catabolic process
biological_process GO:0071038 nuclear polyadenylation-dependent tRNA catabolic process
biological_process GO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process GO:0034473 U1 snRNA 3'-end processing
biological_process GO:0034475 U4 snRNA 3'-end processing
biological_process GO:0034476 U5 snRNA 3'-end processing
cellular_component GO:0000177 cytoplasmic exosome (RNase complex)
cellular_component GO:0000176 nuclear exosome (RNase complex)
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi07M000278Bhi07M000278mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 30..169
e-value: 2.9E-28
score: 98.9
IPR027408PNPase/RNase PH domain superfamilyGENE3DG3DSA:3.30.230.70coord: 3..286
e-value: 1.7E-82
score: 279.1
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 200..263
e-value: 3.9E-10
score: 39.5
NoneNo IPR availablePANTHERPTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINcoord: 1..280
NoneNo IPR availablePANTHERPTHR11097:SF8EXOSOME COMPLEX COMPONENT RRP42coord: 1..280
NoneNo IPR availableCDDcd11367RNase_PH_RRP42coord: 4..277
e-value: 5.10402E-121
score: 349.587
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILYSSF55666Ribonuclease PH domain 2-likecoord: 196..279
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILYSSF54211Ribosomal protein S5 domain 2-likecoord: 4..174
coord: 209..223

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi07G000278Cucumber (Gy14) v2cgybwgoB490
Bhi07G000278Cucurbita maxima (Rimu)cmawgoB0889
Bhi07G000278Cucurbita maxima (Rimu)cmawgoB0890
Bhi07G000278Cucurbita moschata (Rifu)cmowgoB0888
Bhi07G000278Cucurbita moschata (Rifu)cmowgoB0889
Bhi07G000278Cucurbita pepo (Zucchini)cpewgoB0553
Bhi07G000278Cucurbita pepo (Zucchini)cpewgoB0554
Bhi07G000278Wild cucumber (PI 183967)cpiwgoB417
Bhi07G000278Cucumber (Chinese Long) v3cucwgoB527
Bhi07G000278Cucumber (Chinese Long) v2cuwgoB355
Bhi07G000278Bottle gourd (USVL1VR-Ls)lsiwgoB389
Bhi07G000278Melon (DHL92) v3.6.1medwgoB086
Bhi07G000278Melon (DHL92) v3.5.1mewgoB085
Bhi07G000278Watermelon (Charleston Gray)wcgwgoB596
Bhi07G000278Watermelon (97103) v2wgowmbB538
Bhi07G000278Silver-seed gourdcarwgoB0228
Bhi07G000278Silver-seed gourdcarwgoB0785