Bhi07G000260 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi07G000260
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Retrotransposon-related protein
Location	chr7 : 14032901 .. 14033176 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGACTTGCTTAATCCAGCTATGTTTAGCAGCCAAATTGATCAAGACCAGGAACTACAAAGCATCCGAGAGAACATCCAAACAGGGCAACCTCATCTGCAAGGGTACACGGTCAAAGGAGAACTCTTGTTGTACAAGCAGCAGATCGTGCTACCACCTTCATCCCCAACAATCCCATTGCTACTCCAAGAGTTCCACAGCAGACTGATCGGAGGTCATAATGGAGTAGTCAGATGTACCAACAACTCAAGAAGGAGTTTTGGAATGGAATGA

mRNA sequence

ATGGTAGACTTGCTTAATCCAGCTATGTTTAGCAGCCAAATTGATCAAGACCAGGAACTACAAAGCATCCGAGAGAACATCCAAACAGGGCAACCTCATCTGCAAGGGTACACGGTCAAAGGAGAACTCTTGTTGTACAAGCAGCAGATCGTGCTACCACCTTCATCCCCAACAATCCCATTGCTACTCCAAGAGTTCCACAGCAGACTGATCGGAGGTCATAATGGAGTAGTCAGATGTACCAACAACTCAAGAAGGAGTTTTGGAATGGAATGA

Coding sequence (CDS)

ATGGTAGACTTGCTTAATCCAGCTATGTTTAGCAGCCAAATTGATCAAGACCAGGAACTACAAAGCATCCGAGAGAACATCCAAACAGGGCAACCTCATCTGCAAGGGTACACGGTCAAAGGAGAACTCTTGTTGTACAAGCAGCAGATCGTGCTACCACCTTCATCCCCAACAATCCCATTGCTACTCCAAGAGTTCCACAGCAGACTGATCGGAGGTCATAATGGAGTAGTCAGATGTACCAACAACTCAAGAAGGAGTTTTGGAATGGAATGA

Protein sequence

MVDLLNPAMFSSQIDQDQELQSIRENIQTGQPHLQGYTVKGELLLYKQQIVLPPSSPTIPLLLQEFHSRLIGGHNGVVRCTNNSRRSFGME

Homology

[Close]

BLAST of Bhi07G000260 vs. TrEMBL
Match: tr|A0A2K3NXR6|A0A2K3NXR6_TRIPR (Pentatricopeptide repeat-containing protein at2g02980-like protein OS=Trifolium pratense OX=57577 GN=L195_g004333 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.0e-09
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 13  QIDQDQELQSIRENIQTGQPHLQGYTVKGELLLYKQQIVLPPSSPTIPLLLQEFHSRLIG 72
           ++ QD ELQ I E ++       G+TV  ++L YK ++VL P+SPTIPLLL+EFH   +G
Sbjct: 525 EVRQDSELQKIVEELKVNPESKVGFTVNQDILFYKGRLVLSPNSPTIPLLLKEFHETPMG 584

Query: 73  GHNGVVR 80
           GH+G +R
Sbjct: 585 GHSGFLR 591

[Close]

BLAST of Bhi07G000260 vs. TrEMBL
Match: tr|A0A2I0X132|A0A2I0X132_9ASPA (Putative mitochondrial protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca013044 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.5e-08
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 18   QELQSIRENIQTGQPHLQGYTVKGELLLYKQQIVLPPSSPTIPLLLQEFHSRLIGGHNG 77
            +EL S+RE I+ G+    GYTV+ +LLL++ ++VLP +S  IPL+LQEFH+  IGGH+G
Sbjct: 1159 EELGSLREAIRKGKEIPSGYTVEDQLLLHRGRLVLPKTSSQIPLILQEFHASAIGGHSG 1217

[Close]

BLAST of Bhi07G000260 vs. TrEMBL
Match: tr|A0A2I0VA20|A0A2I0VA20_9ASPA (Putative mitochondrial protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca024112 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.2e-08
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 18  QELQSIRENIQTGQPHLQGYTVKGELLLYKQQIVLPPSSPTIPLLLQEFHSRLIGGHNG 77
           +EL S RE I+ G+    GYTV+ +LLL+K ++VLP +S  IPL+LQEFH+  IGGH+G
Sbjct: 764 EELGSFREAIRKGEEIPAGYTVEDQLLLHKGRLVLPRTSSHIPLILQEFHASAIGGHSG 822

[Close]

BLAST of Bhi07G000260 vs. TrEMBL
Match: tr|A0A2I0WGN9|A0A2I0WGN9_9ASPA (Putative mitochondrial protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca005017 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.2e-08
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 18  QELQSIRENIQTGQPHLQGYTVKGELLLYKQQIVLPPSSPTIPLLLQEFHSRLIGGHNG 77
           +EL S RE I+ G+    GYTV+ +LLL+K ++VLP +S  IPL+LQEFH+  IGGH+G
Sbjct: 764 EELGSFREAIRKGEEIPAGYTVEDQLLLHKGRLVLPRTSSHIPLILQEFHASAIGGHSG 822

[Close]

BLAST of Bhi07G000260 vs. TrEMBL
Match: tr|W9RY14|W9RY14_9ROSA (Transposon Ty3-I Gag-Pol polyprotein OS=Morus notabilis OX=981085 GN=L484_000678 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 13  QIDQDQELQSIRENIQTGQPHLQGYTVKGELLLYKQQIVLPPSSPTIPLLLQEFHSRLIG 72
           Q+  D EL    E +  G     G+T++   LLYK ++V+PP SP IP+LL+EFHS  IG
Sbjct: 154 QVKVDLELNKTIEGLLAGTHSSMGFTLQRGHLLYKGRLVVPPKSPLIPILLREFHSSKIG 213

Query: 73  GHNGVVR 80
           GH+GV++
Sbjct: 214 GHSGVLK 220

[Close]

BLAST of Bhi07G000260 vs. NCBI nr
Match: PNY07827.1 (pentatricopeptide repeat-containing protein at2g02980-like protein [Trifolium pratense])

HSP 1 Score: 69.3 bits (168), Expect = 7.6e-09
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 13  QIDQDQELQSIRENIQTGQPHLQGYTVKGELLLYKQQIVLPPSSPTIPLLLQEFHSRLIG 72
           ++ QD ELQ I E ++       G+TV  ++L YK ++VL P+SPTIPLLL+EFH   +G
Sbjct: 525 EVRQDSELQKIVEELKVNPESKVGFTVNQDILFYKGRLVLSPNSPTIPLLLKEFHETPMG 584

Query: 73  GHNGVVR 80
           GH+G +R
Sbjct: 585 GHSGFLR 591

[Close]

BLAST of Bhi07G000260 vs. NCBI nr
Match: PKU81613.1 (putative mitochondrial protein [Dendrobium catenatum])

HSP 1 Score: 65.9 bits (159), Expect = 8.3e-08
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 18   QELQSIRENIQTGQPHLQGYTVKGELLLYKQQIVLPPSSPTIPLLLQEFHSRLIGGHNG 77
            +EL S+RE I+ G+    GYTV+ +LLL++ ++VLP +S  IPL+LQEFH+  IGGH+G
Sbjct: 1159 EELGSLREAIRKGKEIPSGYTVEDQLLLHRGRLVLPKTSSQIPLILQEFHASAIGGHSG 1217

[Close]

BLAST of Bhi07G000260 vs. NCBI nr
Match: XP_020698626.1 (uncharacterized protein LOC110111203, partial [Dendrobium catenatum])

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 18   QELQSIRENIQTGQPHLQGYTVKGELLLYKQQIVLPPSSPTIPLLLQEFHSRLIGGHNG 77
            +EL S RE I+ G+    GYTV+ +LLL+K ++VLP +S  IPL+LQEFH+  IGGH+G
Sbjct: 1159 EELGSFREAIRKGEEIPAGYTVEDQLLLHKGRLVLPRTSSHIPLILQEFHASAIGGHSG 1217

[Close]

BLAST of Bhi07G000260 vs. NCBI nr
Match: PKU60250.1 (putative mitochondrial protein [Dendrobium catenatum])

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 18  QELQSIRENIQTGQPHLQGYTVKGELLLYKQQIVLPPSSPTIPLLLQEFHSRLIGGHNG 77
           +EL S RE I+ G+    GYTV+ +LLL+K ++VLP +S  IPL+LQEFH+  IGGH+G
Sbjct: 764 EELGSFREAIRKGEEIPAGYTVEDQLLLHKGRLVLPRTSSHIPLILQEFHASAIGGHSG 822

[Close]

BLAST of Bhi07G000260 vs. NCBI nr
Match: PKU74826.1 (putative mitochondrial protein [Dendrobium catenatum])

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 18  QELQSIRENIQTGQPHLQGYTVKGELLLYKQQIVLPPSSPTIPLLLQEFHSRLIGGHNG 77
           +EL S RE I+ G+    GYTV+ +LLL+K ++VLP +S  IPL+LQEFH+  IGGH+G
Sbjct: 764 EELGSFREAIRKGEEIPAGYTVEDQLLLHKGRLVLPRTSSHIPLILQEFHASAIGGHSG 822

The following BLAST results are available for this feature:

BLAST of Bhi07G000260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi07G000260 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi07G000260 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2K3NXR6\|A0A2K3NXR6_TRIPR	5.0e-09	47.76	Pentatricopeptide repeat-containing protein at2g02980-like protein OS=Trifolium ...	[more]
tr\|A0A2I0X132\|A0A2I0X132_9ASPA	5.5e-08	52.54	Putative mitochondrial protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca0130...	[more]
tr\|A0A2I0VA20\|A0A2I0VA20_9ASPA	7.2e-08	54.24	Putative mitochondrial protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca0241...	[more]
tr\|A0A2I0WGN9\|A0A2I0WGN9_9ASPA	7.2e-08	54.24	Putative mitochondrial protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca0050...	[more]
tr\|W9RY14\|W9RY14_9ROSA	1.2e-07	46.27	Transposon Ty3-I Gag-Pol polyprotein OS=Morus notabilis OX=981085 GN=L484_000678...	[more]

BLAST of Bhi07G000260 vs. NCBI nr


Match Name	E-value	Identity	Description
PNY07827.1	7.6e-09	47.76	pentatricopeptide repeat-containing protein at2g02980-like protein [Trifolium pr...	[more]
PKU81613.1	8.3e-08	52.54	putative mitochondrial protein [Dendrobium catenatum]	[more]
XP_020698626.1	1.1e-07	54.24	uncharacterized protein LOC110111203, partial [Dendrobium catenatum]	[more]
PKU60250.1	1.1e-07	54.24	putative mitochondrial protein [Dendrobium catenatum]	[more]
PKU74826.1	1.1e-07	54.24	putative mitochondrial protein [Dendrobium catenatum]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi07M000260	Bhi07M000260	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi07G000260	Cucumber (Gy14) v2	cgybwgoB490
Bhi07G000260	Cucurbita maxima (Rimu)	cmawgoB0889
Bhi07G000260	Cucurbita maxima (Rimu)	cmawgoB0890
Bhi07G000260	Cucurbita moschata (Rifu)	cmowgoB0888
Bhi07G000260	Cucurbita moschata (Rifu)	cmowgoB0889
Bhi07G000260	Cucurbita pepo (Zucchini)	cpewgoB0553
Bhi07G000260	Cucurbita pepo (Zucchini)	cpewgoB0554
Bhi07G000260	Wild cucumber (PI 183967)	cpiwgoB417
Bhi07G000260	Cucumber (Chinese Long) v3	cucwgoB527
Bhi07G000260	Cucumber (Chinese Long) v2	cuwgoB355
Bhi07G000260	Bottle gourd (USVL1VR-Ls)	lsiwgoB389
Bhi07G000260	Melon (DHL92) v3.6.1	medwgoB086
Bhi07G000260	Melon (DHL92) v3.5.1	mewgoB085
Bhi07G000260	Watermelon (Charleston Gray)	wcgwgoB596
Bhi07G000260	Watermelon (97103) v2	wgowmbB538
Bhi07G000260	Watermelon (97103) v1	wgowmB546
Bhi07G000260	Watermelon (97103) v1	wgowmB547
Bhi07G000260	Silver-seed gourd	carwgoB0228
Bhi07G000260	Silver-seed gourd	carwgoB0785