Bhi07G000233 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi07G000233
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Villin-2
Location	chr7 : 12666400 .. 12666888 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGTTGTTAGCCTAAGCATACTGGAAAATAATAAGTGTTATCTCCTAGACTGTGATGCTGAAATATTTGTTTGGGTTGGAAGAGTGACGCAAGTAGAGGAGCGAAAAGCAACAATTCAAGTAGCTGAGGTAACCTTCCATGCCAAAATTTCAAGTAATTAAAATTTCTTTGGTCATGCTGAAGCTGGGAGAGTTTGTTATCCTTGTTTTTAATGAAAGTGCACATGAGCTCCTATATTAAAAAAATTATGTTGTGCTATATTGCTTCTTTGCTTTTGATCCTTTTCTTTGGTCATGCTAGTATCTACTTTCCTGTGATCCTGTCAAAGTTAATTAAATTATTATCATGTGGTGAAATGAAAATTATATTGCTTGTAAATTTACAGGAAGCAGGTGGATGGGGATGGTCAACCGTTGTTGCAGCAACAGCACCAATAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGA

mRNA sequence

ATGGACTGTGATGCTGAAATATTTGTTTGGGTTGGAAGAGTGACGCAAGTAGAGGAGCGAAAAGCAACAATTCAAGTAGCTGAGGAAGCAGGTGGATGGGGATGGTCAACCGTTGTTGCAGCAACAGCACCAATAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGA

Coding sequence (CDS)

ATGGACTGTGATGCTGAAATATTTGTTTGGGTTGGAAGAGTGACGCAAGTAGAGGAGCGAAAAGCAACAATTCAAGTAGCTGAGGAAGCAGGTGGATGGGGATGGTCAACCGTTGTTGCAGCAACAGCACCAATAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGA

Protein sequence

MDCDAEIFVWVGRVTQVEERKATIQVAEEAGGWGWSTVVAATAPIATDGSITRYLHAEQS

Homology

[Close]

BLAST of Bhi07G000233 vs. Swiss-Prot
Match: sp|O81645|VILI3_ARATH (Villin-3 OS=Arabidopsis thaliana OX=3702 GN=VLN3 PE=1 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 6.0e-06
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   MDCDAEIFVWVGRVTQVEERKATIQVAEE 30
           +DC +EIF+WVGRVTQVEERK  IQ AE+
Sbjct: 284 LDCGSEIFIWVGRVTQVEERKTAIQAAED 312

[Close]

BLAST of Bhi07G000233 vs. Swiss-Prot
Match: sp|O81644|VILI2_ARATH (Villin-2 OS=Arabidopsis thaliana OX=3702 GN=VLN2 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 1.7e-05
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   MDCDAEIFVWVGRVTQVEERKATIQVAEE 30
           +DC AEI++WVGRVTQV+ERKA  Q AEE
Sbjct: 282 LDCGAEIYIWVGRVTQVDERKAASQSAEE 310

[Close]

BLAST of Bhi07G000233 vs. Swiss-Prot
Match: sp|Q10L71|VLN2_ORYSJ (Villin-2 OS=Oryza sativa subsp. japonica OX=39947 GN=VLN2 PE=2 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 7.3e-04
Identity = 17/29 (58.62%), Postives = 23/29 (79.31%), Query Frame = 0


Query: 1   MDCDAEIFVWVGRVTQVEERKATIQVAEE 30
           +DC +++F+WVGR+TQVEERKA     EE
Sbjct: 285 VDCGSDLFIWVGRLTQVEERKAASAAVEE 313

[Close]

BLAST of Bhi07G000233 vs. TAIR10
Match: AT3G57410.1 (villin 3)

HSP 1 Score: 50.8 bits (120), Expect = 3.3e-07
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   MDCDAEIFVWVGRVTQVEERKATIQVAEE 30
           +DC +EIF+WVGRVTQVEERK  IQ AE+
Sbjct: 284 LDCGSEIFIWVGRVTQVEERKTAIQAAED 312

[Close]

BLAST of Bhi07G000233 vs. TAIR10
Match: AT2G41740.1 (villin 2)

HSP 1 Score: 49.3 bits (116), Expect = 9.7e-07
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   MDCDAEIFVWVGRVTQVEERKATIQVAEE 30
           +DC AEI++WVGRVTQV+ERKA  Q AEE
Sbjct: 282 LDCGAEIYIWVGRVTQVDERKAASQSAEE 310

[Close]

BLAST of Bhi07G000233 vs. TrEMBL
Match: tr|A0A1S3B6V5|A0A1S3B6V5_CUCME (villin-3 OS=Cucumis melo OX=3656 GN=LOC103486814 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-05
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   MDCDAEIFVWVGRVTQVEERKATIQVAEE 30
           +DC AEIFVWVGRVTQVEERKA IQVAEE
Sbjct: 284 LDCGAEIFVWVGRVTQVEERKAAIQVAEE 312

[Close]

BLAST of Bhi07G000233 vs. TrEMBL
Match: tr|A0A2P4MNA0|A0A2P4MNA0_QUESU (Villin-2 OS=Quercus suber OX=58331 GN=CFP56_26413 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.9e-05
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   MDCDAEIFVWVGRVTQVEERKATIQVAEE 30
           +DC AE+FVW+GRVTQVEERKA +QVAEE
Sbjct: 283 LDCGAEVFVWIGRVTQVEERKAAVQVAEE 311

[Close]

BLAST of Bhi07G000233 vs. TrEMBL
Match: tr|A0A2P4MNI6|A0A2P4MNI6_QUESU (Villin-2 OS=Quercus suber OX=58331 GN=CFP56_26413 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.9e-05
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   MDCDAEIFVWVGRVTQVEERKATIQVAEE 30
           +DC AE+FVW+GRVTQVEERKA +QVAEE
Sbjct: 283 LDCGAEVFVWIGRVTQVEERKAAVQVAEE 311

[Close]

BLAST of Bhi07G000233 vs. TrEMBL
Match: tr|A0A2I4EAC4|A0A2I4EAC4_9ROSI (villin-3-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108987796 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-04
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   MDCDAEIFVWVGRVTQVEERKATIQVAEE 30
           +DC  E+FVWVGRVTQVEERKA IQVAEE
Sbjct: 281 VDCGVEVFVWVGRVTQVEERKAAIQVAEE 309

[Close]

BLAST of Bhi07G000233 vs. TrEMBL
Match: tr|A0A2N9ERN2|A0A2N9ERN2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9368 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-04
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   MDCDAEIFVWVGRVTQVEERKATIQVAEE 30
           +DC AE+FVW+GRVTQVEERKA IQV EE
Sbjct: 313 LDCGAEVFVWIGRVTQVEERKAAIQVVEE 341

[Close]

BLAST of Bhi07G000233 vs. NCBI nr
Match: XP_008443130.1 (PREDICTED: villin-3 [Cucumis melo] >XP_008443131.1 PREDICTED: villin-3 [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 3.3e-05
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   MDCDAEIFVWVGRVTQVEERKATIQVAEE 30
           +DC AEIFVWVGRVTQVEERKA IQVAEE
Sbjct: 284 LDCGAEIFVWVGRVTQVEERKAAIQVAEE 312

[Close]

BLAST of Bhi07G000233 vs. NCBI nr
Match: XP_022154223.1 (villin-3-like [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-05
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   MDCDAEIFVWVGRVTQVEERKATIQVAEE 30
           +DC AE+FVWVGRVTQVEERKA IQVAEE
Sbjct: 284 LDCGAEVFVWVGRVTQVEERKAAIQVAEE 312

[Close]

BLAST of Bhi07G000233 vs. NCBI nr
Match: XP_022935019.1 (villin-3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-05
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   MDCDAEIFVWVGRVTQVEERKATIQVAEE 30
           +DC AE+FVWVGRVTQVEERKA IQVAEE
Sbjct: 284 LDCGAEVFVWVGRVTQVEERKAAIQVAEE 312

[Close]

BLAST of Bhi07G000233 vs. NCBI nr
Match: XP_022935011.1 (villin-3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-05
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   MDCDAEIFVWVGRVTQVEERKATIQVAEE 30
           +DC AE+FVWVGRVTQVEERKA IQVAEE
Sbjct: 284 LDCGAEVFVWVGRVTQVEERKAAIQVAEE 312

[Close]

BLAST of Bhi07G000233 vs. NCBI nr
Match: XP_022935422.1 (villin-3-like [Cucurbita moschata])

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-05
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   MDCDAEIFVWVGRVTQVEERKATIQVAEE 30
           +DC AE+FVWVGRVTQVEERKA IQVAEE
Sbjct: 284 LDCGAEVFVWVGRVTQVEERKAAIQVAEE 312

The following BLAST results are available for this feature:

BLAST of Bhi07G000233 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O81645\|VILI3_ARATH	6.0e-06	72.41	Villin-3 OS=Arabidopsis thaliana OX=3702 GN=VLN3 PE=1 SV=2	[more]
sp\|O81644\|VILI2_ARATH	1.7e-05	72.41	Villin-2 OS=Arabidopsis thaliana OX=3702 GN=VLN2 PE=1 SV=2	[more]
sp\|Q10L71\|VLN2_ORYSJ	7.3e-04	58.62	Villin-2 OS=Oryza sativa subsp. japonica OX=39947 GN=VLN2 PE=2 SV=1	[more]

BLAST of Bhi07G000233 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57410.1	3.3e-07	72.41	villin 3	[more]
AT2G41740.1	9.7e-07	72.41	villin 2	[more]

BLAST of Bhi07G000233 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B6V5\|A0A1S3B6V5_CUCME	2.2e-05	89.66	villin-3 OS=Cucumis melo OX=3656 GN=LOC103486814 PE=4 SV=1	[more]
tr\|A0A2P4MNA0\|A0A2P4MNA0_QUESU	4.9e-05	79.31	Villin-2 OS=Quercus suber OX=58331 GN=CFP56_26413 PE=4 SV=1	[more]
tr\|A0A2P4MNI6\|A0A2P4MNI6_QUESU	4.9e-05	79.31	Villin-2 OS=Quercus suber OX=58331 GN=CFP56_26413 PE=4 SV=1	[more]
tr\|A0A2I4EAC4\|A0A2I4EAC4_9ROSI	1.1e-04	82.76	villin-3-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108987796 PE=4 SV=1	[more]
tr\|A0A2N9ERN2\|A0A2N9ERN2_FAGSY	1.1e-04	79.31	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9368 PE=4 SV=1	[more]

BLAST of Bhi07G000233 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443130.1	3.3e-05	89.66	PREDICTED: villin-3 [Cucumis melo] >XP_008443131.1 PREDICTED: villin-3 [Cucumis ...	[more]
XP_022154223.1	4.4e-05	86.21	villin-3-like [Momordica charantia]	[more]
XP_022935019.1	4.4e-05	86.21	villin-3-like isoform X2 [Cucurbita moschata]	[more]
XP_022935011.1	4.4e-05	86.21	villin-3-like isoform X1 [Cucurbita moschata]	[more]
XP_022935422.1	4.4e-05	86.21	villin-3-like [Cucurbita moschata]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi07M000233	Bhi07M000233	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi07G000233	Cucumber (Gy14) v1	cgywgoB536
Bhi07G000233	Cucumber (Gy14) v2	cgybwgoB484
Bhi07G000233	Cucurbita maxima (Rimu)	cmawgoB0889
Bhi07G000233	Cucurbita maxima (Rimu)	cmawgoB0890
Bhi07G000233	Cucurbita moschata (Rifu)	cmowgoB0888
Bhi07G000233	Cucurbita moschata (Rifu)	cmowgoB0889
Bhi07G000233	Cucurbita pepo (Zucchini)	cpewgoB0553
Bhi07G000233	Cucurbita pepo (Zucchini)	cpewgoB0554
Bhi07G000233	Wild cucumber (PI 183967)	cpiwgoB512
Bhi07G000233	Cucumber (Chinese Long) v3	cucwgoB518
Bhi07G000233	Cucumber (Chinese Long) v2	cuwgoB507
Bhi07G000233	Bottle gourd (USVL1VR-Ls)	lsiwgoB389
Bhi07G000233	Melon (DHL92) v3.6.1	medwgoB086
Bhi07G000233	Melon (DHL92) v3.5.1	mewgoB085
Bhi07G000233	Watermelon (Charleston Gray)	wcgwgoB596
Bhi07G000233	Watermelon (97103) v2	wgowmbB538
Bhi07G000233	Watermelon (97103) v1	wgowmB546
Bhi07G000233	Silver-seed gourd	carwgoB0228
Bhi07G000233	Silver-seed gourd	carwgoB0785