Bhi07G000040 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi07G000040
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Short-chain dehydrogenase/reductase
Location	chr7 : 2599272 .. 2599453 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGATCAATAGAAATGGGAAAATATGGGAGTTGGATGCACAAGAATTTGATAATGTGATTGATACAAACGTCAAAGGGATCGCCAATATAATGCGTCATTTCATTCCACTTATGATTTCTACCAACAAAGGGATTATCATCAATATGTCTTCACTTTCTGGGAGAGATGCACATGGACTG

mRNA sequence

GTTTGATCAATAGAAATGGGAAAATATGGGAGTTGGATGCACAAGAATTTGATAATGTGATTGATACAAACGTCAAAGGGATCGCCAATATAATGCGTCATTTCATTCCACTTATGATTTCTACCAACAAAGGGATTATCATCAATATGTCTTCACTTTCTGGGAGAGATGCACATGGACTG

Coding sequence (CDS)

GTTTGATCAATAGAAATGGGAAAATATGGGAGTTGGATGCACAAGAATTTGATAATGTGATTGATACAAACGTCAAAGGGATCGCCAATATAATGCGTCATTTCATTCCACTTATGATTTCTACCAACAAAGGGATTATCATCAATATGTCTTCACTTTCTGGGAGAGATGCACATGGACTG

Protein sequence

LINRNGKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISTNKGIIINMSSLSGRDAHGL

Homology

[Close]

BLAST of Bhi07G000040 vs. Swiss-Prot
Match: sp|Q9SY73|PTALR_ARATH (NADPH-dependent pterin aldehyde reductase OS=Arabidopsis thaliana OX=3702 GN=At1g10310 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.9e-16
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 2   INRNGKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISTNKGIIINMSSLSGRDAHGL 61
           IN+N KIWE+ A++FDNV+DTNVKG+AN++RHFIPLM+   +GII+NMSS  GR    L
Sbjct: 104 INKNSKIWEVSAEDFDNVMDTNVKGVANVLRHFIPLMLPRKQGIIVNMSSGWGRSGAAL 162

[Close]

BLAST of Bhi07G000040 vs. Swiss-Prot
Match: sp|Q5HGK2|FABG_STAAC (3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain COL) OX=93062 GN=fabG PE=3 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 5.1e-05
Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 2   INRNGKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISTNKGIIINMSSLSG 55
           I R+  +  +  QE+D+VIDTN+KG+ N ++   P M+    G IIN+SS+ G
Sbjct: 92  ITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVG 144

[Close]

BLAST of Bhi07G000040 vs. Swiss-Prot
Match: sp|P0A0H9|FABG_STAAM (3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=fabG PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 5.1e-05
Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 2   INRNGKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISTNKGIIINMSSLSG 55
           I R+  +  +  QE+D+VIDTN+KG+ N ++   P M+    G IIN+SS+ G
Sbjct: 92  ITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVG 144

[Close]

BLAST of Bhi07G000040 vs. Swiss-Prot
Match: sp|P99093|FABG_STAAN (3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain N315) OX=158879 GN=fabG PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 5.1e-05
Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 2   INRNGKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISTNKGIIINMSSLSG 55
           I R+  +  +  QE+D+VIDTN+KG+ N ++   P M+    G IIN+SS+ G
Sbjct: 92  ITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVG 144

[Close]

BLAST of Bhi07G000040 vs. Swiss-Prot
Match: sp|Q6GHK4|FABG_STAAR (3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=fabG PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 5.1e-05
Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 2   INRNGKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISTNKGIIINMSSLSG 55
           I R+  +  +  QE+D+VIDTN+KG+ N ++   P M+    G IIN+SS+ G
Sbjct: 92  ITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVG 144

[Close]

BLAST of Bhi07G000040 vs. TAIR10
Match: AT1G10310.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 84.3 bits (207), Expect = 2.7e-17
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 2   INRNGKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISTNKGIIINMSSLSGRDAHGL 61
           IN+N KIWE+ A++FDNV+DTNVKG+AN++RHFIPLM+   +GII+NMSS  GR    L
Sbjct: 104 INKNSKIWEVSAEDFDNVMDTNVKGVANVLRHFIPLMLPRKQGIIVNMSSGWGRSGAAL 162

[Close]

BLAST of Bhi07G000040 vs. TrEMBL
Match: tr|A0A1S3CMA0|A0A1S3CMA0_CUCME (NADPH-dependent pterin aldehyde reductase-like OS=Cucumis melo OX=3656 GN=LOC103502554 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-22
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1   LINRNGKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISTNKGIIINMSSLSGRDAHGL 60
           LINRNGK+WELDA EFDNVIDTNVKGIAN+MRHFIPLMIS+NKGIIINMSS++GRD+H L
Sbjct: 106 LINRNGKMWELDAHEFDNVIDTNVKGIANVMRHFIPLMISSNKGIIINMSSMAGRDSHEL 165

[Close]

BLAST of Bhi07G000040 vs. TrEMBL
Match: tr|A0A0A0KIM5|A0A0A0KIM5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G002550 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.9e-21
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1  LINRNGKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISTNKGIIINMSSLSGRDAHGL 60
          LINR+ KIWELDAQEFDNVIDTNVKGIANIMRHFIPLMIS+NKGIIINMSS++GRDA  L
Sbjct: 15 LINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIAGRDAREL 74

[Close]

BLAST of Bhi07G000040 vs. TrEMBL
Match: tr|A0A0A0KMF3|A0A0A0KMF3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G002570 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.3e-17
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1   LINRNGKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISTNKGIIINMSSLSGRDAH 59
           L +++ KIWELDA+EFDNVIDTNVKGIANI+RHFIPLMI  N GII+NMSS +GR AH
Sbjct: 112 LAHKSAKIWELDAEEFDNVIDTNVKGIANILRHFIPLMIQNNNGIIVNMSSGAGRSAH 169

[Close]

BLAST of Bhi07G000040 vs. TrEMBL
Match: tr|A0A1S3CMB1|A0A1S3CMB1_CUCME (NADPH-dependent pterin aldehyde reductase-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502552 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.6e-17
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1   LINRNGKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISTNKGIIINMSSLSGRDAH 59
           L +R+ KIWEL+A+EFDNVIDTNVKGIANI+RHF+PLMI  N GII+NMSS +GR AH
Sbjct: 84  LAHRSAKIWELEAEEFDNVIDTNVKGIANILRHFVPLMIQNNNGIIVNMSSGAGRSAH 141

[Close]

BLAST of Bhi07G000040 vs. TrEMBL
Match: tr|A0A1S3CNS1|A0A1S3CNS1_CUCME (NADPH-dependent pterin aldehyde reductase-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502552 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.6e-17
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1   LINRNGKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISTNKGIIINMSSLSGRDAH 59
           L +R+ KIWEL+A+EFDNVIDTNVKGIANI+RHF+PLMI  N GII+NMSS +GR AH
Sbjct: 88  LAHRSAKIWELEAEEFDNVIDTNVKGIANILRHFVPLMIQNNNGIIVNMSSGAGRSAH 145

[Close]

BLAST of Bhi07G000040 vs. NCBI nr
Match: XP_008464744.1 (PREDICTED: NADPH-dependent pterin aldehyde reductase-like [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 5.1e-22
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1   LINRNGKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISTNKGIIINMSSLSGRDAHGL 60
           LINRNGK+WELDA EFDNVIDTNVKGIAN+MRHFIPLMIS+NKGIIINMSS++GRD+H L
Sbjct: 106 LINRNGKMWELDAHEFDNVIDTNVKGIANVMRHFIPLMISSNKGIIINMSSMAGRDSHEL 165

[Close]

BLAST of Bhi07G000040 vs. NCBI nr
Match: XP_023513562.1 (NADPH-dependent pterin aldehyde reductase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-21
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  LINRNGKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISTNKGIIINMSSLSGRDAHGL 60
          LINRNGKIWE+DAQEFDNVIDTNVKGIANIMRHFIPLMIS  +GIIINMSS+SGR AH L
Sbjct: 37 LINRNGKIWEVDAQEFDNVIDTNVKGIANIMRHFIPLMISKKQGIIINMSSISGRTAHAL 96

[Close]

BLAST of Bhi07G000040 vs. NCBI nr
Match: XP_022929951.1 (NADPH-dependent pterin aldehyde reductase-like, partial [Cucurbita moschata])

HSP 1 Score: 110.2 bits (274), Expect = 2.5e-21
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1   LINRNGKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISTNKGIIINMSSLSGRDAHGL 60
           LINRNGKIWE+DAQEFDNVIDTNVKGIANIMRHF+PLMIS  +GIIINMSS+SGR AH L
Sbjct: 122 LINRNGKIWEVDAQEFDNVIDTNVKGIANIMRHFVPLMISKRQGIIINMSSISGRTAHAL 181

[Close]

BLAST of Bhi07G000040 vs. NCBI nr
Match: XP_022994447.1 (NADPH-dependent pterin aldehyde reductase-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 109.8 bits (273), Expect = 3.3e-21
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1   LINRNGKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISTNKGIIINMSSLSGRDAHGL 60
           LINRNGKIWE+DAQEFDNVIDTNVKGIAN+MRHFIPLMIS  +G+IINMSS+SGR AH L
Sbjct: 93  LINRNGKIWEVDAQEFDNVIDTNVKGIANVMRHFIPLMISKKQGVIINMSSISGRTAHAL 152

[Close]

BLAST of Bhi07G000040 vs. NCBI nr
Match: XP_022994455.1 (NADPH-dependent pterin aldehyde reductase-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 109.8 bits (273), Expect = 3.3e-21
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1   LINRNGKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISTNKGIIINMSSLSGRDAHGL 60
           LINRNGKIWE+DAQEFDNVIDTNVKGIAN+MRHFIPLMIS  +G+IINMSS+SGR AH L
Sbjct: 93  LINRNGKIWEVDAQEFDNVIDTNVKGIANVMRHFIPLMISKKQGVIINMSSISGRTAHAL 152

The following BLAST results are available for this feature:

BLAST of Bhi07G000040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SY73\|PTALR_ARATH	4.9e-16	62.71	NADPH-dependent pterin aldehyde reductase OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]
sp\|Q5HGK2\|FABG_STAAC	5.1e-05	41.51	3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain...	[more]
sp\|P0A0H9\|FABG_STAAM	5.1e-05	41.51	3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain...	[more]
sp\|P99093\|FABG_STAAN	5.1e-05	41.51	3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain...	[more]
sp\|Q6GHK4\|FABG_STAAR	5.1e-05	41.51	3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain...	[more]

BLAST of Bhi07G000040 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10310.1	2.7e-17	62.71	NAD(P)-binding Rossmann-fold superfamily protein	[more]

BLAST of Bhi07G000040 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CMA0\|A0A1S3CMA0_CUCME	3.4e-22	86.67	NADPH-dependent pterin aldehyde reductase-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A0A0KIM5\|A0A0A0KIM5_CUCSA	4.9e-21	88.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G002550 PE=4 SV=1	[more]
tr\|A0A0A0KMF3\|A0A0A0KMF3_CUCSA	3.3e-17	75.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G002570 PE=3 SV=1	[more]
tr\|A0A1S3CMB1\|A0A1S3CMB1_CUCME	5.6e-17	74.14	NADPH-dependent pterin aldehyde reductase-like isoform X2 OS=Cucumis melo OX=365...	[more]
tr\|A0A1S3CNS1\|A0A1S3CNS1_CUCME	5.6e-17	74.14	NADPH-dependent pterin aldehyde reductase-like isoform X1 OS=Cucumis melo OX=365...	[more]

BLAST of Bhi07G000040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464744.1	5.1e-22	86.67	PREDICTED: NADPH-dependent pterin aldehyde reductase-like [Cucumis melo]	[more]
XP_023513562.1	1.9e-21	88.33	NADPH-dependent pterin aldehyde reductase-like [Cucurbita pepo subsp. pepo]	[more]
XP_022929951.1	2.5e-21	86.67	NADPH-dependent pterin aldehyde reductase-like, partial [Cucurbita moschata]	[more]
XP_022994447.1	3.3e-21	85.00	NADPH-dependent pterin aldehyde reductase-like isoform X2 [Cucurbita maxima]	[more]
XP_022994455.1	3.3e-21	85.00	NADPH-dependent pterin aldehyde reductase-like isoform X3 [Cucurbita maxima]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036291	NAD(P)-bd_dom_sf
IPR002347	SDR_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006760	folic acid-containing compound metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005829	cytosol
molecular_function	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi07M000040	Bhi07M000040	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 3..56 e-value: 2.7E-11 score: 43.2
None	No IPR available	GENE3D	G3DSA:3.40.50.720		coord: 1..59 e-value: 3.9E-13 score: 51.2
None	No IPR available	PANTHER	PTHR45267	FAMILY NOT NAMED	coord: 2..57
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	SSF51735	NAD(P)-binding Rossmann-fold domains	coord: 3..55

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi07G000040	Cucurbita maxima (Rimu)	cmawgoB0913
Bhi07G000040	Cucumber (Gy14) v1	cgywgoB559
Bhi07G000040	Cucumber (Gy14) v2	cgybwgoB498
Bhi07G000040	Cucurbita maxima (Rimu)	cmawgoB0904
Bhi07G000040	Cucurbita moschata (Rifu)	cmowgoB0906
Bhi07G000040	Cucurbita moschata (Rifu)	cmowgoB0914
Bhi07G000040	Cucurbita pepo (Zucchini)	cpewgoB0559
Bhi07G000040	Bottle gourd (USVL1VR-Ls)	lsiwgoB133
Bhi07G000040	Bottle gourd (USVL1VR-Ls)	lsiwgoB134
Bhi07G000040	Melon (DHL92) v3.6.1	medwgoB079
Bhi07G000040	Melon (DHL92) v3.6.1	medwgoB088
Bhi07G000040	Melon (DHL92) v3.5.1	mewgoB079
Bhi07G000040	Melon (DHL92) v3.5.1	mewgoB088
Bhi07G000040	Watermelon (Charleston Gray)	wcgwgoB172
Bhi07G000040	Watermelon (Charleston Gray)	wcgwgoB176
Bhi07G000040	Watermelon (97103) v2	wgowmbB518
Bhi07G000040	Watermelon (97103) v2	wgowmbB524
Bhi07G000040	Watermelon (97103) v1	wgowmB565
Bhi07G000040	Watermelon (97103) v1	wgowmB567