Bhi06G001585 (gene) Wax gourd

Overview
NameBhi06G001585
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionClass V chitinase
Locationchr6 : 52265878 .. 52266169 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGAGAGCCTTCAAATCGCGATGCCTTTATCAAATCCTCAATTGATGTAGCTAGAGCATCTGGATTTATAGAGGAGAGTCAAGGAGGTGTTTGAAAATAAGGATGAAAGGTTTCTAATTGCTTACACTTATTATGACACAACTTGGATTGCATATGAAAGTGAATACACAATTGCAGATAAGATTTCATTGGCAAAGTCTGATAATGTGCTTGGTTACTTTGCTTTCAACATTGCAGCTGATGATGATGTTAACACTCTTGCTAATGCTGCCAAATCTAATTGGTGA

mRNA sequence

ATGGCTGGAGAGCCTTCAAATCGCGATGCCTTTATCAAATCCTCAATTGATGTAGCTAGAGCATCTGGATTTATAGAGGAGAGTCAAGGAGATAAGATTTCATTGGCAAAGTCTGATAATGTGCTTGGTTACTTTGCTTTCAACATTGCAGCTGATGATGATGTTAACACTCTTGCTAATGCTGCCAAATCTAATTGGTGA

Coding sequence (CDS)

ATGGCTGGAGAGCCTTCAAATCGCGATGCCTTTATCAAATCCTCAATTGATGTAGCTAGAGCATCTGGATTTATAGAGGAGAGTCAAGGAGATAAGATTTCATTGGCAAAGTCTGATAATGTGCTTGGTTACTTTGCTTTCAACATTGCAGCTGATGATGATGTTAACACTCTTGCTAATGCTGCCAAATCTAATTGGTGA

Protein sequence

MAGEPSNRDAFIKSSIDVARASGFIEESQGDKISLAKSDNVLGYFAFNIAADDDVNTLANAAKSNW
Homology
[Close]
BLAST of Bhi06G001585 vs. TrEMBL
Match: tr|Q8S2V9|Q8S2V9_MOMCH (Class V chitinase OS=Momordica charantia OX=3673 GN=Chi5 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-05
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 32  KISLAKSDNVLGYFAFNIAADDDVNTLANAAKSNW 67
           KI  AK + +LGYFA+NI+ DDDVNTLANAA+SNW
Sbjct: 310 KIKFAKQNQLLGYFAWNISGDDDVNTLANAAQSNW 344

[Close]
BLAST of Bhi06G001585 vs. NCBI nr
Match: XP_022999580.1 (chitotriosidase-1-like [Cucurbita maxima])

HSP 1 Score: 66.2 bits (160), Expect = 4.6e-08
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 26  EESQGDKISLAKSDNVLGYFAFNIAADDDVNTLANAAKSNW 67
           E +  DKI+LAK+D VLGYFAFNIAADD  NTLANAAKSNW
Sbjct: 318 EYTVADKIALAKADKVLGYFAFNIAADDASNTLANAAKSNW 358

[Close]
BLAST of Bhi06G001585 vs. NCBI nr
Match: XP_022999577.1 (chitotriosidase-1-like [Cucurbita maxima])

HSP 1 Score: 66.2 bits (160), Expect = 4.6e-08
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 26  EESQGDKISLAKSDNVLGYFAFNIAADDDVNTLANAAKSNW 67
           E +  DKI+LAK+D VLGYFAFNIAADD  NTLANAAKSNW
Sbjct: 318 EYTVADKIALAKADKVLGYFAFNIAADDASNTLANAAKSNW 358

[Close]
BLAST of Bhi06G001585 vs. NCBI nr
Match: XP_022946077.1 (acidic mammalian chitinase-like [Cucurbita moschata] >XP_022946671.1 acidic mammalian chitinase-like [Cucurbita moschata])

HSP 1 Score: 65.9 bits (159), Expect = 6.1e-08
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 26  EESQGDKISLAKSDNVLGYFAFNIAADDDVNTLANAAKSNW 67
           E +  DKI+LAK+D VLGYFAFNIAADD  NTLANAAKSNW
Sbjct: 318 EYTIADKIALAKTDKVLGYFAFNIAADDASNTLANAAKSNW 358

[Close]
BLAST of Bhi06G001585 vs. NCBI nr
Match: XP_022946669.1 (chitotriosidase-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 65.9 bits (159), Expect = 6.1e-08
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 26  EESQGDKISLAKSDNVLGYFAFNIAADDDVNTLANAAKSNW 67
           E +  DKI+LAK+D VLGYFAFNIAADD  NTLANAAKSNW
Sbjct: 318 EYTIADKIALAKADKVLGYFAFNIAADDASNTLANAAKSNW 358

[Close]
BLAST of Bhi06G001585 vs. NCBI nr
Match: XP_022946670.1 (acidic mammalian chitinase-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 65.9 bits (159), Expect = 6.1e-08
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 26  EESQGDKISLAKSDNVLGYFAFNIAADDDVNTLANAAKSNW 67
           E +  DKI+LAK+D VLGYFAFNIAADD  NTLANAAKSNW
Sbjct: 312 EYTIADKIALAKADKVLGYFAFNIAADDASNTLANAAKSNW 352

The following BLAST results are available for this feature:
BLAST of Bhi06G001585 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi06G001585 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi06G001585 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|Q8S2V9|Q8S2V9_MOMCH1.9e-0571.43Class V chitinase OS=Momordica charantia OX=3673 GN=Chi5 PE=2 SV=1[more]
BLAST of Bhi06G001585 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022999580.14.6e-0878.05chitotriosidase-1-like [Cucurbita maxima][more]
XP_022999577.14.6e-0878.05chitotriosidase-1-like [Cucurbita maxima][more]
XP_022946077.16.1e-0878.05acidic mammalian chitinase-like [Cucurbita moschata] >XP_022946671.1 acidic mamm... [more]
XP_022946669.16.1e-0878.05chitotriosidase-1-like isoform X1 [Cucurbita moschata][more]
XP_022946670.16.1e-0878.05acidic mammalian chitinase-like isoform X2 [Cucurbita moschata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0016998 cell wall macromolecule catabolic process
biological_process GO:0006032 chitin catabolic process
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009753 response to jasmonic acid
biological_process GO:0009651 response to salt stress
cellular_component GO:0005575 cellular_component
cellular_component GO:0005618 cell wall
molecular_function GO:0004568 chitinase activity
molecular_function GO:0008843 endochitinase activity
molecular_function GO:0035885 exochitinase activity
molecular_function GO:0008061 chitin binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M001585Bhi06M001585mRNA