Bhi06G001562 (gene) Wax gourd

Overview
NameBhi06G001562
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptiontranscription factor bHLH66-like
Locationchr6 : 51287634 .. 51287995 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTTGCTTCAACAGCAGTTACTCATGTCGAGAGGAATCACCACCGCTACCGCCACCGCCACCGCCGCCGATGATTCCGGTCTCCTTCCGTTGCCTGGTAACGACGTCGTTGAAATAGCAGGCTCTTCGTCTTTCAAATGCCCTAATCCGGTACTCAAAATCGAACTCTCAAATTAAATTGTTAATCGTTTCAATTCGAAGATTAGGTTACGAATTAGTACCGGTTTCGATTCAATTTGCGGAAAATTATATCGTAAATCCTGCAGATTGATCACGGTTCAGTCATTCCCTCTCTTTTCAACGAATTTCGCCGGATTTCTCAACACCTCCGGTTTCGTCTTAACCAGAATCAATCTCAG

mRNA sequence

ATGGCCTTGCTTCAACAGCAGTTACTCATGTCGAGAGGAATCACCACCGCTACCGCCACCGCCACCGCCGCCGATGATTCCGGTCTCCTTCCGTTGCCTGGTAACGACGTCGTTGAAATAGCAGGCTCTTCGTCTTTCAAATGCCCTAATCCGATTGATCACGGTTCAGTCATTCCCTCTCTTTTCAACGAATTTCGCCGGATTTCTCAACACCTCCGGTTTCGTCTTAACCAGAATCAATCTCAG

Coding sequence (CDS)

ATGGCCTTGCTTCAACAGCAGTTACTCATGTCGAGAGGAATCACCACCGCTACCGCCACCGCCACCGCCGCCGATGATTCCGGTCTCCTTCCGTTGCCTGGTAACGACGTCGTTGAAATAGCAGGCTCTTCGTCTTTCAAATGCCCTAATCCGATTGATCACGGTTCAGTCATTCCCTCTCTTTTCAACGAATTTCGCCGGATTTCTCAACACCTCCGGTTTCGTCTTAACCAGAATCAATCTCAG

Protein sequence

MALLQQQLLMSRGITTATATATAADDSGLLPLPGNDVVEIAGSSSFKCPNPIDHGSVIPSLFNEFRRISQHLRFRLNQNQSQ
Homology
[Close]
BLAST of Bhi06G001562 vs. TrEMBL
Match: tr|A0A0A0LFE4|A0A0A0LFE4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009480 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.9e-16
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 0 

Query: 1   MALLQQQLLMSRGITTATATATAADDSGLLPLPGNDVVEIAG--SSSFKCPNPIDHGSVI 60
           M+LLQQQLLMSRGI      A+A DD GLLP+PGN+VVE+ G  SSSFKCPNP DHGSV+
Sbjct: 94  MSLLQQQLLMSRGI----VPASAGDDCGLLPMPGNNVVEVDGSSSSSFKCPNPTDHGSVV 153

Query: 61  PSLFNEF 66
           PSLFNEF
Sbjct: 154 PSLFNEF 156

[Close]
BLAST of Bhi06G001562 vs. TrEMBL
Match: tr|A0A1S3C449|A0A1S3C449_CUCME (transcription factor bHLH66-like OS=Cucumis melo OX=3656 GN=LOC103496446 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.1e-13
Identity = 47/68 (69.12%), Postives = 52/68 (76.47%), Query Frame = 0 

Query: 1   MALLQQQLLMSRGITTATATATAADDSGLLPLPGNDVVEIAG--SSSFKCPNPIDHGS-V 60
           M+LLQQQLLMSRGI      A+  DDSGLL +P N VVE+ G  SSSFKCPNP DHGS V
Sbjct: 97  MSLLQQQLLMSRGID----PASTGDDSGLLQMPSNSVVEVDGSSSSSFKCPNPTDHGSVV 156

Query: 61  IPSLFNEF 66
           +PSLFNEF
Sbjct: 157 VPSLFNEF 160

[Close]
BLAST of Bhi06G001562 vs. NCBI nr
Match: XP_022946667.1 (transcription factor bHLH69-like [Cucurbita moschata])

HSP 1 Score: 93.6 bits (231), Expect = 3.4e-16
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 0 

Query: 1   MALLQQQLLMSRGITTATATATAADDSGLLPLPGNDVVEIAGSSSFKCPNPIDHGSVIPS 60
           MALLQQQLLMSRGI      AT +DDS LLP+  NDVV++ GSSSFKCPNPI+HGSVIPS
Sbjct: 98  MALLQQQLLMSRGI------ATVSDDSSLLPMLSNDVVDVEGSSSFKCPNPINHGSVIPS 156

Query: 61  LFNEF 66
           +FNEF
Sbjct: 158 IFNEF 156

[Close]
BLAST of Bhi06G001562 vs. NCBI nr
Match: XP_004139396.1 (PREDICTED: transcription factor bHLH66-like [Cucumis sativus] >KGN60760.1 hypothetical protein Csa_2G009480 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 4.4e-16
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 0 

Query: 1   MALLQQQLLMSRGITTATATATAADDSGLLPLPGNDVVEIAG--SSSFKCPNPIDHGSVI 60
           M+LLQQQLLMSRGI      A+A DD GLLP+PGN+VVE+ G  SSSFKCPNP DHGSV+
Sbjct: 94  MSLLQQQLLMSRGI----VPASAGDDCGLLPMPGNNVVEVDGSSSSSFKCPNPTDHGSVV 153

Query: 61  PSLFNEF 66
           PSLFNEF
Sbjct: 154 PSLFNEF 156

[Close]
BLAST of Bhi06G001562 vs. NCBI nr
Match: XP_023545593.1 (transcription factor bHLH66-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.2 bits (230), Expect = 4.4e-16
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 0 

Query: 1   MALLQQQLLMSRGITTATATATAADDSGLLPLPGNDVVEIAGSSSFKCPNPIDHGSVIPS 60
           MALLQQQLLMSRGI      AT +DDS LLP+  NDVV++ GSSSFKCPNPI+HGS+IPS
Sbjct: 98  MALLQQQLLMSRGI------ATVSDDSSLLPMLSNDVVDVEGSSSFKCPNPINHGSIIPS 156

Query: 61  LFNEF 66
           +FNEF
Sbjct: 158 IFNEF 156

[Close]
BLAST of Bhi06G001562 vs. NCBI nr
Match: XP_022999424.1 (transcription factor bHLH69-like [Cucurbita maxima])

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 0 

Query: 1   MALLQQQLLMSRGITTATATATAADDSGLLPLPGNDVVEIAGSSSFKCPNPIDHGSVIPS 60
           MALLQQQLLMSRGI      AT +D S LLP+  NDVVE+ GSSSFKCPNPI+HGSVIPS
Sbjct: 98  MALLQQQLLMSRGI------ATVSDVSSLLPMLSNDVVEVEGSSSFKCPNPINHGSVIPS 156

Query: 61  LFNEF 66
           +FNEF
Sbjct: 158 IFNEF 156

[Close]
BLAST of Bhi06G001562 vs. NCBI nr
Match: XP_008456521.1 (PREDICTED: transcription factor bHLH66-like [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 7.8e-13
Identity = 47/68 (69.12%), Postives = 52/68 (76.47%), Query Frame = 0 

Query: 1   MALLQQQLLMSRGITTATATATAADDSGLLPLPGNDVVEIAG--SSSFKCPNPIDHGS-V 60
           M+LLQQQLLMSRGI      A+  DDSGLL +P N VVE+ G  SSSFKCPNP DHGS V
Sbjct: 97  MSLLQQQLLMSRGID----PASTGDDSGLLQMPSNSVVEVDGSSSSSFKCPNPTDHGSVV 156

Query: 61  IPSLFNEF 66
           +PSLFNEF
Sbjct: 157 VPSLFNEF 160

The following BLAST results are available for this feature:
BLAST of Bhi06G001562 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi06G001562 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi06G001562 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LFE4|A0A0A0LFE4_CUCSA2.9e-1673.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009480 PE=4 SV=1[more]
tr|A0A1S3C449|A0A1S3C449_CUCME5.1e-1369.12transcription factor bHLH66-like OS=Cucumis melo OX=3656 GN=LOC103496446 PE=4 SV... [more]
BLAST of Bhi06G001562 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022946667.13.4e-1673.85transcription factor bHLH69-like [Cucurbita moschata][more]
XP_004139396.14.4e-1673.13PREDICTED: transcription factor bHLH66-like [Cucumis sativus] >KGN60760.1 hypoth... [more]
XP_023545593.14.4e-1672.31transcription factor bHLH66-like [Cucurbita pepo subsp. pepo][more]
XP_022999424.11.7e-1573.85transcription factor bHLH69-like [Cucurbita maxima][more]
XP_008456521.17.8e-1369.12PREDICTED: transcription factor bHLH66-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M001562Bhi06M001562mRNA