Bhi06G001244 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi06G001244
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Photosystem I chlorophyll a apoprotein A1
Location	chr6 : 42317107 .. 42317280 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTGACGACAAACTTAAAAAGCCACCTACGAATGCTTTACGCCAAATCATTTCAGTTAATACTTGCATCCTCTGTATTACCGCAGCTACTGGCACAGAGTTAGTTGATGCTTATTCCCCAGATACCGTCATTATTTCTTCTACGGGAAAAGAAGTTCACGACCTGTAG

mRNA sequence

ATGGGGTTTGACGACAAACTTAAAAAGCCACCTACGAATGCTTTACGCCAAATCATTTCAGTTAATACTTGCATCCTCTGTATTACCGCAGCTACTGGCACAGAGTTAGTTGATGCTTATTCCCCAGATACCGTCATTATTTCTTCTACGGGAAAAGAAGTTCACGACCTGTAG

Coding sequence (CDS)

ATGGGGTTTGACGACAAACTTAAAAAGCCACCTACGAATGCTTTACGCCAAATCATTTCAGTTAATACTTGCATCCTCTGTATTACCGCAGCTACTGGCACAGAGTTAGTTGATGCTTATTCCCCAGATACCGTCATTATTTCTTCTACGGGAAAAGAAGTTCACGACCTGTAG

Protein sequence

MGFDDKLKKPPTNALRQIISVNTCILCITAATGTELVDAYSPDTVIISSTGKEVHDL

Homology

[Close]

BLAST of Bhi06G001244 vs. TrEMBL
Match: tr|A0A2P5QFC6|A0A2P5QFC6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD29821 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.9e-16
Identity = 45/57 (78.95%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 1   MGFDDKLKKPPTNALRQIISVNTCILCITAATGTELVDAYSPDTVIISSTGKEVHDL 58
           +GFD  LKKPPT+ALR II  N CILCITAATGT+L DAYSPDTVI SS GKEVHDL
Sbjct: 88  LGFDGGLKKPPTDALRLIIPDNACILCITAATGTKLADAYSPDTVIASSPGKEVHDL 144

[Close]

BLAST of Bhi06G001244 vs. TrEMBL
Match: tr|A0A2P5Y1J4|A0A2P5Y1J4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11227 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-14
Identity = 43/57 (75.44%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 1   MGFDDKLKKPPTNALRQIISVNTCILCITAATGTELVDAYSPDTVIISSTGKEVHDL 58
           +G+   LKKPPTNALR II  N CILCITAA GTEL DAYSPDTVI S  GKEVHDL
Sbjct: 144 IGYIVSLKKPPTNALRPIIPDNACILCITAAAGTELADAYSPDTVIASFPGKEVHDL 200

[Close]

BLAST of Bhi06G001244 vs. TrEMBL
Match: tr|A0A2P5VX18|A0A2P5VX18_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37330 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-14
Identity = 43/56 (76.79%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 2   GFDDKLKKPPTNALRQIISVNTCILCITAATGTELVDAYSPDTVIISSTGKEVHDL 58
           G+   LKKPPT+ALR II  N CILCITAATGTEL DAYSPDTVI S  GKEVHDL
Sbjct: 186 GYIVSLKKPPTDALRPIIPDNACILCITAATGTELADAYSPDTVIASFPGKEVHDL 241

[Close]

BLAST of Bhi06G001244 vs. TrEMBL
Match: tr|M1BT56|M1BT56_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.5e-14
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 1  MGFDDKLKKPPTNALRQIISVNTCILCITAATGTELVDAYSPDTVIISSTGKEVHD 57
          +GFD  L+KPPT+ALR IIS NTCIL ITAA GTEL DAYS DTVI SS GKEVHD
Sbjct: 18 LGFDSGLEKPPTDALRPIISDNTCILYITAAAGTELADAYSSDTVIASSPGKEVHD 73

[Close]

BLAST of Bhi06G001244 vs. TrEMBL
Match: tr|A0A2P5PXZ6|A0A2P5PXZ6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD35945 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-13
Identity = 42/51 (82.35%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 7  LKKPPTNALRQIISVNTCILCITAATGTELVDAYSPDTVIISSTGKEVHDL 58
          LKKPPTNALR II  N CILCITAA GTEL DAYSPDTVI S  GKEVHDL
Sbjct: 8  LKKPPTNALRPIIPDNACILCITAAAGTELADAYSPDTVIASFPGKEVHDL 58

[Close]

BLAST of Bhi06G001244 vs. NCBI nr
Match: PPD73254.1 (hypothetical protein GOBAR_DD29821 [Gossypium barbadense])

HSP 1 Score: 91.7 bits (226), Expect = 8.9e-16
Identity = 45/57 (78.95%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 1   MGFDDKLKKPPTNALRQIISVNTCILCITAATGTELVDAYSPDTVIISSTGKEVHDL 58
           +GFD  LKKPPT+ALR II  N CILCITAATGT+L DAYSPDTVI SS GKEVHDL
Sbjct: 88  LGFDGGLKKPPTDALRLIIPDNACILCITAATGTKLADAYSPDTVIASSPGKEVHDL 144

[Close]

BLAST of Bhi06G001244 vs. NCBI nr
Match: PPS09416.1 (hypothetical protein GOBAR_AA11227 [Gossypium barbadense])

HSP 1 Score: 86.3 bits (212), Expect = 3.7e-14
Identity = 43/57 (75.44%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 1   MGFDDKLKKPPTNALRQIISVNTCILCITAATGTELVDAYSPDTVIISSTGKEVHDL 58
           +G+   LKKPPTNALR II  N CILCITAA GTEL DAYSPDTVI S  GKEVHDL
Sbjct: 144 IGYIVSLKKPPTNALRPIIPDNACILCITAAAGTELADAYSPDTVIASFPGKEVHDL 200

[Close]

BLAST of Bhi06G001244 vs. NCBI nr
Match: PPR83388.1 (hypothetical protein GOBAR_AA37330 [Gossypium barbadense])

HSP 1 Score: 85.9 bits (211), Expect = 4.9e-14
Identity = 43/56 (76.79%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 2   GFDDKLKKPPTNALRQIISVNTCILCITAATGTELVDAYSPDTVIISSTGKEVHDL 58
           G+   LKKPPT+ALR II  N CILCITAATGTEL DAYSPDTVI S  GKEVHDL
Sbjct: 186 GYIVSLKKPPTDALRPIIPDNACILCITAATGTELADAYSPDTVIASFPGKEVHDL 241

[Close]

BLAST of Bhi06G001244 vs. NCBI nr
Match: PPD67180.1 (hypothetical protein GOBAR_DD35945 [Gossypium barbadense])

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-13
Identity = 42/51 (82.35%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 7  LKKPPTNALRQIISVNTCILCITAATGTELVDAYSPDTVIISSTGKEVHDL 58
          LKKPPTNALR II  N CILCITAA GTEL DAYSPDTVI S  GKEVHDL
Sbjct: 8  LKKPPTNALRPIIPDNACILCITAAAGTELADAYSPDTVIASFPGKEVHDL 58

[Close]

BLAST of Bhi06G001244 vs. NCBI nr
Match: PPR92190.1 (hypothetical protein GOBAR_AA28481 [Gossypium barbadense])

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-13
Identity = 42/56 (75.00%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 1  MGFDDKLKKPPTNALRQIISVNTCILCITAATGTELVDAYSPDTVIISSTGKEVHD 57
          +G    LKKPPT+ALR II  N CILCITAA GTEL DAYSPDTVI SS GKEVHD
Sbjct: 30 LGLLSGLKKPPTDALRPIIPDNACILCITAAAGTELADAYSPDTVIASSPGKEVHD 85

The following BLAST results are available for this feature:

BLAST of Bhi06G001244 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi06G001244 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi06G001244 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5QFC6\|A0A2P5QFC6_GOSBA	5.9e-16	78.95	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD29821 PE=4 SV...	[more]
tr\|A0A2P5Y1J4\|A0A2P5Y1J4_GOSBA	2.5e-14	75.44	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11227 PE=4 SV...	[more]
tr\|A0A2P5VX18\|A0A2P5VX18_GOSBA	3.2e-14	76.79	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37330 PE=4 SV...	[more]
tr\|M1BT56\|M1BT56_SOLTU	5.5e-14	76.79	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]
tr\|A0A2P5PXZ6\|A0A2P5PXZ6_GOSBA	1.2e-13	82.35	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD35945 PE=4 SV...	[more]

BLAST of Bhi06G001244 vs. NCBI nr


Match Name	E-value	Identity	Description
PPD73254.1	8.9e-16	78.95	hypothetical protein GOBAR_DD29821 [Gossypium barbadense]	[more]
PPS09416.1	3.7e-14	75.44	hypothetical protein GOBAR_AA11227 [Gossypium barbadense]	[more]
PPR83388.1	4.9e-14	76.79	hypothetical protein GOBAR_AA37330 [Gossypium barbadense]	[more]
PPD67180.1	1.9e-13	82.35	hypothetical protein GOBAR_DD35945 [Gossypium barbadense]	[more]
PPR92190.1	1.9e-13	75.00	hypothetical protein GOBAR_AA28481 [Gossypium barbadense]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M001244	Bhi06M001244	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi06G001244	Cucumber (Gy14) v1	cgywgoB114
Bhi06G001244	Cucumber (Gy14) v1	cgywgoB116
Bhi06G001244	Cucumber (Gy14) v2	cgybwgoB129
Bhi06G001244	Cucurbita maxima (Rimu)	cmawgoB0188
Bhi06G001244	Cucurbita maxima (Rimu)	cmawgoB0918
Bhi06G001244	Cucurbita maxima (Rimu)	cmawgoB0934
Bhi06G001244	Cucurbita moschata (Rifu)	cmowgoB0186
Bhi06G001244	Cucurbita moschata (Rifu)	cmowgoB0920
Bhi06G001244	Cucurbita moschata (Rifu)	cmowgoB0935
Bhi06G001244	Cucurbita pepo (Zucchini)	cpewgoB0116
Bhi06G001244	Cucurbita pepo (Zucchini)	cpewgoB0132
Bhi06G001244	Cucurbita pepo (Zucchini)	cpewgoB1022
Bhi06G001244	Wild cucumber (PI 183967)	cpiwgoB134
Bhi06G001244	Cucumber (Chinese Long) v3	cucwgoB141
Bhi06G001244	Cucumber (Chinese Long) v2	cuwgoB133
Bhi06G001244	Bottle gourd (USVL1VR-Ls)	lsiwgoB105
Bhi06G001244	Melon (DHL92) v3.6.1	medwgoB456
Bhi06G001244	Melon (DHL92) v3.6.1	medwgoB467
Bhi06G001244	Melon (DHL92) v3.5.1	mewgoB453
Bhi06G001244	Melon (DHL92) v3.5.1	mewgoB465
Bhi06G001244	Watermelon (Charleston Gray)	wcgwgoB264
Bhi06G001244	Watermelon (97103) v2	wgowmbB131
Bhi06G001244	Watermelon (97103) v1	wgowmB137
Bhi06G001244	Silver-seed gourd	carwgoB0671
Bhi06G001244	Silver-seed gourd	carwgoB1055