Bhi06G001241 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi06G001241
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	tRNA-specific 2-thiouridylase
Location	chr6 : 42254677 .. 42255303 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCTTTGAATTTCAAGAGTAAAGACACTCCTAGTAGCTACTCCTAATTACACATTTAAATATACAACTCATACTATAGGGGAGCCTCACCCATAACCCTATAAATTTGTGCAAAAACTTAGAGATTCGCAACGGTTCATAAAGCCTACTCCTTTTCTTTTCAGCATAAGAAGTTAGAGAGGTGAGAGGTGAGAGGTTTAAATCCCTGATCTATAACAACGTCGAACAAATGGGTCTTATAGAGATTGTTGGCATTGGAAGACGTCGGTGGGATTACTATGAGAAGCTCGAGGGTAATAGGGTGGTTGCTAAGCGTAGACGTCGATGGATGAAGAAAATATTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGATTTACAAGGTTGAGGAGTTTTGGTTTGAAGGTATCATTTTTAATGTTGTTGTCTAGAAGAATTAGGGAGATTGTTAATAGAATGAAGGTTGTTGAAGATGTATGTCCTAATATCATCTTCTCCACTCAATGGGGACTTCCTGTTTTATCTTATATATAATTTTTCTTCAAATGTTTGTTGCTTTGACTCATGTTTTTATTAATGGATGGATTATTCATATAACTTTTATGGTTACATATATGTAATGTAG

mRNA sequence

CTTCCTTTGAATTTCAAGAGTAAAGACACTCCTAGTAGCTACTCCTAATTACACATTTAAATATACAACTCATACTATAGGGGAGCCTCACCCATAACCCTATAAATTTGTGCAAAAACTTAGAGATTCGCAACGGTTCATAAAGCCTACTCCTTTTCTTTTCAGCATAAGAAGTTAGAGAGGTGAGAGGTGAGAGGTTTAAATCCCTGATCTATAACAACGTCGAACAAATGGGTCTTATAGAGATTGTTGGCATTGGAAGACGTCGGTGGGATTACTATGAGAAGCTCGAGGGTAATAGGGTGGTTGCTAAGCGTAGACGTCGATGGATGAAGAAAATATTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGATTTACAAGGTTGAGGAGTTTTGGTTTGAAGGTATCATTTTTAATGTTGTTGTCTAGAAGAATTAGGGAGATTGTTAATAGAATGAAGGTTGTTGAAGATGTATGTCCTAATATCATCTTCTCCACTCAATGGGGACTTCCTGTTTTATCTTATATATAATTTTTCTTCAAATGTTTGTTGCTTTGACTCATGTTTTTATTAATGGATGGATTATTCATATAACTTTTATGGTTACATATATGTAATGTAG

Coding sequence (CDS)

ATGGGTCTTATAGAGATTGTTGGCATTGGAAGACGTCGGTGGGATTACTATGAGAAGCTCGAGGGTAATAGGGTGGTTGCTAAGCGTAGACGTCGATGGATGAAGAAAATATTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGATTTACAAGGTTGAGGAGTTTTGGTTTGAAGGTATCATTTTTAATGTTGTTGTCTAGAAGAATTAGGGAGATTGTTAATAGAATGAAGGTTGTTGAAGATGTATGTCCTAATATCATCTTCTCCACTCAATGGGGACTTCCTGTTTTATCTTATATATAA

Protein sequence

MGLIEIVGIGRRRWDYYEKLEGNRVVAKRRRRWMKKILKRGMKGFRLYRFTRLRSFGLKVSFLMLLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPVLSYI

Homology

[Close]

BLAST of Bhi06G001241 vs. TrEMBL
Match: tr|A0A0A0LJ29|A0A0A0LJ29_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035390 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.2e-35
Identity = 86/106 (81.13%), Postives = 93/106 (87.74%), Query Frame = 0


Query: 1   MGLIEIVGIGRRRWD-YYEKLE---GNRVVAKRRRRWMKKILKRGMKGFRLYRFTRLR-S 60
           M L+EI GIG RRW+ +YEKL     NRVV  RRRRW+KK+LKRGMKGFRLYRFTRL+ S
Sbjct: 1   MSLLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSS 60

Query: 61  FGLKVSFLMLLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPVLSYI 102
           FGLKVSFLM LSRRIREIV+RMKVVEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  FGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI 106

[Close]

BLAST of Bhi06G001241 vs. TrEMBL
Match: tr|A0A1U7YA37|A0A1U7YA37_NICSY (uncharacterized protein LOC104242730 OS=Nicotiana sylvestris OX=4096 GN=LOC104242730 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.2e-07
Identity = 41/91 (45.05%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 17  YEKL---EGNRVVAKRRRRWMKKILKRGMKGFRLYRFTRLRSFGLKVSFLMLLSRRI--- 76
           YE+L   E  +V  + RR W+ K +    KG +L   +R R    K   +++L RRI   
Sbjct: 11  YERLGGVEDLKVATRPRRCWLIKKMNGRFKGIKL---SRSRKLNWKAFSMVILPRRIARI 70

Query: 77  -REIVNRMKVVEDVCPNIIFSTQWGLPVLSY 101
            REIV RMK +EDVCP I+FS  WGLPVLS+
Sbjct: 71  YREIVKRMKNMEDVCPAIVFSCHWGLPVLSH 98

[Close]

BLAST of Bhi06G001241 vs. TrEMBL
Match: tr|A0A2C9VF51|A0A2C9VF51_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G106000 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.8e-07
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 1   MGLIEIVGIGRRRWDYYEKLEGNRVVAK-RRRRWMKKILKRGMKGFRLYRFTRLRSFGLK 60
           MG+ +I+G+ + R+ Y + +  +  +AK RRR W+KK L  G+KG RL R  +L    L 
Sbjct: 1   MGIQDIIGL-QLRYRYEKLISSDEKLAKSRRRSWVKK-LNGGLKGLRLSRSRKLTFKALS 60

Query: 61  VSFL-MLLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPVLSY 101
           V  L   ++R   +I++R+K +ED+ PNIIFSTQ GLPVLS+
Sbjct: 61  VMVLPSRIARVYADIISRIK-IEDLYPNIIFSTQLGLPVLSH 99

[Close]

BLAST of Bhi06G001241 vs. TrEMBL
Match: tr|A0A1J6KJT7|A0A1J6KJT7_NICAT (Uncharacterized protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A49_63798 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-06
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 12  RRWDYYEKLEGNRVVAKRRRRWMKKILKRGMKGFRLYRFTRLRSFGLKVSFLMLLSRRIR 71
           RR++    +E  +V  + R+ W+ K +    KG +L   +R R    K   +++L RRI 
Sbjct: 1   RRYERLGGVEDLKVATRPRKCWLIKKMNGRFKGIKL---SRSRKLNWKAFSMVILPRRIA 60

Query: 72  ----EIVNRMKVVEDVCPNIIFSTQWGLPVLSY 101
               EIV RMK +EDVCP I+FS  WGLPVLS+
Sbjct: 61  RIYGEIVKRMKNMEDVCPAIVFSCHWGLPVLSH 90

[Close]

BLAST of Bhi06G001241 vs. TrEMBL
Match: tr|A0A061F3B0|A0A061F3B0_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026865 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.4e-06
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 17  YEKLEGNRVVAKRRRRWMKKILKRGMKGFRLYRFTRLRSFGLKVSFLMLLSRRIREIVNR 76
           YEKL  N   A+ RRRW+KK +  G+KG RL R  +L++    V F   ++R   +I +R
Sbjct: 19  YEKLR-NVGDARPRRRWVKK-MSGGLKGLRLSRSRKLKTL-CSVVFANRITRIYADIAHR 78

Query: 77  MKVVEDVCPNIIFSTQWGLPVLSY 101
           +K+   +CPNIIF+T WGLP LS+
Sbjct: 79  LKMDGTLCPNIIFATHWGLPTLSH 99

[Close]

BLAST of Bhi06G001241 vs. NCBI nr
Match: KGN61039.1 (hypothetical protein Csa_2G035390 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 1.8e-35
Identity = 86/106 (81.13%), Postives = 93/106 (87.74%), Query Frame = 0


Query: 1   MGLIEIVGIGRRRWD-YYEKLE---GNRVVAKRRRRWMKKILKRGMKGFRLYRFTRLR-S 60
           M L+EI GIG RRW+ +YEKL     NRVV  RRRRW+KK+LKRGMKGFRLYRFTRL+ S
Sbjct: 1   MSLLEIAGIGGRRWECHYEKLNSGGSNRVVVMRRRRWVKKMLKRGMKGFRLYRFTRLKSS 60

Query: 61  FGLKVSFLMLLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPVLSYI 102
           FGLKVSFLM LSRRIREIV+RMKVVEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  FGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI 106

[Close]

BLAST of Bhi06G001241 vs. NCBI nr
Match: XP_015874776.1 (uncharacterized protein LOC107411665 [Ziziphus jujuba])

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 53/108 (49.07%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 1   MGLIEIVGIGRRRWDYYEKLEGN----RVVAKRRRRWMKKILKRGMKGFRLYRFTRLRSF 60
           MG  ++V  GR R+  YEKL  N    +V +  RR W+KK+  R +KG RL R  RL   
Sbjct: 1   MGFQQMVE-GRIRY-RYEKLSSNMNIEKVASPGRRHWVKKMNGR-LKGLRLSRSRRLT-- 60

Query: 61  GLKVSFLMLLSRRI----REIVNRMKVVEDVCPNIIFSTQWGLPVLSY 101
            LKV  +++LS RI     ++VNRMK +E  CP IIFSTQWGLPVLS+
Sbjct: 61  -LKVFSVVVLSSRIGRIYTKVVNRMK-IEGGCPAIIFSTQWGLPVLSH 101

[Close]

BLAST of Bhi06G001241 vs. NCBI nr
Match: XP_009796114.1 (PREDICTED: uncharacterized protein LOC104242730 [Nicotiana sylvestris] >XP_009796115.1 PREDICTED: uncharacterized protein LOC104242730 [Nicotiana sylvestris])

HSP 1 Score: 62.8 bits (151), Expect = 7.8e-07
Identity = 41/91 (45.05%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 17  YEKL---EGNRVVAKRRRRWMKKILKRGMKGFRLYRFTRLRSFGLKVSFLMLLSRRI--- 76
           YE+L   E  +V  + RR W+ K +    KG +L   +R R    K   +++L RRI   
Sbjct: 11  YERLGGVEDLKVATRPRRCWLIKKMNGRFKGIKL---SRSRKLNWKAFSMVILPRRIARI 70

Query: 77  -REIVNRMKVVEDVCPNIIFSTQWGLPVLSY 101
            REIV RMK +EDVCP I+FS  WGLPVLS+
Sbjct: 71  YREIVKRMKNMEDVCPAIVFSCHWGLPVLSH 98

[Close]

BLAST of Bhi06G001241 vs. NCBI nr
Match: OAY43889.1 (hypothetical protein MANES_08G106000 [Manihot esculenta])

HSP 1 Score: 62.4 bits (150), Expect = 1.0e-06
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 1   MGLIEIVGIGRRRWDYYEKLEGNRVVAK-RRRRWMKKILKRGMKGFRLYRFTRLRSFGLK 60
           MG+ +I+G+ + R+ Y + +  +  +AK RRR W+KK L  G+KG RL R  +L    L 
Sbjct: 1   MGIQDIIGL-QLRYRYEKLISSDEKLAKSRRRSWVKK-LNGGLKGLRLSRSRKLTFKALS 60

Query: 61  VSFL-MLLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPVLSY 101
           V  L   ++R   +I++R+K +ED+ PNIIFSTQ GLPVLS+
Sbjct: 61  VMVLPSRIARVYADIISRIK-IEDLYPNIIFSTQLGLPVLSH 99

[Close]

BLAST of Bhi06G001241 vs. NCBI nr
Match: OIT25144.1 (hypothetical protein A4A49_63798, partial [Nicotiana attenuata])

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 12  RRWDYYEKLEGNRVVAKRRRRWMKKILKRGMKGFRLYRFTRLRSFGLKVSFLMLLSRRIR 71
           RR++    +E  +V  + R+ W+ K +    KG +L   +R R    K   +++L RRI 
Sbjct: 1   RRYERLGGVEDLKVATRPRKCWLIKKMNGRFKGIKL---SRSRKLNWKAFSMVILPRRIA 60

Query: 72  ----EIVNRMKVVEDVCPNIIFSTQWGLPVLSY 101
               EIV RMK +EDVCP I+FS  WGLPVLS+
Sbjct: 61  RIYGEIVKRMKNMEDVCPAIVFSCHWGLPVLSH 90

The following BLAST results are available for this feature:

BLAST of Bhi06G001241 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi06G001241 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi06G001241 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJ29\|A0A0A0LJ29_CUCSA	1.2e-35	81.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035390 PE=4 SV=1	[more]
tr\|A0A1U7YA37\|A0A1U7YA37_NICSY	5.2e-07	45.05	uncharacterized protein LOC104242730 OS=Nicotiana sylvestris OX=4096 GN=LOC10424...	[more]
tr\|A0A2C9VF51\|A0A2C9VF51_MANES	6.8e-07	44.12	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G106000 PE=4 SV=...	[more]
tr\|A0A1J6KJT7\|A0A1J6KJT7_NICAT	2.6e-06	40.86	Uncharacterized protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A49_6379...	[more]
tr\|A0A061F3B0\|A0A061F3B0_THECC	3.4e-06	45.24	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026865 PE=4 SV=1	[more]

BLAST of Bhi06G001241 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61039.1	1.8e-35	81.13	hypothetical protein Csa_2G035390 [Cucumis sativus]	[more]
XP_015874776.1	2.7e-07	49.07	uncharacterized protein LOC107411665 [Ziziphus jujuba]	[more]
XP_009796114.1	7.8e-07	45.05	PREDICTED: uncharacterized protein LOC104242730 [Nicotiana sylvestris] >XP_00979...	[more]
OAY43889.1	1.0e-06	44.12	hypothetical protein MANES_08G106000 [Manihot esculenta]	[more]
OIT25144.1	3.9e-06	40.86	hypothetical protein A4A49_63798, partial [Nicotiana attenuata]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M001241	Bhi06M001241	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35123	FAMILY NOT NAMED	coord: 13..100
None	No IPR available	PANTHER	PTHR35123:SF1	SUBFAMILY NOT NAMED	coord: 13..100

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi06G001241	Csa2G035390	Cucumber (Chinese Long) v2	cuwgoB133
Bhi06G001241	CSPI02G05080	Wild cucumber (PI 183967)	cpiwgoB138
Bhi06G001241	CmaCh05G010470	Cucurbita maxima (Rimu)	cmawgoB0918
Bhi06G001241	Cp4.1LG11g08470	Cucurbita pepo (Zucchini)	cpewgoB0116
Bhi06G001241	CsaV3_2G007440	Cucumber (Chinese Long) v3	cucwgoB141
Bhi06G001241	Cla020003	Watermelon (97103) v1	wgowmB137

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi06G001241	Cucumber (Gy14) v1	cgywgoB114
Bhi06G001241	Cucumber (Gy14) v1	cgywgoB116
Bhi06G001241	Cucumber (Gy14) v2	cgybwgoB129
Bhi06G001241	Cucurbita maxima (Rimu)	cmawgoB0188
Bhi06G001241	Cucurbita maxima (Rimu)	cmawgoB0934
Bhi06G001241	Cucurbita moschata (Rifu)	cmowgoB0186
Bhi06G001241	Cucurbita moschata (Rifu)	cmowgoB0920
Bhi06G001241	Cucurbita moschata (Rifu)	cmowgoB0935
Bhi06G001241	Cucurbita pepo (Zucchini)	cpewgoB0132
Bhi06G001241	Cucurbita pepo (Zucchini)	cpewgoB1022
Bhi06G001241	Wild cucumber (PI 183967)	cpiwgoB134
Bhi06G001241	Bottle gourd (USVL1VR-Ls)	lsiwgoB105
Bhi06G001241	Melon (DHL92) v3.6.1	medwgoB456
Bhi06G001241	Melon (DHL92) v3.6.1	medwgoB467
Bhi06G001241	Melon (DHL92) v3.5.1	mewgoB453
Bhi06G001241	Melon (DHL92) v3.5.1	mewgoB465
Bhi06G001241	Watermelon (Charleston Gray)	wcgwgoB264
Bhi06G001241	Watermelon (97103) v2	wgowmbB131
Bhi06G001241	Silver-seed gourd	carwgoB0671
Bhi06G001241	Silver-seed gourd	carwgoB1055