Bhi06G001090 (gene) Wax gourd

Overview
NameBhi06G001090
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionEukaryotic translation initiation factor 3 subunit B
Locationchr6 : 36361585 .. 36363354 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGACGTGATGCTGATGAAGGAAATTGAGGAAATGGCTGGTCGTCTTGGGATAGATCTCTCCCAAGTTGATTTTGACGCTATTCGTCTCCCTCCTAGCGAGGATTTCGGAATCATTAGGTCAAAGCTTTATACTTTTATCATTTGATTTTGTATCTTAATTTTCATTTTTTGAGCTCTCCTTTGAAATGTGATGGGTTTATTCATTTATTTTCGTTTTTCCATTTCGTTGCTCATATTCCTTCATTTTTCTGCAATTATGTATATAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTTGGAAACATTATAGTTGTTGACAATCTTCTGGTTGTTCCTCTGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCATAAAATTTTTGGACAGATTGGAGTAATTAAGGATGATGGTTTGTGGATGCCTATTGACCCTACTACACAGAAAACTTTAGGTTACTGCTTTATTGAGTACGGCACCCCACAGGTACTTTCTCATTATCTCACGCACTTTTTGTTGTTTCTACTAACTTTTCACTGAAACTTCATATATTTATCAAATTAAAATGTATTTTAAATAGTGTTATGAAGAAATAATGTTCTATAGTATAAATCTTGTTTAAGATAAAATGAAAGTCTCCTATCTTTGCCACTTTTGGTTCTTGTTGGCATTTGATGAAGTTCAATAGAGTGGCAGAAACTTGCAACCTCATCTTACTTTCTAGCTTAGCTGGTACTTAACTCTAGTCCCTTTAGGTGGGACTACTTTCAACCTCCACAGTCCATCCATTGTAATGGTGCCCTACACCTCTTTTTTACCATCACCTTATCTTCCGTTTAGAGGTGGAATATAACTACTATAGAGGTAGTTTGATGTTCATGAATTAATGACTTGTTTGACTTAACTTGTTATGATTATTTCCTAATCTCTCATTGTCTTTGCATACCAGTAATATATTGGCACAGCATTAGTGGTACATCATAAATATTCCTTGTTAGAATGGTCTTGAAATGGAAACTTTCTAGCATTCAGAAAGTGTGCACTATATGATGATGTGATATTTTGGATTACCACTAGACATGCGTTTAATTCAAGAGTATGTTTACCTTCATGGAATTCTGTTCCTATACGTTTTGTTACTATAGTTGTTTTTGCACTCGGCTGTGCTTCAAGGCTTGTTGTACGTCCTTTTTTTTCGTGTGTGTGTGTGATCTCATTTCTCTTATGTGTAATACTGTAGTTCTGATCCATGAATTGAGCATCTCATTTAATTTTAGTCATATTGTAGGAGGCTGAGTTTGTTAAAGAGAAGACTGATGGGTACAAGCTGGATAGAGCTCATATTTTCATAGTTAACATGTTTGAGGACTTCGACAGATTTATGAAAGTCCCAAATGAGTGGGCCCCTCCTAAAATTAGCCCATATACTTCTGGGGTAAACTATTTGCAACGTTACTTGATTTTTCTTCTCCACTGCTTCTTGTGATATGTTTTCTTGAGAAAAGGTGAGGGTTTTATGGATCATTTGAAGGTTATCTGAGAGCTGTGCTTAGCTAAATATTTTCCATGGGGAAAAGAACCATGGGAGAATGCCATTTTATGGATCAAATTATGCTGTCGTGGAAGTATGATGCTAATTGCTATTTACTTCTGAACATTTCAGGAGAATCTTCAACAGTGGCTAACTGATGAAAAAGCACGGAATCAGTTTGTTATCCGATCTGGTTCCAATATTGAGGTTTTCTAG

mRNA sequence

ATGGCGGACGTGATGCTGATGAAGGAAATTGAGGAAATGGCTGGTCGTCTTGGGATAGATCTCTCCCAAGTTGATTTTGACGCTATTCGTCTCCCTCCTAGCGAGGATTTCGGAATCATTAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTTGGAAACATTATAGTTGTTGACAATCTTCTGGTTGTTCCTCTGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCATAAAATTTTTGGACAGATTGGAGTAATTAAGGATGATGGTTTGTGGATGCCTATTGACCCTACTACACAGAAAACTTTAGGTTACTGCTTTATTGAGTACGGCACCCCACAGGAGAATCTTCAACAGTGGCTAACTGATGAAAAAGCACGGAATCAGTTTGTTATCCGATCTGGTTCCAATATTGAGGTTTTCTAG

Coding sequence (CDS)

ATGGCGGACGTGATGCTGATGAAGGAAATTGAGGAAATGGCTGGTCGTCTTGGGATAGATCTCTCCCAAGTTGATTTTGACGCTATTCGTCTCCCTCCTAGCGAGGATTTCGGAATCATTAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTTGGAAACATTATAGTTGTTGACAATCTTCTGGTTGTTCCTCTGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCATAAAATTTTTGGACAGATTGGAGTAATTAAGGATGATGGTTTGTGGATGCCTATTGACCCTACTACACAGAAAACTTTAGGTTACTGCTTTATTGAGTACGGCACCCCACAGGAGAATCTTCAACAGTGGCTAACTGATGAAAAAGCACGGAATCAGTTTGTTATCCGATCTGGTTCCAATATTGAGGTTTTCTAG

Protein sequence

MADVMLMKEIEEMAGRLGIDLSQVDFDAIRLPPSEDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLLVVPLEKFEKLEGVVHKIFGQIGVIKDDGLWMPIDPTTQKTLGYCFIEYGTPQENLQQWLTDEKARNQFVIRSGSNIEVF
Homology
[Close]
BLAST of Bhi06G001090 vs. Swiss-Prot
Match: sp|P56821|EIF3B_TOBAC (Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana tabacum OX=4097 GN=TIF3B1 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.4e-51
Identity = 105/195 (53.85%), Postives = 126/195 (64.62%), Query Frame = 0 

Query: 1   MADVMLMKEIEEMAGRLGIDLSQVDFDAIRLPPSEDFGIISDDEEVLQEESLEFDSGFGN 60
           MADV  M EI  +A R+G+DLSQ+D D+I LPP ED GI SDD+++++E+ LEFD+GFGN
Sbjct: 1   MADVTSMGEITAIAARIGVDLSQIDLDSIHLPPGEDCGIPSDDDDLMEEDPLEFDAGFGN 60

Query: 61  IIVVDNLLVVPLEKFEKLEGVVHKIFGQIGVIKDDGLWMPIDPTTQKTLGYCFIEYGTPQ 120
           I+VVDNL VVP EKFEKLEGVV KI+ Q+GVIK+DGLWMP+DP T KTLGYCFIEY TPQ
Sbjct: 61  ILVVDNLPVVPKEKFEKLEGVVRKIYSQLGVIKEDGLWMPVDPETHKTLGYCFIEYNTPQ 120

Query: 121 -------------------------------------------------ENLQQWLTDEK 147
                                                            ENLQQWLTDEK
Sbjct: 121 EAELSKEKTHGYKLDRSHIFAVNMFDDIERFLKVPDEWAPPEIKPYVPGENLQQWLTDEK 180

[Close]
BLAST of Bhi06G001090 vs. Swiss-Prot
Match: sp|Q9C5Z1|EIF3B_ARATH (Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana OX=3702 GN=TIF3B1 PE=1 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 5.9e-47
Identity = 100/192 (52.08%), Postives = 121/192 (63.02%), Query Frame = 0 

Query: 5   MLMKEIEEMAGRLGIDLSQVDFDAIRLPPSEDFGIISDDEEVLQEESLEFDSGFGNIIVV 64
           M + +I+  A +LGID SQV+FD+I+LPP EDFGI SDDE V Q++  EFD+GFGNIIVV
Sbjct: 1   MEVVDIDARAAKLGIDWSQVNFDSIQLPPGEDFGIESDDEAVYQDDQSEFDTGFGNIIVV 60

Query: 65  DNLLVVPLEKFEKLEGVVHKIFGQIGVIKDDGLWMPIDPTTQKTLGYCFIEYGTPQ---- 124
           D+L VVP EKFEKLEGVV KI+ Q+GVIK++GLWMP+DP T+ TLGYCFIE+ TPQ    
Sbjct: 61  DHLPVVPKEKFEKLEGVVKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQEAQN 120

Query: 125 ---------------------------------------------ENLQQWLTDEKARNQ 148
                                                        ENLQ+WLTDEKAR+Q
Sbjct: 121 AKEKSHGYKLDKSHIFAVNMFDDFDRLMNVKEEWEPPQARPYVPGENLQKWLTDEKARDQ 180

[Close]
BLAST of Bhi06G001090 vs. Swiss-Prot
Match: sp|Q6C1H8|EIF3B_YARLI (Eukaryotic translation initiation factor 3 subunit B OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=PRT1 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.9e-11
Identity = 43/160 (26.88%), Postives = 65/160 (40.62%), Query Frame = 0 

Query: 42  DDEEVLQEESLEFDSGFGNIIVVDNLLVVPLEKFEKLEGVVHKIFGQIGVIKDDGLWMPI 101
           D  ++ ++ ++  D GF + IVVD   V+P  K   L  V+ K FG +G IK+DG+++P 
Sbjct: 10  DFSDLEEKYAVNADEGFESFIVVDGAPVIPQAKQAALANVMKKFFGAVGKIKEDGIFIPF 69

Query: 102 DPTTQKTLGYCFIEYGT------------------------------------------- 148
           D  T K+ G+ FIEY T                                           
Sbjct: 70  DEATGKSTGFVFIEYETGEMAAAAVKSFHNKQFDKNHKLLVNKLSEVEKYGMQYDTLKTE 129

[Close]
BLAST of Bhi06G001090 vs. Swiss-Prot
Match: sp|P55884|EIF3B_HUMAN (Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens OX=9606 GN=EIF3B PE=1 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 3.5e-07
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0 

Query: 21  LSQVDFDAIRLPPSEDF-GIISDDE---EVLQEESLEFDSGFGNIIVVDNLLVVPLEKFE 80
           L   D D       EDF   +S++E   +VL++   E D G  ++IVVDN+  V  ++ E
Sbjct: 143 LENGDADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEAD-GIDSVIVVDNVPQVGPDRLE 202

Query: 81  KLEGVVHKIFGQIGVIKDDGLWMPIDPTTQKTLGYCFIEYGTP 120
           KL+ V+HKIF + G I +D  + P +    KT GY F+EY +P
Sbjct: 203 KLKNVIHKIFSKFGKITND--FYPEE--DGKTKGYIFLEYASP 240

[Close]
BLAST of Bhi06G001090 vs. Swiss-Prot
Match: sp|Q1HDZ5|EIF3B_BOMMO (Eukaryotic translation initiation factor 3 subunit B OS=Bombyx mori OX=7091 GN=eIF3-S9 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-06
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 0 

Query: 45  EVLQEESLEFDSGFGNIIVVDNLLVVPLEKFEKLEGVVHKIFGQIGVIKDDGLWMPIDPT 104
           ++L+++  E D G+ N++VVD    V  E+ EKL+ V++KIF + G I ++       PT
Sbjct: 46  DILEQKPKESD-GYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNE-----YYPT 105

Query: 105 TQK--TLGYCFIEYGTPQ 121
           T+   T GY F+EY  PQ
Sbjct: 106 TENGLTTGYIFLEYSNPQ 117

[Close]
BLAST of Bhi06G001090 vs. TAIR10
Match: AT5G27640.2 (translation initiation factor 3B1)

HSP 1 Score: 178.3 bits (451), Expect = 3.4e-45
Identity = 100/218 (45.87%), Postives = 121/218 (55.50%), Query Frame = 0 

Query: 5   MLMKEIEEMAGRLGIDLSQVDFDAIRLPPSEDFGIISDDEEVLQEESLEFDSGFGNIIVV 64
           M + +I+  A +LGID SQV+FD+I+LPP EDFGI SDDE V Q++  EFD+GFGNIIVV
Sbjct: 1   MEVVDIDARAAKLGIDWSQVNFDSIQLPPGEDFGIESDDEAVYQDDQSEFDTGFGNIIVV 60

Query: 65  DNLLVVPLEKFEKLEGVVHKIFGQIGVIKDDGLWMPIDPTTQKTLGYCFIEYGTPQ---- 124
           D+L VVP EKFEKLEGVV KI+ Q+GVIK++GLWMP+DP T+ TLGYCFIE+ TPQ    
Sbjct: 61  DHLPVVPKEKFEKLEGVVKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQKGAQ 120

Query: 125 ------------------------------------------------------------ 148
                                                                       
Sbjct: 121 TRLFLMVEYFLRVSLNVWGSLQEAQNAKEKSHGYKLDKSHIFAVNMFDDFDRLMNVKEEW 180

[Close]
BLAST of Bhi06G001090 vs. TAIR10
Match: AT5G25780.1 (eukaryotic translation initiation factor 3B-2)

HSP 1 Score: 170.2 bits (430), Expect = 9.2e-43
Identity = 90/188 (47.87%), Postives = 114/188 (60.64%), Query Frame = 0 

Query: 9   EIEEMAGRLGIDLSQVDFDAIRLPPSEDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLL 68
           +I+ +  +LGI+ S V+ D+I+LPP  DFGI SDDE V Q++  EFD+GFGNIIVVD+L 
Sbjct: 6   DIDVLTAQLGINWSDVNLDSIQLPPGNDFGIESDDESVYQDDQSEFDTGFGNIIVVDHLP 65

Query: 69  VVPLEKFEKLEGVVHKIFGQIGVIKDDGLWMPIDPTTQKTLGYCFIEYGTPQ-------- 128
           VVP EKFEKLEGVV KI+ Q+GVIK++GL MP+DP T+ TLGYCFIE+ TPQ        
Sbjct: 66  VVPKEKFEKLEGVVKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQEAQNAKEK 125

Query: 129 -----------------------------------------ENLQQWLTDEKARNQFVIR 148
                                                    ENLQ+WLTD+KAR+Q VIR
Sbjct: 126 SHGYKLDKSHIFAVNMFDDFDRLMNVKEEWEPPQERPYVPGENLQKWLTDDKARDQLVIR 185

[Close]
BLAST of Bhi06G001090 vs. TrEMBL
Match: tr|A0A0A0K581|A0A0A0K581_CUCSA (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis sativus OX=3659 GN=Csa_7G181640 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-63
Identity = 135/196 (68.88%), Postives = 140/196 (71.43%), Query Frame = 0 

Query: 1   MADVMLMKEIEEMAGRLGIDLSQVDFDAIRLPPSEDFGIISDDEEVLQEESLEFDSGFGN 60
           MADVMLMKEIE+ AGRLGIDLSQVDFDAIRLPP E+FGIISDDEEVLQEESLEFDSGFGN
Sbjct: 1   MADVMLMKEIEDSAGRLGIDLSQVDFDAIRLPPGENFGIISDDEEVLQEESLEFDSGFGN 60

Query: 61  IIVVDNLLVVPLEKFEKLEGVVHKIFGQIGVIKDDGLWMPIDPTTQKTLGYCFIEYGTPQ 120
           IIVVDNL VVP EKFEKLEGVV KIFGQIGVIKDDGLWMP+DPTT KTLGYCFIEYGTPQ
Sbjct: 61  IIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTTKTLGYCFIEYGTPQ 120

Query: 121 -------------------------------------------------ENLQQWLTDEK 148
                                                            ENLQQWLTDEK
Sbjct: 121 EAELAKEKTDGYKLDRAHIFTVNMFEEFNRLVKVPDEWAPPEINPYTPGENLQQWLTDEK 180

[Close]
BLAST of Bhi06G001090 vs. TrEMBL
Match: tr|A0A1S3CES0|A0A1S3CES0_CUCME (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=LOC103500082 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 2.0e-63
Identity = 135/196 (68.88%), Postives = 140/196 (71.43%), Query Frame = 0 

Query: 1   MADVMLMKEIEEMAGRLGIDLSQVDFDAIRLPPSEDFGIISDDEEVLQEESLEFDSGFGN 60
           MADV+LMKEIEE AGRLGIDLSQVDFDAIRLPP EDFGIISDDEEVLQEESLEFDSGFGN
Sbjct: 1   MADVVLMKEIEETAGRLGIDLSQVDFDAIRLPPGEDFGIISDDEEVLQEESLEFDSGFGN 60

Query: 61  IIVVDNLLVVPLEKFEKLEGVVHKIFGQIGVIKDDGLWMPIDPTTQKTLGYCFIEYGTPQ 120
           IIVVDNL VVP EKFEKLEGVV KIFGQIGVIKDDGLWMP+D TTQKTLGYCFIEYGTPQ
Sbjct: 61  IIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDHTTQKTLGYCFIEYGTPQ 120

Query: 121 -------------------------------------------------ENLQQWLTDEK 148
                                                            ENLQQWLTDEK
Sbjct: 121 EAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEVSPYTPGENLQQWLTDEK 180

[Close]
BLAST of Bhi06G001090 vs. TrEMBL
Match: tr|A0A0A0K4J9|A0A0A0K4J9_CUCSA (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis sativus OX=3659 GN=Csa_7G281370 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 2.0e-63
Identity = 135/196 (68.88%), Postives = 140/196 (71.43%), Query Frame = 0 

Query: 1   MADVMLMKEIEEMAGRLGIDLSQVDFDAIRLPPSEDFGIISDDEEVLQEESLEFDSGFGN 60
           MADV+LMKEIEE AGRLGIDLSQVDFDAIRLPP EDFGIISDDEEVLQEESLEFDSGFGN
Sbjct: 1   MADVVLMKEIEETAGRLGIDLSQVDFDAIRLPPGEDFGIISDDEEVLQEESLEFDSGFGN 60

Query: 61  IIVVDNLLVVPLEKFEKLEGVVHKIFGQIGVIKDDGLWMPIDPTTQKTLGYCFIEYGTPQ 120
           IIVVDNL VVP EKFEKLEGVV KIFGQIGVIKDDGLWMP+D TTQKTLGYCFIEYGTPQ
Sbjct: 61  IIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDRTTQKTLGYCFIEYGTPQ 120

Query: 121 -------------------------------------------------ENLQQWLTDEK 148
                                                            ENLQQWLTDEK
Sbjct: 121 EAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEVNPYTPGENLQQWLTDEK 180

[Close]
BLAST of Bhi06G001090 vs. TrEMBL
Match: tr|A0A1S3BIW9|A0A1S3BIW9_CUCME (Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=LOC103490196 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.3e-62
Identity = 132/196 (67.35%), Postives = 140/196 (71.43%), Query Frame = 0 

Query: 1   MADVMLMKEIEEMAGRLGIDLSQVDFDAIRLPPSEDFGIISDDEEVLQEESLEFDSGFGN 60
           MADVMLMKEIE+ AGRLGIDLS VDFDAIRLPP E+FGIISDDEEVLQEESLEFDSGFGN
Sbjct: 1   MADVMLMKEIEDTAGRLGIDLSLVDFDAIRLPPGENFGIISDDEEVLQEESLEFDSGFGN 60

Query: 61  IIVVDNLLVVPLEKFEKLEGVVHKIFGQIGVIKDDGLWMPIDPTTQKTLGYCFIEYGTPQ 120
           IIVVDNL +VP EKFEKLEGVV KIFGQIGVIKDDGLWMP+DPTT+KTLGYC+IEYGTPQ
Sbjct: 61  IIVVDNLPIVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTKKTLGYCYIEYGTPQ 120

Query: 121 -------------------------------------------------ENLQQWLTDEK 148
                                                            ENLQQWLTDEK
Sbjct: 121 EAELAKEKTDGYKLDRAHIFTVNMFEDFDRLLKVPDEWAPPEINPYTPGENLQQWLTDEK 180

[Close]
BLAST of Bhi06G001090 vs. TrEMBL
Match: tr|W9S9Y5|W9S9Y5_9ROSA (Eukaryotic translation initiation factor 3 subunit B OS=Morus notabilis OX=981085 GN=L484_007145 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.7e-54
Identity = 116/195 (59.49%), Postives = 131/195 (67.18%), Query Frame = 0 

Query: 1   MADVMLMKEIEEMAGRLGIDLSQVDFDAIRLPPSEDFGIISDDEEVLQEESLEFDSGFGN 60
           MADVMLMKEI++ A  LGIDLSQ+DFD+IRLPP EDFGI SDDE+V ++E+LEFDSGFGN
Sbjct: 1   MADVMLMKEIDDTAASLGIDLSQIDFDSIRLPPGEDFGIKSDDEDVYRDENLEFDSGFGN 60

Query: 61  IIVVDNLLVVPLEKFEKLEGVVHKIFGQIGVIKDDGLWMPIDPTTQKTLGYCFIEYGTPQ 120
           IIVVDNL VVP EKFEKLEGVV KI+ QI VIKDDG WMP+DP T+KTLGYCFIEY TPQ
Sbjct: 61  IIVVDNLPVVPREKFEKLEGVVRKIYSQISVIKDDGFWMPVDPETKKTLGYCFIEYNTPQ 120

Query: 121 -------------------------------------------------ENLQQWLTDEK 147
                                                            ENLQQWLTD+K
Sbjct: 121 EAELAKEKTHGYKLDRSHIFAVSMFDDFDRFMKVPDEWAPPEVKPYTPGENLQQWLTDDK 180

[Close]
BLAST of Bhi06G001090 vs. NCBI nr
Match: KGN44089.1 (hypothetical protein Csa_7G181640 [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 1.7e-63
Identity = 135/196 (68.88%), Postives = 140/196 (71.43%), Query Frame = 0 

Query: 1   MADVMLMKEIEEMAGRLGIDLSQVDFDAIRLPPSEDFGIISDDEEVLQEESLEFDSGFGN 60
           MADVMLMKEIE+ AGRLGIDLSQVDFDAIRLPP E+FGIISDDEEVLQEESLEFDSGFGN
Sbjct: 1   MADVMLMKEIEDSAGRLGIDLSQVDFDAIRLPPGENFGIISDDEEVLQEESLEFDSGFGN 60

Query: 61  IIVVDNLLVVPLEKFEKLEGVVHKIFGQIGVIKDDGLWMPIDPTTQKTLGYCFIEYGTPQ 120
           IIVVDNL VVP EKFEKLEGVV KIFGQIGVIKDDGLWMP+DPTT KTLGYCFIEYGTPQ
Sbjct: 61  IIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTTKTLGYCFIEYGTPQ 120

Query: 121 -------------------------------------------------ENLQQWLTDEK 148
                                                            ENLQQWLTDEK
Sbjct: 121 EAELAKEKTDGYKLDRAHIFTVNMFEEFNRLVKVPDEWAPPEINPYTPGENLQQWLTDEK 180

[Close]
BLAST of Bhi06G001090 vs. NCBI nr
Match: XP_004139759.2 (PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subunit B-like [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 1.7e-63
Identity = 135/196 (68.88%), Postives = 140/196 (71.43%), Query Frame = 0 

Query: 1   MADVMLMKEIEEMAGRLGIDLSQVDFDAIRLPPSEDFGIISDDEEVLQEESLEFDSGFGN 60
           MADVMLMKEIE+ AGRLGIDLSQVDFDAIRLPP E+FGIISDDEEVLQEESLEFDSGFGN
Sbjct: 1   MADVMLMKEIEDSAGRLGIDLSQVDFDAIRLPPGENFGIISDDEEVLQEESLEFDSGFGN 60

Query: 61  IIVVDNLLVVPLEKFEKLEGVVHKIFGQIGVIKDDGLWMPIDPTTQKTLGYCFIEYGTPQ 120
           IIVVDNL VVP EKFEKLEGVV KIFGQIGVIKDDGLWMP+DPTT KTLGYCFIEYGTPQ
Sbjct: 61  IIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTTKTLGYCFIEYGTPQ 120

Query: 121 -------------------------------------------------ENLQQWLTDEK 148
                                                            ENLQQWLTDEK
Sbjct: 121 EAELAKEKTDGYKLDRAHIFTVNMFEEFNRLVKVPDEWAPPEINPYTPGENLQQWLTDEK 180

[Close]
BLAST of Bhi06G001090 vs. NCBI nr
Match: XP_008461500.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Cucumis melo])

HSP 1 Score: 250.8 bits (639), Expect = 3.0e-63
Identity = 135/196 (68.88%), Postives = 140/196 (71.43%), Query Frame = 0 

Query: 1   MADVMLMKEIEEMAGRLGIDLSQVDFDAIRLPPSEDFGIISDDEEVLQEESLEFDSGFGN 60
           MADV+LMKEIEE AGRLGIDLSQVDFDAIRLPP EDFGIISDDEEVLQEESLEFDSGFGN
Sbjct: 1   MADVVLMKEIEETAGRLGIDLSQVDFDAIRLPPGEDFGIISDDEEVLQEESLEFDSGFGN 60

Query: 61  IIVVDNLLVVPLEKFEKLEGVVHKIFGQIGVIKDDGLWMPIDPTTQKTLGYCFIEYGTPQ 120
           IIVVDNL VVP EKFEKLEGVV KIFGQIGVIKDDGLWMP+D TTQKTLGYCFIEYGTPQ
Sbjct: 61  IIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDHTTQKTLGYCFIEYGTPQ 120

Query: 121 -------------------------------------------------ENLQQWLTDEK 148
                                                            ENLQQWLTDEK
Sbjct: 121 EAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEVSPYTPGENLQQWLTDEK 180

[Close]
BLAST of Bhi06G001090 vs. NCBI nr
Match: XP_004150392.2 (PREDICTED: eukaryotic translation initiation factor 3 subunit B [Cucumis sativus] >KGN44408.1 hypothetical protein Csa_7G281370 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 3.0e-63
Identity = 135/196 (68.88%), Postives = 140/196 (71.43%), Query Frame = 0 

Query: 1   MADVMLMKEIEEMAGRLGIDLSQVDFDAIRLPPSEDFGIISDDEEVLQEESLEFDSGFGN 60
           MADV+LMKEIEE AGRLGIDLSQVDFDAIRLPP EDFGIISDDEEVLQEESLEFDSGFGN
Sbjct: 1   MADVVLMKEIEETAGRLGIDLSQVDFDAIRLPPGEDFGIISDDEEVLQEESLEFDSGFGN 60

Query: 61  IIVVDNLLVVPLEKFEKLEGVVHKIFGQIGVIKDDGLWMPIDPTTQKTLGYCFIEYGTPQ 120
           IIVVDNL VVP EKFEKLEGVV KIFGQIGVIKDDGLWMP+D TTQKTLGYCFIEYGTPQ
Sbjct: 61  IIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDRTTQKTLGYCFIEYGTPQ 120

Query: 121 -------------------------------------------------ENLQQWLTDEK 148
                                                            ENLQQWLTDEK
Sbjct: 121 EAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEVNPYTPGENLQQWLTDEK 180

[Close]
BLAST of Bhi06G001090 vs. NCBI nr
Match: XP_022932539.1 (eukaryotic translation initiation factor 3 subunit B-like [Cucurbita moschata] >XP_022932540.1 eukaryotic translation initiation factor 3 subunit B-like [Cucurbita moschata])

HSP 1 Score: 250.4 bits (638), Expect = 3.9e-63
Identity = 134/196 (68.37%), Postives = 140/196 (71.43%), Query Frame = 0 

Query: 1   MADVMLMKEIEEMAGRLGIDLSQVDFDAIRLPPSEDFGIISDDEEVLQEESLEFDSGFGN 60
           MADVMLMK+IEE A RLGIDL+QVDFDAIRLPP EDFGIISDDEEVLQEESLEFDSGFGN
Sbjct: 1   MADVMLMKDIEETADRLGIDLAQVDFDAIRLPPGEDFGIISDDEEVLQEESLEFDSGFGN 60

Query: 61  IIVVDNLLVVPLEKFEKLEGVVHKIFGQIGVIKDDGLWMPIDPTTQKTLGYCFIEYGTPQ 120
           IIVVDNL VVP EKFEKLEGVV KIFGQIGVIKDDGLWMP+DP+TQKTLGYCFIEYGTPQ
Sbjct: 61  IIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPSTQKTLGYCFIEYGTPQ 120

Query: 121 -------------------------------------------------ENLQQWLTDEK 148
                                                            ENLQQWLTDEK
Sbjct: 121 EAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEINPYTPGENLQQWLTDEK 180

The following BLAST results are available for this feature:
BLAST of Bhi06G001090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P56821|EIF3B_TOBAC1.4e-5153.85Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana tabacum OX=409... [more]
sp|Q9C5Z1|EIF3B_ARATH5.9e-4752.08Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana OX=... [more]
sp|Q6C1H8|EIF3B_YARLI8.9e-1126.88Eukaryotic translation initiation factor 3 subunit B OS=Yarrowia lipolytica (str... [more]
sp|P55884|EIF3B_HUMAN3.5e-0737.86Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens OX=9606 GN=... [more]
sp|Q1HDZ5|EIF3B_BOMMO1.3e-0638.46Eukaryotic translation initiation factor 3 subunit B OS=Bombyx mori OX=7091 GN=e... [more]
BLAST of Bhi06G001090 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G27640.23.4e-4545.87translation initiation factor 3B1[more]
AT5G25780.19.2e-4347.87eukaryotic translation initiation factor 3B-2[more]
BLAST of Bhi06G001090 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K581|A0A0A0K581_CUCSA1.1e-6368.88Eukaryotic translation initiation factor 3 subunit B OS=Cucumis sativus OX=3659 ... [more]
tr|A0A1S3CES0|A0A1S3CES0_CUCME2.0e-6368.88Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=... [more]
tr|A0A0A0K4J9|A0A0A0K4J9_CUCSA2.0e-6368.88Eukaryotic translation initiation factor 3 subunit B OS=Cucumis sativus OX=3659 ... [more]
tr|A0A1S3BIW9|A0A1S3BIW9_CUCME1.3e-6267.35Eukaryotic translation initiation factor 3 subunit B OS=Cucumis melo OX=3656 GN=... [more]
tr|W9S9Y5|W9S9Y5_9ROSA1.7e-5459.49Eukaryotic translation initiation factor 3 subunit B OS=Morus notabilis OX=98108... [more]
BLAST of Bhi06G001090 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44089.11.7e-6368.88hypothetical protein Csa_7G181640 [Cucumis sativus][more]
XP_004139759.21.7e-6368.88PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subun... [more]
XP_008461500.13.0e-6368.88PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Cucumis me... [more]
XP_004150392.23.0e-6368.88PREDICTED: eukaryotic translation initiation factor 3 subunit B [Cucumis sativus... [more]
XP_022932539.13.9e-6368.37eukaryotic translation initiation factor 3 subunit B-like [Cucurbita moschata] >... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003743translation initiation factor activity
GO:0031369translation initiation factor binding
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR034363eIF3B_RRM
IPR011400EIF3B
IPR012677Nucleotide-bd_a/b_plait_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002183 cytoplasmic translational initiation
biological_process GO:0006413 translational initiation
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0070993 translation preinitiation complex
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0031369 translation initiation factor binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M001090Bhi06M001090mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 59..126
e-value: 1.5E-9
score: 39.7
IPR011400Eukaryotic translation initiation factor 3 subunit BPANTHERPTHR14068EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATEDcoord: 25..121
IPR034363eIF3B, RNA recognition motifCDDcd12278RRM_eIF3Bcoord: 59..121
e-value: 1.46743E-24
score: 90.7124
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 53..121

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi06G001090Wax gourdwgowgoB049
Bhi06G001090Cucumber (Gy14) v1cgywgoB095
Bhi06G001090Cucumber (Gy14) v1cgywgoB114
Bhi06G001090Cucumber (Gy14) v2cgybwgoB007
Bhi06G001090Cucumber (Gy14) v2cgybwgoB132
Bhi06G001090Cucurbita maxima (Rimu)cmawgoB0048
Bhi06G001090Cucurbita maxima (Rimu)cmawgoB0184
Bhi06G001090Cucurbita maxima (Rimu)cmawgoB0925
Bhi06G001090Cucurbita moschata (Rifu)cmowgoB0042
Bhi06G001090Cucurbita moschata (Rifu)cmowgoB0181
Bhi06G001090Cucurbita moschata (Rifu)cmowgoB0927
Bhi06G001090Cucurbita pepo (Zucchini)cpewgoB0115
Bhi06G001090Cucurbita pepo (Zucchini)cpewgoB0437
Bhi06G001090Cucurbita pepo (Zucchini)cpewgoB1018
Bhi06G001090Wild cucumber (PI 183967)cpiwgoB007
Bhi06G001090Wild cucumber (PI 183967)cpiwgoB138
Bhi06G001090Cucumber (Chinese Long) v3cucwgoB007
Bhi06G001090Cucumber (Chinese Long) v3cucwgoB145
Bhi06G001090Cucumber (Chinese Long) v2cuwgoB006
Bhi06G001090Cucumber (Chinese Long) v2cuwgoB136
Bhi06G001090Bottle gourd (USVL1VR-Ls)lsiwgoB109
Bhi06G001090Bottle gourd (USVL1VR-Ls)lsiwgoB479
Bhi06G001090Melon (DHL92) v3.6.1medwgoB273
Bhi06G001090Melon (DHL92) v3.6.1medwgoB456
Bhi06G001090Melon (DHL92) v3.5.1mewgoB272
Bhi06G001090Melon (DHL92) v3.5.1mewgoB453
Bhi06G001090Watermelon (Charleston Gray)wcgwgoB142
Bhi06G001090Watermelon (Charleston Gray)wcgwgoB512
Bhi06G001090Watermelon (97103) v2wgowmbB115
Bhi06G001090Watermelon (97103) v2wgowmbB142
Bhi06G001090Watermelon (97103) v1wgowmB138
Bhi06G001090Watermelon (97103) v1wgowmB157
Bhi06G001090Silver-seed gourdcarwgoB0735
Bhi06G001090Silver-seed gourdcarwgoB0919
Bhi06G001090Silver-seed gourdcarwgoB1164