Bhi06G001041 (gene) Wax gourd

Overview
NameBhi06G001041
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionPhotosystem II CP47 reaction center protein
Locationchr6 : 34410032 .. 34411030 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGTGTGACTTGTTAGAATTGATCCTATGGATACGACAGAGAAGAAGTCGGTCATCTTGATCAAGATGATTTTATCTCGTTGGATATTCAGTCTAGGCTAGTATCTGGAGCACAGAATATATGAAATAGATTCCAAAATATTAGAACAAATATTAGAACTATGATTCATACTTATCAGACCTCGTGGCTGGACTCCTAACAAACAAATGTTTCTTTGTCTTTTTTACATTATATTCAGTCATTGAATAAGCATTGAATAAGTGATAATCCAAGGGTTCTTACTCAGTGAATTTTTTAACTTTTTTTGGAAGGTTTTTTTTTTTTATTGAATCATCGTGGTTCTAGTCTGAATCTAAGGTTTAGAAAAACCTATTCATGGGGGGGTTGGAGTATCATAGGAGGGACTATAACGAATCCGAGTATTTAGAGTAACGAAGGTGTGGCTGGAGCACATATTGTGTTTTCTGGATTGTGCTTCATAGCAGCTGGCATTTGGTGTAATGGGATCTAGAAATATTTTGTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCTGAAAATTTTTTGAATTCATTTATTTCTCTCAGGGTTGGGTTGGTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGTCTGGGAATATGGGTATCTGATCCTTATGGATTAACCGGAAGGGTACAAGCTATAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTTTGGGCGGAATAGCCTCACATCATATTGCAGCAGGTACATTGGGCATATTAGCAGGCCTATTCCATCTTAGTGTTCGTCCGCCCAACGTCTATACAAAGGATTACATATGAGAAATATTGAAATCGTACTTTCGAGTAGTATCGCTGCTGTATTTTTTGCAGCTTTTGTTGTTGCCGGAACTATGAGGTATGGTTCAGAAATTACCTCGATTGAATTATTTGGGCCCACTCATTATCAATGGGATCAGGGATACTTCCAGTAA

mRNA sequence

ATGAGGTTGGGTTGGTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGTCTGGGAATATGGGTATCTGATCCTTATGGATTAACCGGAAGGGTACAAGCTATAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTTTGGGCGGAATAGCCTCACATCATATTGCAGCAGCTTTTGTTGTTGCCGGAACTATGAGGTATGGTTCAGAAATTACCTCGATTGAATTATTTGGGCCCACTCATTATCAATGGGATCAGGGATACTTCCAGTAA

Coding sequence (CDS)

ATGAGGTTGGGTTGGTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGTCTGGGAATATGGGTATCTGATCCTTATGGATTAACCGGAAGGGTACAAGCTATAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTTTGGGCGGAATAGCCTCACATCATATTGCAGCAGCTTTTGTTGTTGCCGGAACTATGAGGTATGGTTCAGAAATTACCTCGATTGAATTATTTGGGCCCACTCATTATCAATGGGATCAGGGATACTTCCAGTAA

Protein sequence

MRLGWFGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ
Homology
[Close]
BLAST of Bhi06G001041 vs. Swiss-Prot
Match: sp|Q2QD63|PSBB_CUCSA (Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 6.0e-37
Identity = 82/134 (61.19%), Postives = 83/134 (61.94%), Query Frame = 0 

Query: 3   LGWFGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA--- 62
           LG FGFGAFHVTGLYG GIWVSDPYGLTGRVQA+NPAWGVEGFDPFV GGIASHHIA   
Sbjct: 148 LGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGT 207

Query: 63  ----------------------------------------AAFVVAGTMRYGSEITSIEL 94
                                                   AAFVVAGTM YGS  T IEL
Sbjct: 208 LGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIEL 267

[Close]
BLAST of Bhi06G001041 vs. Swiss-Prot
Match: sp|Q09WZ1|PSBB_MORIN (Photosystem II CP47 reaction center protein OS=Morus indica OX=248361 GN=psbB PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.0e-36
Identity = 80/131 (61.07%), Postives = 81/131 (61.83%), Query Frame = 0 

Query: 6   FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA------ 65
           FGFGAFHVTGLYG GIWVSDPYGLTGRVQA+NPAWGVEGFDPFV GGIASHHIA      
Sbjct: 151 FGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGI 210

Query: 66  -------------------------------------AAFVVAGTMRYGSEITSIELFGP 94
                                                AAFVVAGTM YGS  T IELFGP
Sbjct: 211 LAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGP 270

[Close]
BLAST of Bhi06G001041 vs. Swiss-Prot
Match: sp|A6MMN3|PSBB_DIOEL (Photosystem II CP47 reaction center protein OS=Dioscorea elephantipes OX=145284 GN=psbB PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-35
Identity = 80/134 (59.70%), Postives = 82/134 (61.19%), Query Frame = 0 

Query: 3   LGWFGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA--- 62
           L  FGFGAFHVTGLYG GIWVSDPYGLTG+VQ+INPAWGVEGFDPFV GGIASHHIA   
Sbjct: 148 LACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQSINPAWGVEGFDPFVPGGIASHHIAAGT 207

Query: 63  ----------------------------------------AAFVVAGTMRYGSEITSIEL 94
                                                   AAFVVAGTM YGS  T IEL
Sbjct: 208 LGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIEL 267

[Close]
BLAST of Bhi06G001041 vs. Swiss-Prot
Match: sp|A4GGD1|PSBB_PHAVU (Photosystem II CP47 reaction center protein OS=Phaseolus vulgaris OX=3885 GN=psbB PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-35
Identity = 77/131 (58.78%), Postives = 81/131 (61.83%), Query Frame = 0 

Query: 6   FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA------ 65
           FGFGAFHVTGLYG GIWVSDPYGLTGR+Q++NPAWGVEGFDPFV GG+ASHHIA      
Sbjct: 151 FGFGAFHVTGLYGPGIWVSDPYGLTGRIQSVNPAWGVEGFDPFVPGGVASHHIAAGTLGI 210

Query: 66  -------------------------------------AAFVVAGTMRYGSEITSIELFGP 94
                                                AAFVVAGTM YGS  T IELFGP
Sbjct: 211 LAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGP 270

[Close]
BLAST of Bhi06G001041 vs. Swiss-Prot
Match: sp|Q2PMQ9|PSBB_SOYBN (Photosystem II CP47 reaction center protein OS=Glycine max OX=3847 GN=psbB PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-35
Identity = 77/131 (58.78%), Postives = 81/131 (61.83%), Query Frame = 0 

Query: 6   FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA------ 65
           FGFGAFHVTGLYG GIWVSDPYGLTGR+Q++NPAWGVEGFDPFV GG+ASHHIA      
Sbjct: 151 FGFGAFHVTGLYGPGIWVSDPYGLTGRIQSVNPAWGVEGFDPFVPGGVASHHIAAGTLGI 210

Query: 66  -------------------------------------AAFVVAGTMRYGSEITSIELFGP 94
                                                AAFVVAGTM YGS  T IELFGP
Sbjct: 211 LAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGP 270

[Close]
BLAST of Bhi06G001041 vs. TAIR10
Match: ATCG00680.1 (photosystem II reaction center protein B)

HSP 1 Score: 149.1 bits (375), Expect = 1.4e-36
Identity = 78/131 (59.54%), Postives = 80/131 (61.07%), Query Frame = 0 

Query: 6   FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA------ 65
           FGFGAFHVTGLYG GIWVSDPYGLTG+VQ +NPAWGVEGFDPFV GGIASHHIA      
Sbjct: 151 FGFGAFHVTGLYGPGIWVSDPYGLTGKVQPVNPAWGVEGFDPFVPGGIASHHIAAGTLGI 210

Query: 66  -------------------------------------AAFVVAGTMRYGSEITSIELFGP 94
                                                AAFVVAGTM YGS  T IELFGP
Sbjct: 211 LAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGP 270

[Close]
BLAST of Bhi06G001041 vs. TrEMBL
Match: tr|Q7G6A4|Q7G6A4_ORYSJ (Os10g0356500 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNAb0075K12.30 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.1e-39
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 6   FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVA 65
           FGFGAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVA
Sbjct: 27  FGFGAFHVTGLYGPGIWVSDPYGLTGKVQAVNPAWGAEGFDPFVPGGIASHHIAAAFVVA 86

Query: 66  GTMRYGSEITSIELFGPTHYQWDQGYFQ 94
           GTM YGS  T IELFGPT YQWDQGYFQ
Sbjct: 87  GTMWYGSATTPIELFGPTRYQWDQGYFQ 114

[Close]
BLAST of Bhi06G001041 vs. TrEMBL
Match: tr|A0A287EA23|A0A287EA23_HORVV (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.1e-39
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 6  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVA 65
          FGFGAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVA
Sbjct: 9  FGFGAFHVTGLYGPGIWVSDPYGLTGKVQAVNPAWGAEGFDPFVPGGIASHHIAAAFVVA 68

Query: 66 GTMRYGSEITSIELFGPTHYQWDQGYFQ 94
          GTM YGS  T IELFGPT YQWDQGYFQ
Sbjct: 69 GTMWYGSATTPIELFGPTRYQWDQGYFQ 96

[Close]
BLAST of Bhi06G001041 vs. TrEMBL
Match: tr|A0A287EBE0|A0A287EBE0_HORVV (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.1e-39
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 6  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVA 65
          FGFGAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVA
Sbjct: 9  FGFGAFHVTGLYGPGIWVSDPYGLTGKVQAVNPAWGAEGFDPFVPGGIASHHIAAAFVVA 68

Query: 66 GTMRYGSEITSIELFGPTHYQWDQGYFQ 94
          GTM YGS  T IELFGPT YQWDQGYFQ
Sbjct: 69 GTMWYGSATTPIELFGPTRYQWDQGYFQ 96

[Close]
BLAST of Bhi06G001041 vs. TrEMBL
Match: tr|A0A287U562|A0A287U562_HORVV (Photosystem II CP47 reaction center protein OS=Hordeum vulgare subsp. vulgare OX=112509 GN=4525075 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.1e-39
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 6   FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVA 65
           FGFGAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVA
Sbjct: 63  FGFGAFHVTGLYGPGIWVSDPYGLTGKVQAVNPAWGAEGFDPFVPGGIASHHIAAAFVVA 122

Query: 66  GTMRYGSEITSIELFGPTHYQWDQGYFQ 94
           GTM YGS  T IELFGPT YQWDQGYFQ
Sbjct: 123 GTMWYGSATTPIELFGPTRYQWDQGYFQ 150

[Close]
BLAST of Bhi06G001041 vs. TrEMBL
Match: tr|A0A287RJH3|A0A287RJH3_HORVV (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.1e-39
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 6  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVA 65
          FGFGAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVA
Sbjct: 9  FGFGAFHVTGLYGPGIWVSDPYGLTGKVQAVNPAWGAEGFDPFVPGGIASHHIAAAFVVA 68

Query: 66 GTMRYGSEITSIELFGPTHYQWDQGYFQ 94
          GTM YGS  T IELFGPT YQWDQGYFQ
Sbjct: 69 GTMWYGSATTPIELFGPTRYQWDQGYFQ 96

[Close]
BLAST of Bhi06G001041 vs. NCBI nr
Match: AAL79337.1 (Putative Photosystem II P680 chlorophyll A apoprotein [Oryza sativa] >AAM48276.1 Putative Photosystem II P680 chlorophyll A apoprotein [Oryza sativa Japonica Group] >AAP53265.1 Photosystem II P680 chlorophyll A apoprotein, putative, expressed [Oryza sativa Japonica Group] >BAF26336.1 Os10g0356500 [Oryza sativa Japonica Group])

HSP 1 Score: 170.2 bits (430), Expect = 3.2e-39
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 6   FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVA 65
           FGFGAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVA
Sbjct: 27  FGFGAFHVTGLYGPGIWVSDPYGLTGKVQAVNPAWGAEGFDPFVPGGIASHHIAAAFVVA 86

Query: 66  GTMRYGSEITSIELFGPTHYQWDQGYFQ 94
           GTM YGS  T IELFGPT YQWDQGYFQ
Sbjct: 87  GTMWYGSATTPIELFGPTRYQWDQGYFQ 114

[Close]
BLAST of Bhi06G001041 vs. NCBI nr
Match: PKA65681.1 (Photosystem II CP47 chlorophyll apoprotein [Apostasia shenzhenica])

HSP 1 Score: 169.1 bits (427), Expect = 7.2e-39
Identity = 77/88 (87.50%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 6   FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVA 65
           FGFGAFHVTGLYG GIWVSDPYGLTG+VQ++NPAWG EGFDPFV GGIASHHIAAAFVVA
Sbjct: 41  FGFGAFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGAEGFDPFVPGGIASHHIAAAFVVA 100

Query: 66  GTMRYGSEITSIELFGPTHYQWDQGYFQ 94
           GTM YGS  T IELFGPT YQWDQGYFQ
Sbjct: 101 GTMWYGSATTPIELFGPTRYQWDQGYFQ 128

[Close]
BLAST of Bhi06G001041 vs. NCBI nr
Match: ABA96142.1 (Photosystem II P680 chlorophyll A apoprotein, putative [Oryza sativa Japonica Group])

HSP 1 Score: 167.5 bits (423), Expect = 2.1e-38
Identity = 77/88 (87.50%), Postives = 79/88 (89.77%), Query Frame = 0 

Query: 6  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVA 65
          FG GAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVA
Sbjct: 9  FGVGAFHVTGLYGPGIWVSDPYGLTGKVQAVNPAWGAEGFDPFVPGGIASHHIAAAFVVA 68

Query: 66 GTMRYGSEITSIELFGPTHYQWDQGYFQ 94
          GTM YGS  T IELFGPT YQWDQGYFQ
Sbjct: 69 GTMWYGSATTPIELFGPTRYQWDQGYFQ 96

[Close]
BLAST of Bhi06G001041 vs. NCBI nr
Match: OMP13931.1 (Photosystem antenna protein-like protein [Corchorus olitorius])

HSP 1 Score: 158.7 bits (400), Expect = 9.7e-36
Identity = 77/102 (75.49%), Postives = 79/102 (77.45%), Query Frame = 0 

Query: 6   FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAA---- 65
           FGFGAFHVTGLYG GIWVSDPYGLTG+VQ +NPAWGVEGFDPFV GGIASHHIAA     
Sbjct: 46  FGFGAFHVTGLYGPGIWVSDPYGLTGKVQPVNPAWGVEGFDPFVPGGIASHHIAAGTLGI 105

Query: 66  ----------FVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ 94
                     FVVAGTM YGS  T IELFGPT YQWDQGYFQ
Sbjct: 106 LAGLFHLSVPFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQ 147

[Close]
BLAST of Bhi06G001041 vs. NCBI nr
Match: YP_247626.1 (photosystem II 47 kDa protein [Cucumis sativus] >CAJ00785.1 photosystem II 47kDa protein (chloroplast) [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.8e-34
Identity = 82/134 (61.19%), Postives = 83/134 (61.94%), Query Frame = 0 

Query: 3   LGWFGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA--- 62
           LG FGFGAFHVTGLYG GIWVSDPYGLTGRVQA+NPAWGVEGFDPFV GGIASHHIA   
Sbjct: 148 LGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGT 207

Query: 63  ----------------------------------------AAFVVAGTMRYGSEITSIEL 94
                                                   AAFVVAGTM YGS  T IEL
Sbjct: 208 LGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIEL 267

The following BLAST results are available for this feature:
BLAST of Bhi06G001041 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q2QD63|PSBB_CUCSA6.0e-3761.19Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB P... [more]
sp|Q09WZ1|PSBB_MORIN3.0e-3661.07Photosystem II CP47 reaction center protein OS=Morus indica OX=248361 GN=psbB PE... [more]
sp|A6MMN3|PSBB_DIOEL1.1e-3559.70Photosystem II CP47 reaction center protein OS=Dioscorea elephantipes OX=145284 ... [more]
sp|A4GGD1|PSBB_PHAVU1.1e-3558.78Photosystem II CP47 reaction center protein OS=Phaseolus vulgaris OX=3885 GN=psb... [more]
sp|Q2PMQ9|PSBB_SOYBN1.1e-3558.78Photosystem II CP47 reaction center protein OS=Glycine max OX=3847 GN=psbB PE=3 ... [more]
BLAST of Bhi06G001041 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00680.11.4e-3659.54photosystem II reaction center protein B[more]
BLAST of Bhi06G001041 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|Q7G6A4|Q7G6A4_ORYSJ2.1e-3988.64Os10g0356500 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNAb0075K12.3... [more]
tr|A0A287EA23|A0A287EA23_HORVV2.1e-3988.64Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
tr|A0A287EBE0|A0A287EBE0_HORVV2.1e-3988.64Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
tr|A0A287U562|A0A287U562_HORVV2.1e-3988.64Photosystem II CP47 reaction center protein OS=Hordeum vulgare subsp. vulgare OX... [more]
tr|A0A287RJH3|A0A287RJH3_HORVV2.1e-3988.64Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
BLAST of Bhi06G001041 vs. NCBI nr
Match NameE-valueIdentityDescription
AAL79337.13.2e-3988.64Putative Photosystem II P680 chlorophyll A apoprotein [Oryza sativa] >AAM48276.1... [more]
PKA65681.17.2e-3987.50Photosystem II CP47 chlorophyll apoprotein [Apostasia shenzhenica][more]
ABA96142.12.1e-3887.50Photosystem II P680 chlorophyll A apoprotein, putative [Oryza sativa Japonica Gr... [more]
OMP13931.19.7e-3675.49Photosystem antenna protein-like protein [Corchorus olitorius][more]
YP_247626.11.8e-3461.19photosystem II 47 kDa protein [Cucumis sativus] >CAJ00785.1 photosystem II 47kDa... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016168chlorophyll binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0009521photosystem
Vocabulary: Biological Process
TermDefinition
GO:0019684photosynthesis, light reaction
GO:0009767photosynthetic electron transport chain
Vocabulary: INTERPRO
TermDefinition
IPR036001PS_II_antenna-like_sf
IPR000932PS_antenna-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009521 photosystem
cellular_component GO:0016020 membrane
molecular_function GO:0016168 chlorophyll binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M001041Bhi06M001041mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 3..60
e-value: 1.6E-17
score: 63.3
coord: 60..93
e-value: 8.4E-10
score: 37.8
IPR000932Photosystem antenna protein-likePANTHERPTHR33180FAMILY NOT NAMEDcoord: 5..60
coord: 60..93
NoneNo IPR availablePANTHERPTHR33180:SF5PHOTOSYSTEM II CP47 REACTION CENTER PROTEINcoord: 5..60
coord: 60..93
IPR036001Photosystem antenna protein-like superfamilySUPERFAMILYSSF161077Photosystem II antenna protein-likecoord: 3..93

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi06G001041Cucumber (Gy14) v2cgybwgoB132
Bhi06G001041Cucurbita maxima (Rimu)cmawgoB0184
Bhi06G001041Cucurbita maxima (Rimu)cmawgoB0925
Bhi06G001041Cucurbita moschata (Rifu)cmowgoB0181
Bhi06G001041Cucurbita moschata (Rifu)cmowgoB0927
Bhi06G001041Cucurbita pepo (Zucchini)cpewgoB1018
Bhi06G001041Wild cucumber (PI 183967)cpiwgoB138
Bhi06G001041Cucumber (Chinese Long) v3cucwgoB145
Bhi06G001041Cucumber (Chinese Long) v2cuwgoB136
Bhi06G001041Bottle gourd (USVL1VR-Ls)lsiwgoB109
Bhi06G001041Melon (DHL92) v3.6.1medwgoB456
Bhi06G001041Melon (DHL92) v3.5.1mewgoB453
Bhi06G001041Watermelon (Charleston Gray)wcgwgoB142
Bhi06G001041Watermelon (97103) v2wgowmbB115
Bhi06G001041Watermelon (97103) v1wgowmB138