Bhi06G000831 (gene) Wax gourd

Overview
NameBhi06G000831
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionreplication factor C subunit 3
Locationchr6 : 25529501 .. 25530427 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTGGGTCGACAAGTATCGCCCTAAAACCTTAGACCAGATCACAGTTCACCAAGACGTAGCACAGAATCTTAAGAAATTGGTAACCGAATTTCGCTATTACTTTTTCTTGCATTCATGAATTCACACTTCAATTCGGCGATTTTGATGTGGGTTTTCCGTAAATATTCTCCTAGGTTACCGAACAGGACTGCCTCATTTGCTTTCTATGGCCCCTTCAGTTCCGGAAAAAACCCTAGTCAGTGCCCTCATCCGCAGATGTTCGGAGCCAGTGCGGAGAAAGTATAGCTCTTACTTTTTGTTTTTGTGCTTTTATTCTGGGGAATTGTGTGATTAGTTTGTTTTCTATGACTGTTCTTGTATTTGATCATCTCTTGCCTTTTGGCTGCAGGTGAAGGTGGAGAACAAAACGTGGAAAGTTGATGTAAGTTTCGGTTGTTTAAGCCCATTTGGTACCATTTGATTTTTGAAAATTAAGCATGTTTTTGCTCGATTTCTTACAATGGTAAAAAAGAAAAAAAAAGAATAATGATAAGTTTTAAAAAATGGCTGGGTTTTGAAAAGTTTTGGTAGAGAGTAGATAGTTGAGCAAAAAATTTATAGTGTGAAAGGGTGTGTGTGTGTATAGGCGTTCTTTTAAAATGAAACAAAAAACCAAATGGTAGTGATGTCTCTTTCCAGATGCCTTGGAAAGCAATTGAATTCAGATTGTGGGGATAGAGATTTTTAGTTATCATTTTTTCTGATTACTACTTCTGAATATTGTAGGAATAGCATAAATTTTAATTAGTTGAAGCTGTTTTTTGGCTGTTTATCTCTATATTCTCATCATCTCTTTCTCTCTCTATTTCTACGCCCTTCATTTTTTGTTTTTCTTCTCAGGCTGGAACTAGAACTATCGATATAGAGTTGACCACCTTATCAA

mRNA sequence

ATGCTGTGGGTCGACAAGTATCGCCCTAAAACCTTAGACCAGATCACAGTTCACCAAGACGTAGCACAGAATCTTAAGAAATTGGTGAAGGTGGAGAACAAAACGTGGAAAGTTGATGCTGGAACTAGAACTATCGATATAGAGTTGACCACCTTATCAA

Coding sequence (CDS)

ATGCTGTGGGTCGACAAGTATCGCCCTAAAACCTTAGACCAGATCACAGTTCACCAAGACGTAGCACAGAATCTTAAGAAATTGGTGAAGGTGGAGAACAAAACGTGGAAAGTTGATGCTGGAACTAGAACTATCGATATAGAGTTGACCACCTTATCAA

Protein sequence

MLWVDKYRPKTLDQITVHQDVAQNLKKLVKVENKTWKVDAGTRTIDIELTTLS
Homology
[Close]
BLAST of Bhi06G000831 vs. Swiss-Prot
Match: sp|Q8VXX4|RFC3_ARATH (Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.0e-13
Identity = 42/90 (46.67%), Postives = 50/90 (55.56%), Query Frame = 0 

Query: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKL-------------------------------- 54
          MLWVDKYRPK+LD++ VH+D+AQ LKKL                                
Sbjct: 1  MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

[Close]
BLAST of Bhi06G000831 vs. Swiss-Prot
Match: sp|Q852K3|RFC5_ORYSJ (Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-12
Identity = 41/90 (45.56%), Postives = 47/90 (52.22%), Query Frame = 0 

Query: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKL-------------------------------- 54
          MLWVDKYRPKTLD++TVH  VAQNLKKL                                
Sbjct: 1  MLWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG 60

[Close]
BLAST of Bhi06G000831 vs. TAIR10
Match: AT5G27740.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-14
Identity = 42/90 (46.67%), Postives = 50/90 (55.56%), Query Frame = 0 

Query: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKL-------------------------------- 54
          MLWVDKYRPK+LD++ VH+D+AQ LKKL                                
Sbjct: 1  MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

[Close]
BLAST of Bhi06G000831 vs. TrEMBL
Match: tr|A0A1S3B4A5|A0A1S3B4A5_CUCME (replication factor C subunit 3 OS=Cucumis melo OX=3656 GN=LOC103486020 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 53/90 (58.89%), Postives = 53/90 (58.89%), Query Frame = 0 

Query: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKL-------------------------------- 54
          MLWVDKYRPKTLDQITVHQDVAQNLKKL                                
Sbjct: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

[Close]
BLAST of Bhi06G000831 vs. TrEMBL
Match: tr|A0A0A0KYY3|A0A0A0KYY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G579870 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 53/90 (58.89%), Postives = 53/90 (58.89%), Query Frame = 0 

Query: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKL-------------------------------- 54
          MLWVDKYRPKTLDQITVHQDVAQNLKKL                                
Sbjct: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

[Close]
BLAST of Bhi06G000831 vs. TrEMBL
Match: tr|A0A2N9GLX0|A0A2N9GLX0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28457 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14
Identity = 50/90 (55.56%), Postives = 53/90 (58.89%), Query Frame = 0 

Query: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKL-------------------------------- 54
          MLWVDKYRPKTLDQITVHQD+AQNLKKL                                
Sbjct: 1  MLWVDKYRPKTLDQITVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQMFG 60

[Close]
BLAST of Bhi06G000831 vs. TrEMBL
Match: tr|W9R4F7|W9R4F7_9ROSA (Replication factor C subunit 3 OS=Morus notabilis OX=981085 GN=L484_009639 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.9e-14
Identity = 49/90 (54.44%), Postives = 52/90 (57.78%), Query Frame = 0 

Query: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKL-------------------------------- 54
          MLWVDKYRPKTLDQ+ VHQDVAQNLKKL                                
Sbjct: 1  MLWVDKYRPKTLDQVLVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60

[Close]
BLAST of Bhi06G000831 vs. TrEMBL
Match: tr|B9SI66|B9SI66_RICCO (Replication factor C / DNA polymerase III gamma-tau subunit, putative OS=Ricinus communis OX=3988 GN=RCOM_1321180 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.7e-14
Identity = 47/90 (52.22%), Postives = 52/90 (57.78%), Query Frame = 0 

Query: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKL-------------------------------- 54
          MLWVDKYRPKTLDQI VH+D+AQNLKKL                                
Sbjct: 1  MLWVDKYRPKTLDQIMVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60

[Close]
BLAST of Bhi06G000831 vs. NCBI nr
Match: XP_004144654.1 (PREDICTED: replication factor C subunit 3 [Cucumis sativus] >KGN54900.1 hypothetical protein Csa_4G579870 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-15
Identity = 53/90 (58.89%), Postives = 53/90 (58.89%), Query Frame = 0 

Query: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKL-------------------------------- 54
          MLWVDKYRPKTLDQITVHQDVAQNLKKL                                
Sbjct: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

[Close]
BLAST of Bhi06G000831 vs. NCBI nr
Match: XP_008442036.1 (PREDICTED: replication factor C subunit 3 [Cucumis melo] >XP_008442037.1 PREDICTED: replication factor C subunit 3 [Cucumis melo] >XP_008442038.1 PREDICTED: replication factor C subunit 3 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-15
Identity = 53/90 (58.89%), Postives = 53/90 (58.89%), Query Frame = 0 

Query: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKL-------------------------------- 54
          MLWVDKYRPKTLDQITVHQDVAQNLKKL                                
Sbjct: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

[Close]
BLAST of Bhi06G000831 vs. NCBI nr
Match: XP_022154548.1 (replication factor C subunit 3 [Momordica charantia] >XP_022154549.1 replication factor C subunit 3 [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 2.4e-15
Identity = 52/90 (57.78%), Postives = 53/90 (58.89%), Query Frame = 0 

Query: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKL-------------------------------- 54
          MLWVDKYRPKTLDQ+TVHQDVAQNLKKL                                
Sbjct: 1  MLWVDKYRPKTLDQVTVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

[Close]
BLAST of Bhi06G000831 vs. NCBI nr
Match: XP_022950837.1 (replication factor C subunit 3 isoform X1 [Cucurbita moschata])

HSP 1 Score: 85.9 bits (211), Expect = 4.5e-14
Identity = 49/90 (54.44%), Postives = 52/90 (57.78%), Query Frame = 0 

Query: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKL-------------------------------- 54
          MLWVDKYRPKTLDQITVHQDVAQNLKKL                                
Sbjct: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFG 60

[Close]
BLAST of Bhi06G000831 vs. NCBI nr
Match: XP_022950838.1 (replication factor C subunit 3 isoform X2 [Cucurbita moschata])

HSP 1 Score: 85.9 bits (211), Expect = 4.5e-14
Identity = 49/90 (54.44%), Postives = 52/90 (57.78%), Query Frame = 0 

Query: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKL-------------------------------- 54
          MLWVDKYRPKTLDQITVHQDVAQNLKKL                                
Sbjct: 1  MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFG 60

The following BLAST results are available for this feature:
BLAST of Bhi06G000831 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8VXX4|RFC3_ARATH2.0e-1346.67Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1[more]
sp|Q852K3|RFC5_ORYSJ2.2e-1245.56Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 ... [more]
BLAST of Bhi06G000831 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G27740.11.1e-1446.67ATPase family associated with various cellular activities (AAA) [more]
BLAST of Bhi06G000831 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B4A5|A0A1S3B4A5_CUCME1.2e-1558.89replication factor C subunit 3 OS=Cucumis melo OX=3656 GN=LOC103486020 PE=4 SV=1[more]
tr|A0A0A0KYY3|A0A0A0KYY3_CUCSA1.2e-1558.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G579870 PE=4 SV=1[more]
tr|A0A2N9GLX0|A0A2N9GLX0_FAGSY1.3e-1455.56Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28457 PE=4 SV=1[more]
tr|W9R4F7|W9R4F7_9ROSA3.9e-1454.44Replication factor C subunit 3 OS=Morus notabilis OX=981085 GN=L484_009639 PE=4 ... [more]
tr|B9SI66|B9SI66_RICCO8.7e-1452.22Replication factor C / DNA polymerase III gamma-tau subunit, putative OS=Ricinus... [more]
BLAST of Bhi06G000831 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144654.11.8e-1558.89PREDICTED: replication factor C subunit 3 [Cucumis sativus] >KGN54900.1 hypothet... [more]
XP_008442036.11.8e-1558.89PREDICTED: replication factor C subunit 3 [Cucumis melo] >XP_008442037.1 PREDICT... [more]
XP_022154548.12.4e-1557.78replication factor C subunit 3 [Momordica charantia] >XP_022154549.1 replication... [more]
XP_022950837.14.5e-1454.44replication factor C subunit 3 isoform X1 [Cucurbita moschata][more]
XP_022950838.14.5e-1454.44replication factor C subunit 3 isoform X2 [Cucurbita moschata][more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M000831Bhi06M000831mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.40.50.300coord: 1..46
e-value: 7.9E-7
score: 31.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi06G000831Cucumber (Gy14) v1cgywgoB561
Bhi06G000831Cucumber (Gy14) v2cgybwgoB134
Bhi06G000831Cucurbita maxima (Rimu)cmawgoB0932
Bhi06G000831Cucurbita moschata (Rifu)cmowgoB0930
Bhi06G000831Cucurbita pepo (Zucchini)cpewgoB0117
Bhi06G000831Wild cucumber (PI 183967)cpiwgoB140
Bhi06G000831Cucumber (Chinese Long) v3cucwgoB147
Bhi06G000831Cucumber (Chinese Long) v2cuwgoB140
Bhi06G000831Bottle gourd (USVL1VR-Ls)lsiwgoB111
Bhi06G000831Melon (DHL92) v3.6.1medwgoB458
Bhi06G000831Melon (DHL92) v3.5.1mewgoB455
Bhi06G000831Silver-seed gourdcarwgoB0289