Bhi06G000805 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi06G000805
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	NBS-LRR resistance protein
Location	chr6 : 24931551 .. 24931823 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCTACTATAGACGAAATCATGGTGCACTTATGGATGACAGTGTCTCCAGAATTGAAGTGTATAGAATGGGAGGTGATGGAAAAACAATATTAATGAAAGAGATTTCGAGAATAGTTATGGAGAAAAAGTTATTTGATGAAGTTGTCACATCAACCATAAGTCAGACCCCGGACATAAAAACAATTCAAGGACAACTTTTTGATAAGCTTAGGCTGAAATTTGACCAAGAAACAGACGAAGGAAGGCCCTTATGCTACATAAAAGGTTGA

mRNA sequence

AAAACCTACTATAGACGAAATCATGGTGCACTTATGGATGACAGTGTCTCCAGAATTGAAGTGTATAGAATGGGAGGTGATGGAAAAACAATATTAATGAAAGAGATTTCGAGAATAGTTATGGAGAAAAAGTTATTTGATGAAGTTGTCACATCAACCATAAGTCAGACCCCGGACATAAAAACAATTCAAGGACAACTTTTTGATAAGCTTAGGCTGAAATTTGACCAAGAAACAGACGAAGGAAGGCCCTTATGCTACATAAAAGGTTGA

Coding sequence (CDS)

AAAACCTACTATAGACGAAATCATGGTGCACTTATGGATGACAGTGTCTCCAGAATTGAAGTGTATAGAATGGGAGGTGATGGAAAAACAATATTAATGAAAGAGATTTCGAGAATAGTTATGGAGAAAAAGTTATTTGATGAAGTTGTCACATCAACCATAAGTCAGACCCCGGACATAAAAACAATTCAAGGACAACTTTTTGATAAGCTTAGGCTGAAATTTGACCAAGAAACAGACGAAGGAAGGCCCTTATGCTACATAAAAGGTTGA

Protein sequence

KTYYRRNHGALMDDSVSRIEVYRMGGDGKTILMKEISRIVMEKKLFDEVVTSTISQTPDIKTIQGQLFDKLRLKFDQETDEGRPLCYIKG

Homology

[Close]

BLAST of Bhi06G000805 vs. TAIR10
Match: AT5G43730.1 (Disease resistance protein (CC-NBS-LRR class) family)

HSP 1 Score: 41.6 bits (96), Expect = 3.0e-04
Identity = 23/74 (31.08%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 10  ALMDDSVSRIEVYRMGGDGKTILMKEISRIVME-KKLFDEVVTSTISQTPDIKTIQGQLF 69
           +L+DD +  + +Y MGG GKT L++ ++   +E +  FD V+   +S+   ++ IQ Q+ 
Sbjct: 166 SLIDDEIRTLGLYGMGGIGKTTLLESLNNKFVELESEFDVVIWVVVSKDFQLEGIQDQIL 225

Query: 70  DKLR--LKFDQETD 81
            +LR   ++++ET+
Sbjct: 226 GRLRPDKEWERETE 239

[Close]

BLAST of Bhi06G000805 vs. TAIR10
Match: AT5G43740.1 (Disease resistance protein (CC-NBS-LRR class) family)

HSP 1 Score: 40.8 bits (94), Expect = 5.2e-04
Identity = 23/74 (31.08%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 10  ALMDDSVSRIEVYRMGGDGKTILMKEISRIVME-KKLFDEVVTSTISQTPDIKTIQGQLF 69
           +LM+D +  + +Y MGG GKT L++ ++   +E +  FD V+   +S+    + IQ Q+ 
Sbjct: 165 SLMNDEIGTLGLYGMGGVGKTTLLESLNNKFVELESEFDVVIWVVVSKDFQFEGIQDQIL 224

Query: 70  DKLR--LKFDQETD 81
            +LR   ++++ET+
Sbjct: 225 GRLRSDKEWERETE 238

[Close]

BLAST of Bhi06G000805 vs. TAIR10
Match: AT4G10780.1 (LRR and NB-ARC domains-containing disease resistance protein)

HSP 1 Score: 40.0 bits (92), Expect = 8.8e-04
Identity = 25/72 (34.72%), Postives = 38/72 (52.78%), Query Frame = 0


Query: 1   KTYYRRNHGALMDDSVSRIEVYRMGGDGKTILMKEISRIVME-KKLFDEVVTSTISQTPD 60
           +T ++R    LMDD V  + +Y MGG GKT L+ +I   + + K   D V+   +S    
Sbjct: 158 ETIFQRAWNRLMDDGVGTMGLYGMGGVGKTTLLTQIHNTLHDTKNGVDIVIWVVVSSDLQ 217

Query: 61  IKTIQGQLFDKL 72
           I  IQ  + +KL
Sbjct: 218 IHKIQEDIGEKL 229

[Close]

BLAST of Bhi06G000805 vs. TrEMBL
Match: tr|A0A1S3B439|A0A1S3B439_CUCME (probable disease resistance protein At4g27220 OS=Cucumis melo OX=3656 GN=LOC103485808 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.4e-24
Identity = 60/77 (77.92%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 9   GALMDDSVSRIEVYRMGGDGKTILMKEISRIVMEKKLFDEVVTSTISQTPDIKTIQGQLF 68
           GALMDD+V +I VY MGG GKT+L+KEIS++ ME+KLFDEVVTSTISQTPDIK IQGQL 
Sbjct: 164 GALMDDNVHKIGVYGMGGVGKTMLVKEISKLAMERKLFDEVVTSTISQTPDIKRIQGQLG 223

Query: 69  DKLRLKFDQETDEGRPL 86
           DKL LKFDQET+EGR L
Sbjct: 224 DKLGLKFDQETEEGRAL 240

[Close]

BLAST of Bhi06G000805 vs. TrEMBL
Match: tr|A0A0A0LN08|A0A0A0LN08_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G096930 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.3e-21
Identity = 52/76 (68.42%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 10  ALMDDSVSRIEVYRMGGDGKTILMKEISRIVMEKKLFDEVVTSTISQTPDIKTIQGQLFD 69
           ALMDD+V  I VY MGG GKT+L++EIS++ ME+KLFDEV+TST+SQTPD++ IQGQL D
Sbjct: 163 ALMDDNVHTIGVYGMGGVGKTMLVQEISKLAMEQKLFDEVITSTVSQTPDLRRIQGQLGD 222

Query: 70  KLRLKFDQETDEGRPL 86
           KL L+F+QET+EGR L
Sbjct: 223 KLGLRFEQETEEGRAL 238

[Close]

BLAST of Bhi06G000805 vs. TrEMBL
Match: tr|A0A0A0LMT4|A0A0A0LMT4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G403680 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.3e-19
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 10  ALMDDSVSRIEVYRMGGDGKTILMKEISRIVMEKKLFDEVVTSTISQTPDIKTIQGQLFD 69
           AL DD+V RI VY MGG GKT+L+KEI R ++E K FDEVVTSTISQTPD K+IQGQL D
Sbjct: 165 ALSDDNVHRIGVYGMGGVGKTMLVKEILRKIVESKSFDEVVTSTISQTPDFKSIQGQLAD 224

Query: 70  KLRLKFDQETDEGR 84
           KL LKF++ET EGR
Sbjct: 225 KLGLKFERETIEGR 238

[Close]

BLAST of Bhi06G000805 vs. TrEMBL
Match: tr|H9CZL3|H9CZL3_LUFAE (NBS-LRR resistance protein (Fragment) OS=Luffa aegyptiaca OX=3670 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.4e-18
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 24 MGGDGKTILMKEISRIVMEKKLFDEVVTSTISQTPDIKTIQGQLFDKLRLKFDQETDEGR 83
          MGG GKT+L+KEISRIVMEKKLFD+VVT T+SQTPD+K IQGQL DKL LKFDQET+EGR
Sbjct: 2  MGGLGKTMLVKEISRIVMEKKLFDQVVTLTVSQTPDLKRIQGQLGDKLGLKFDQETEEGR 61

Query: 84 PL 86
           L
Sbjct: 62 AL 63

[Close]

BLAST of Bhi06G000805 vs. TrEMBL
Match: tr|A0A1S4E0R8|A0A1S4E0R8_CUCME (probable disease resistance protein At1g63360 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495494 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 54/75 (72.00%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 10  ALMDDSVSRIEVYRMGGDGKTILMKEISRIVME-KKLFDEVVTSTISQTPDIKTIQGQLF 69
           AL +D+V RI V+ MGG GKT+L+KEI R + E KKLFDEVVT TISQTPD KTIQGQL 
Sbjct: 165 ALSEDNVHRIGVHGMGGVGKTMLVKEILRKIGESKKLFDEVVTCTISQTPDFKTIQGQLA 224

Query: 70  DKLRLKFDQETDEGR 84
           DKL LKF QET EGR
Sbjct: 225 DKLGLKFQQETIEGR 239

[Close]

BLAST of Bhi06G000805 vs. NCBI nr
Match: XP_008441731.1 (PREDICTED: probable disease resistance protein At4g27220 [Cucumis melo] >XP_008441732.1 PREDICTED: probable disease resistance protein At4g27220 [Cucumis melo] >XP_008441734.1 PREDICTED: probable disease resistance protein At4g27220 [Cucumis melo] >XP_016899499.1 PREDICTED: probable disease resistance protein At4g27220 [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 8.2e-24
Identity = 60/77 (77.92%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 9   GALMDDSVSRIEVYRMGGDGKTILMKEISRIVMEKKLFDEVVTSTISQTPDIKTIQGQLF 68
           GALMDD+V +I VY MGG GKT+L+KEIS++ ME+KLFDEVVTSTISQTPDIK IQGQL 
Sbjct: 164 GALMDDNVHKIGVYGMGGVGKTMLVKEISKLAMERKLFDEVVTSTISQTPDIKRIQGQLG 223

Query: 69  DKLRLKFDQETDEGRPL 86
           DKL LKFDQET+EGR L
Sbjct: 224 DKLGLKFDQETEEGRAL 240

[Close]

BLAST of Bhi06G000805 vs. NCBI nr
Match: KGN61356.1 (hypothetical protein Csa_2G096930 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 52/76 (68.42%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 10  ALMDDSVSRIEVYRMGGDGKTILMKEISRIVMEKKLFDEVVTSTISQTPDIKTIQGQLFD 69
           ALMDD+V  I VY MGG GKT+L++EIS++ ME+KLFDEV+TST+SQTPD++ IQGQL D
Sbjct: 163 ALMDDNVHTIGVYGMGGVGKTMLVQEISKLAMEQKLFDEVITSTVSQTPDLRRIQGQLGD 222

Query: 70  KLRLKFDQETDEGRPL 86
           KL L+F+QET+EGR L
Sbjct: 223 KLGLRFEQETEEGRAL 238

[Close]

BLAST of Bhi06G000805 vs. NCBI nr
Match: XP_011650138.1 (PREDICTED: probable disease resistance protein At4g27220 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 52/76 (68.42%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 10  ALMDDSVSRIEVYRMGGDGKTILMKEISRIVMEKKLFDEVVTSTISQTPDIKTIQGQLFD 69
           ALMDD+V  I VY MGG GKT+L++EIS++ ME+KLFDEV+TST+SQTPD++ IQGQL D
Sbjct: 163 ALMDDNVHTIGVYGMGGVGKTMLVQEISKLAMEQKLFDEVITSTVSQTPDLRRIQGQLGD 222

Query: 70  KLRLKFDQETDEGRPL 86
           KL L+F+QET+EGR L
Sbjct: 223 KLGLRFEQETEEGRAL 238

[Close]

BLAST of Bhi06G000805 vs. NCBI nr
Match: KGN63113.1 (hypothetical protein Csa_2G403680 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 8.0e-19
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 10  ALMDDSVSRIEVYRMGGDGKTILMKEISRIVMEKKLFDEVVTSTISQTPDIKTIQGQLFD 69
           AL DD+V RI VY MGG GKT+L+KEI R ++E K FDEVVTSTISQTPD K+IQGQL D
Sbjct: 165 ALSDDNVHRIGVYGMGGVGKTMLVKEILRKIVESKSFDEVVTSTISQTPDFKSIQGQLAD 224

Query: 70  KLRLKFDQETDEGR 84
           KL LKF++ET EGR
Sbjct: 225 KLGLKFERETIEGR 238

[Close]

BLAST of Bhi06G000805 vs. NCBI nr
Match: XP_011650207.1 (PREDICTED: probable disease resistance protein At4g27220 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 8.0e-19
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 10  ALMDDSVSRIEVYRMGGDGKTILMKEISRIVMEKKLFDEVVTSTISQTPDIKTIQGQLFD 69
           AL DD+V RI VY MGG GKT+L+KEI R ++E K FDEVVTSTISQTPD K+IQGQL D
Sbjct: 165 ALSDDNVHRIGVYGMGGVGKTMLVKEILRKIVESKSFDEVVTSTISQTPDFKSIQGQLAD 224

Query: 70  KLRLKFDQETDEGR 84
           KL LKF++ET EGR
Sbjct: 225 KLGLKFERETIEGR 238

The following BLAST results are available for this feature:

BLAST of Bhi06G000805 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi06G000805 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43730.1	3.0e-04	31.08	Disease resistance protein (CC-NBS-LRR class) family	[more]
AT5G43740.1	5.2e-04	31.08	Disease resistance protein (CC-NBS-LRR class) family	[more]
AT4G10780.1	8.8e-04	34.72	LRR and NB-ARC domains-containing disease resistance protein	[more]

BLAST of Bhi06G000805 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B439\|A0A1S3B439_CUCME	5.4e-24	77.92	probable disease resistance protein At4g27220 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A0A0LN08\|A0A0A0LN08_CUCSA	7.3e-21	68.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G096930 PE=3 SV=1	[more]
tr\|A0A0A0LMT4\|A0A0A0LMT4_CUCSA	5.3e-19	71.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G403680 PE=3 SV=1	[more]
tr\|H9CZL3\|H9CZL3_LUFAE	3.4e-18	80.65	NBS-LRR resistance protein (Fragment) OS=Luffa aegyptiaca OX=3670 PE=4 SV=1	[more]
tr\|A0A1S4E0R8\|A0A1S4E0R8_CUCME	1.7e-17	72.00	probable disease resistance protein At1g63360 isoform X1 OS=Cucumis melo OX=3656...	[more]

BLAST of Bhi06G000805 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441731.1	8.2e-24	77.92	PREDICTED: probable disease resistance protein At4g27220 [Cucumis melo] >XP_0084...	[more]
KGN61356.1	1.1e-20	68.42	hypothetical protein Csa_2G096930 [Cucumis sativus]	[more]
XP_011650138.1	1.1e-20	68.42	PREDICTED: probable disease resistance protein At4g27220 [Cucumis sativus]	[more]
KGN63113.1	8.0e-19	71.62	hypothetical protein Csa_2G403680 [Cucumis sativus]	[more]
XP_011650207.1	8.0e-19	71.62	PREDICTED: probable disease resistance protein At4g27220 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0043531	ADP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR002182	NB-ARC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0043531	ADP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000805	Bhi06M000805	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002182	NB-ARC	PFAM	PF00931	NB-ARC	coord: 11..77 e-value: 9.9E-7 score: 28.0
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 4..85 e-value: 6.9E-6 score: 27.6
None	No IPR available	PANTHER	PTHR44061	FAMILY NOT NAMED	coord: 10..83
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 13..79

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi06G000805	Cucumber (Gy14) v1	cgywgoB394
Bhi06G000805	Cucumber (Gy14) v2	cgybwgoB134
Bhi06G000805	Cucurbita maxima (Rimu)	cmawgoB0555
Bhi06G000805	Cucurbita moschata (Rifu)	cmowgoB0552
Bhi06G000805	Cucurbita moschata (Rifu)	cmowgoB0930
Bhi06G000805	Cucurbita pepo (Zucchini)	cpewgoB0117
Bhi06G000805	Cucurbita pepo (Zucchini)	cpewgoB0672
Bhi06G000805	Wild cucumber (PI 183967)	cpiwgoB140
Bhi06G000805	Cucumber (Chinese Long) v3	cucwgoB147
Bhi06G000805	Cucumber (Chinese Long) v2	cuwgoB140
Bhi06G000805	Bottle gourd (USVL1VR-Ls)	lsiwgoB111
Bhi06G000805	Melon (DHL92) v3.6.1	medwgoB458
Bhi06G000805	Melon (DHL92) v3.5.1	mewgoB455
Bhi06G000805	Watermelon (Charleston Gray)	wcgwgoB148
Bhi06G000805	Watermelon (Charleston Gray)	wcgwgoB155
Bhi06G000805	Watermelon (97103) v2	wgowmbB121
Bhi06G000805	Watermelon (97103) v2	wgowmbB125
Bhi06G000805	Watermelon (97103) v1	wgowmB143
Bhi06G000805	Watermelon (97103) v1	wgowmB151
Bhi06G000805	Silver-seed gourd	carwgoB0822