Bhi06G000734 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi06G000734
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr6 : 21520851 .. 21521162 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCGCCGGGCTTCATTCTTTCAACAGGACGCGGTTCAGAGTCTCTGGTCCTCCTCCCACTGCTGGAGCTTACGGTTTCCCATGTTCTACTTTACTCCCCGATGGGGGTTTCTTTCACCTTTCCCTCACGGTACTTACTTCACTATCGGTCACACAGGAGTATTTAGCCTTGCAAGGTGGTCCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTTCGGGTCAGAGCGTAAGCTAGGATTGCTTTCGGCTACTGGGACTCTCGCCAATCTTAGGGTGGCAGCACTCCACCGCTTCGCCTAG

mRNA sequence

ATGAGTCGCCGGGCTTCATTCTTTCAACAGGACGCGGTTCAGAGTCTCTGGTCCTCCTCCCACTGCTGGAGCTTACGGTTTCCCATGTTCTACTTTACTCCCCGATGGGGGTTTCTTTCACCTTTCCCTCACGGTACTTACTTCACTATCGGTCACACAGGAGTATTTAGCCTTGCAAGGTGGTCCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTTCGGGTCAGAGCGTAAGCTAGGATTGCTTTCGGCTACTGGGACTCTCGCCAATCTTAGGGTGGCAGCACTCCACCGCTTCGCCTAG

Coding sequence (CDS)

ATGAGTCGCCGGGCTTCATTCTTTCAACAGGACGCGGTTCAGAGTCTCTGGTCCTCCTCCCACTGCTGGAGCTTACGGTTTCCCATGTTCTACTTTACTCCCCGATGGGGGTTTCTTTCACCTTTCCCTCACGGTACTTACTTCACTATCGGTCACACAGGAGTATTTAGCCTTGCAAGGTGGTCCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTTCGGGTCAGAGCGTAAGCTAGGATTGCTTTCGGCTACTGGGACTCTCGCCAATCTTAGGGTGGCAGCACTCCACCGCTTCGCCTAG

Protein sequence

MSRRASFFQQDAVQSLWSSSHCWSLRFPMFYFTPRWGFLSPFPHGTYFTIGHTGVFSLARWSLADSHGIPRAPCYFGSERKLGLLSATGTLANLRVAALHRFA

Homology

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BLAST of Bhi06G000734 vs. TrEMBL
Match: tr|A0A2P5WKD6|A0A2P5WKD6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA29149 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.2e-08
Identity = 41/77 (53.25%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 1   MSRRASFFQQDAVQSLWSSSHCWSLRFPMFYFTPRWGFLSPFPHGTYFTIGHTGVFSLAR 60
           MSRR    QQ  VQS        SLRF + + +P  G L   P   YF IGH GVFSL +
Sbjct: 56  MSRRL-IVQQVRVQSPGLLPLLGSLRFHVLFHSPT-GVLFTLPSRYYFAIGHPGVFSLDK 115

Query: 61  WSLADSHGIPRAPCYFG 78
             LADSHGIPRAPCY G
Sbjct: 116 VVLADSHGIPRAPCYSG 130

[Close]

BLAST of Bhi06G000734 vs. TrEMBL
Match: tr|A0A2N9I1D1|A0A2N9I1D1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45726 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.9e-06
Identity = 37/70 (52.86%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 24  SLRFPMFYFTPRWGFLSPFPHGTYFTIGHTGVFSLARWSLADSHG--IPRAPCYFGSERK 83
           SLRF + + +P  G L   P   YFTIGH GVFSL RWSL    G  +P A    GSERK
Sbjct: 537 SLRFHVLFHSP-MGVLFTLPSRYYFTIGHPGVFSLTRWSLLIHTGFHVPHA-TRVGSERK 596

Query: 84  LGLLSATGTL 92
           L +LSATG +
Sbjct: 597 LVMLSATGVM 604

[Close]

BLAST of Bhi06G000734 vs. NCBI nr
Match: PPR91549.1 (hypothetical protein GOBAR_AA29149 [Gossypium barbadense])

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-07
Identity = 41/77 (53.25%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 1   MSRRASFFQQDAVQSLWSSSHCWSLRFPMFYFTPRWGFLSPFPHGTYFTIGHTGVFSLAR 60
           MSRR    QQ  VQS        SLRF + + +P  G L   P   YF IGH GVFSL +
Sbjct: 56  MSRRL-IVQQVRVQSPGLLPLLGSLRFHVLFHSPT-GVLFTLPSRYYFAIGHPGVFSLDK 115

Query: 61  WSLADSHGIPRAPCYFG 78
             LADSHGIPRAPCY G
Sbjct: 116 VVLADSHGIPRAPCYSG 130

The following BLAST results are available for this feature:

BLAST of Bhi06G000734 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi06G000734 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi06G000734 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5WKD6\|A0A2P5WKD6_GOSBA	8.2e-08	53.25	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA29149 PE=4 SV...	[more]
tr\|A0A2N9I1D1\|A0A2N9I1D1_FAGSY	5.9e-06	52.86	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45726 PE=4 SV=1	[more]

BLAST of Bhi06G000734 vs. NCBI nr


Match Name	E-value	Identity	Description
PPR91549.1	1.2e-07	53.25	hypothetical protein GOBAR_AA29149 [Gossypium barbadense]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000734	Bhi06M000734	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi06G000734	Cucurbita maxima (Rimu)	cmawgoB0191
Bhi06G000734	Cucurbita maxima (Rimu)	cmawgoB0919
Bhi06G000734	Cucurbita maxima (Rimu)	cmawgoB0931
Bhi06G000734	Cucurbita moschata (Rifu)	cmowgoB0173
Bhi06G000734	Cucurbita moschata (Rifu)	cmowgoB0930
Bhi06G000734	Cucurbita pepo (Zucchini)	cpewgoB1009
Bhi06G000734	Wild cucumber (PI 183967)	cpiwgoB470
Bhi06G000734	Cucumber (Chinese Long) v3	cucwgoB479
Bhi06G000734	Cucumber (Chinese Long) v2	cuwgoB465
Bhi06G000734	Bottle gourd (USVL1VR-Ls)	lsiwgoB208
Bhi06G000734	Melon (DHL92) v3.6.1	medwgoB032
Bhi06G000734	Melon (DHL92) v3.5.1	mewgoB035
Bhi06G000734	Watermelon (Charleston Gray)	wcgwgoB023
Bhi06G000734	Watermelon (97103) v2	wgowmbB158
Bhi06G000734	Watermelon (97103) v1	wgowmB121
Bhi06G000734	Cucumber (Gy14) v1	cgywgoB007
Bhi06G000734	Cucumber (Gy14) v2	cgybwgoB444