Bhi06G000722 (gene) Wax gourd

Overview
NameBhi06G000722
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionPhytochrome-interacting factor 3 family protein
Locationchr6 : 20880604 .. 20881420 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATCCATGAATGCACCTCACATTTACCCACCCATGGGTTTAGGAATAGGTATGCCAGACATGAATGGTGGTTGTCCTGGTTTTCACATGGTCCAAGTGCCATACATGCAAGGAATGCATTTCCCTGGCCCAGCTATTCCAGCTCAAACTGTAATGCATGGATTTCCAAGTTCTAACTTTCTGGTTCTTGGACTTCCTGGTCAAGGACTTCCCATGCAAATGCCACTTGGACCGATTTCACTGTTTTCTGGAGGACCTTTTATGACTAATTCCAGTGTGGCAGTATCTCCTGTGGAGAATTTTGGTTCAGCTGCAGCCTCTACCTCGAAAGATGCATCACCAAACATTAATTCACCCATGGTGCCACTGACGCTTCAATTACTCCAATTCTTAGACAGGTTTGCAGATATATATTTTAAACTTTTTAAGATGAAGTTCTTAGCATACTAGTCTTAAGCTTTTATCCATATGCGCAGGACCTATGTAATGTTTTAGTAGGATGGAGTTTTTATCATATAAACATTTTGTCTCTCAATTTTACTCCTGAAACTTATGTAGTTAAGTAATCTCTGGTGTCAATTCTTCCTTCCTTCTGGTAATAATAACTAGTAGATGACCAGCCGTTGGATGATCTTTGTTTGGCTTCATTATTTTCAGAGATTTCTGGTGAAAGGTTAGAACCCTCTACTGTTATTTCCTCTTCAGATCCTGGTTTGGCAACTTTCTCGCAGAACTTTCTAGCAAAAAGACTTCTTCGGCCATTGACTCTCACCAGAATAGTAATGCCAGTGAGGATTTCTCATCTTACCAGTAG

mRNA sequence

ATGCCATCCATGAATGCACCTCACATTTACCCACCCATGGGTTTAGGAATAGGTATGCCAGACATGAATGGTGGTTGTCCTGGTTTTCACATGGTCCAAGTGCCATACATGCAAGGAATGCATTTCCCTGGCCCAGCTATTCCAGCTCAAACTGTAATGCATGGATTTCCAAGTTCTAACTTTCTGGTTCTTGGACTTCCTGGTCAAGGACTTCCCATGCAAATGCCACTTGGACCGATTTCACTGTTTTCTGGAGGACCTTTTATGACTAATTCCAGTGTGGCAGTATCTCCTGTGGAGAATTTTGGTTCAGCTGCAGCCTCTACCTCGAAAGATGCATCACCAAACATTAATTCACCCATGGTGCCACTGACGCTTCAATTACTCCAATTCTTAGACAGATCCTGGTTTGGCAACTTTCTCGCAGAACTTTCTAGCAAAAAGACTTCTTCGGCCATTGACTCTCACCAGAATAGTAATGCCAGTGAGGATTTCTCATCTTACCAGTAG

Coding sequence (CDS)

ATGCCATCCATGAATGCACCTCACATTTACCCACCCATGGGTTTAGGAATAGGTATGCCAGACATGAATGGTGGTTGTCCTGGTTTTCACATGGTCCAAGTGCCATACATGCAAGGAATGCATTTCCCTGGCCCAGCTATTCCAGCTCAAACTGTAATGCATGGATTTCCAAGTTCTAACTTTCTGGTTCTTGGACTTCCTGGTCAAGGACTTCCCATGCAAATGCCACTTGGACCGATTTCACTGTTTTCTGGAGGACCTTTTATGACTAATTCCAGTGTGGCAGTATCTCCTGTGGAGAATTTTGGTTCAGCTGCAGCCTCTACCTCGAAAGATGCATCACCAAACATTAATTCACCCATGGTGCCACTGACGCTTCAATTACTCCAATTCTTAGACAGATCCTGGTTTGGCAACTTTCTCGCAGAACTTTCTAGCAAAAAGACTTCTTCGGCCATTGACTCTCACCAGAATAGTAATGCCAGTGAGGATTTCTCATCTTACCAGTAG

Protein sequence

MPSMNAPHIYPPMGLGIGMPDMNGGCPGFHMVQVPYMQGMHFPGPAIPAQTVMHGFPSSNFLVLGLPGQGLPMQMPLGPISLFSGGPFMTNSSVAVSPVENFGSAAASTSKDASPNINSPMVPLTLQLLQFLDRSWFGNFLAELSSKKTSSAIDSHQNSNASEDFSSYQ
Homology
[Close]
BLAST of Bhi06G000722 vs. TrEMBL
Match: tr|A0A0A0LH16|A0A0A0LH16_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035330 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.5e-46
Identity = 97/127 (76.38%), Postives = 108/127 (85.04%), Query Frame = 0 

Query: 1   MPSMNAPHIYPPMGL----GIGMPDMNGGCPGFHMVQVPYMQGMHFPGPAIPAQTVMHGF 60
           M  MN PHIYPPMG+    GIGMPDMNGG P   MVQVP+MQGMHFPGP++PAQTVMHG 
Sbjct: 523 MAPMNTPHIYPPMGIGMGYGIGMPDMNGGIP---MVQVPHMQGMHFPGPSMPAQTVMHGL 582

Query: 61  PSSNFLVLGLPGQGLPMQMPLGPISLFSGGPFMTNSSVAVSPVENFGSAAASTSKDASPN 120
           PSSNF VLGLPGQGLPM MP GP++ FSGGPF+TNSS+AV+PV+NFGS AA +SKDASPN
Sbjct: 583 PSSNFQVLGLPGQGLPMPMPRGPVAPFSGGPFVTNSSMAVAPVDNFGSTAACSSKDASPN 642

Query: 121 INSPMVP 124
           INSPM P
Sbjct: 643 INSPMGP 646

[Close]
BLAST of Bhi06G000722 vs. TrEMBL
Match: tr|A0A1S3BWE9|A0A1S3BWE9_CUCME (transcription factor PIF3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493865 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.4e-41
Identity = 87/111 (78.38%), Postives = 97/111 (87.39%), Query Frame = 0 

Query: 13  MGLGIGMPDMNGGCPGFHMVQVPYMQGMHFPGPAIPAQTVMHGFPSSNFLVLGLPGQGLP 72
           MG GIGMPDMNGG P   MV VP+MQGMHFPGP++PAQTVMHG PSSNF VLGLPGQGLP
Sbjct: 561 MGFGIGMPDMNGGIP---MVPVPHMQGMHFPGPSMPAQTVMHGLPSSNFQVLGLPGQGLP 620

Query: 73  MQMPLGPISLFSGGPFMTNSSVAVSPVENFGSAAASTSKDASPNINSPMVP 124
           M MP GP++ FSGGPF+TNSS+AV+PV+NFGS AA +SKD SPNINSPMVP
Sbjct: 621 MPMPRGPVAPFSGGPFVTNSSMAVAPVDNFGSTAACSSKDTSPNINSPMVP 668

[Close]
BLAST of Bhi06G000722 vs. TrEMBL
Match: tr|A0A1S3BW30|A0A1S3BW30_CUCME (transcription factor PIF3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493865 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.4e-41
Identity = 87/111 (78.38%), Postives = 97/111 (87.39%), Query Frame = 0 

Query: 13  MGLGIGMPDMNGGCPGFHMVQVPYMQGMHFPGPAIPAQTVMHGFPSSNFLVLGLPGQGLP 72
           MG GIGMPDMNGG P   MV VP+MQGMHFPGP++PAQTVMHG PSSNF VLGLPGQGLP
Sbjct: 539 MGFGIGMPDMNGGIP---MVPVPHMQGMHFPGPSMPAQTVMHGLPSSNFQVLGLPGQGLP 598

Query: 73  MQMPLGPISLFSGGPFMTNSSVAVSPVENFGSAAASTSKDASPNINSPMVP 124
           M MP GP++ FSGGPF+TNSS+AV+PV+NFGS AA +SKD SPNINSPMVP
Sbjct: 599 MPMPRGPVAPFSGGPFVTNSSMAVAPVDNFGSTAACSSKDTSPNINSPMVP 646

[Close]
BLAST of Bhi06G000722 vs. TrEMBL
Match: tr|A0A2P4IAP8|A0A2P4IAP8_QUESU (Transcription factor pif3 OS=Quercus suber OX=58331 GN=CFP56_72903 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.4e-19
Identity = 63/143 (44.06%), Postives = 76/143 (53.15%), Query Frame = 0 

Query: 4   MNAPHI--YPPMG--------------LGIGMPDMNGGCPGFHMVQVPYMQGMHFPGPAI 63
           M+APH+  + PMG                    DMN G  G+ M+QVP MQG HFP P +
Sbjct: 554 MSAPHMAHFSPMGXXXXXXXXXXXXXXXXXXXXDMNVGPSGYPMIQVPPMQGAHFPSPPL 613

Query: 64  PAQTVMHGFPSSNFLVLGLPGQGLPMQMPLGPISLFSGGPFM-----TNSSVAVSPVENF 123
              T MHG   SN  + GLPGQGLPM MP  P+   SGGP M      N+   V PVEN 
Sbjct: 614 SGHTAMHGMAGSNLQMFGLPGQGLPMPMPRAPLIPLSGGPVMKSATGLNACGVVGPVENV 673

Query: 124 GSAAASTSKDASPNINSPMVPLT 126
            SA AS+SKD   N+NS  + +T
Sbjct: 674 DSAPASSSKDPMQNVNSQAMQIT 696

[Close]
BLAST of Bhi06G000722 vs. TrEMBL
Match: tr|G1EAC1|G1EAC1_POPBA (Phytochrome-interacting factor 3.1 (Fragment) OS=Populus balsamifera OX=73824 GN=PIF3.1 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.6e-19
Identity = 61/135 (45.19%), Postives = 78/135 (57.78%), Query Frame = 0 

Query: 1   MPSMNAPHI--YPPMGLG------IGMPDMNGGCPGFHMVQVPYMQGMHFPGPAIPAQTV 60
           MP M+A H+  + PMG+G      +GMPDMNGG  G  M QVP M G HFPG  +   + 
Sbjct: 394 MPHMHAAHMGQFLPMGVGXXXXFRMGMPDMNGGYSGCPMYQVPPMHGAHFPGSPMSGPSA 453

Query: 61  MHGFPSSNFLVLGLPGQGLPMQMPLGPISLFSGGP-----FMTNSSVAVSPVENFGSAAA 120
           +HG   S+  + GL GQGLPM  P  P+   SGGP        N+   V P++N  SA A
Sbjct: 454 LHGMGGSSLQMFGLSGQGLPMSFPRAPLMPMSGGPPPKTNREPNACGVVGPMDNLDSATA 513

Query: 121 STSKDASPNINSPMV 123
           S+SKDA  NINS ++
Sbjct: 514 SSSKDAIQNINSQVM 528

[Close]
BLAST of Bhi06G000722 vs. NCBI nr
Match: XP_011648886.1 (PREDICTED: transcription factor PIF3 isoform X2 [Cucumis sativus] >XP_011648887.1 PREDICTED: transcription factor PIF3 isoform X2 [Cucumis sativus] >KGN61033.1 hypothetical protein Csa_2G035330 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 2.2e-46
Identity = 97/127 (76.38%), Postives = 108/127 (85.04%), Query Frame = 0 

Query: 1   MPSMNAPHIYPPMGL----GIGMPDMNGGCPGFHMVQVPYMQGMHFPGPAIPAQTVMHGF 60
           M  MN PHIYPPMG+    GIGMPDMNGG P   MVQVP+MQGMHFPGP++PAQTVMHG 
Sbjct: 523 MAPMNTPHIYPPMGIGMGYGIGMPDMNGGIP---MVQVPHMQGMHFPGPSMPAQTVMHGL 582

Query: 61  PSSNFLVLGLPGQGLPMQMPLGPISLFSGGPFMTNSSVAVSPVENFGSAAASTSKDASPN 120
           PSSNF VLGLPGQGLPM MP GP++ FSGGPF+TNSS+AV+PV+NFGS AA +SKDASPN
Sbjct: 583 PSSNFQVLGLPGQGLPMPMPRGPVAPFSGGPFVTNSSMAVAPVDNFGSTAACSSKDASPN 642

Query: 121 INSPMVP 124
           INSPM P
Sbjct: 643 INSPMGP 646

[Close]
BLAST of Bhi06G000722 vs. NCBI nr
Match: XP_011648884.1 (PREDICTED: transcription factor PIF3 isoform X1 [Cucumis sativus] >XP_011648885.1 PREDICTED: transcription factor PIF3 isoform X1 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 2.2e-46
Identity = 97/127 (76.38%), Postives = 108/127 (85.04%), Query Frame = 0 

Query: 1   MPSMNAPHIYPPMGL----GIGMPDMNGGCPGFHMVQVPYMQGMHFPGPAIPAQTVMHGF 60
           M  MN PHIYPPMG+    GIGMPDMNGG P   MVQVP+MQGMHFPGP++PAQTVMHG 
Sbjct: 545 MAPMNTPHIYPPMGIGMGYGIGMPDMNGGIP---MVQVPHMQGMHFPGPSMPAQTVMHGL 604

Query: 61  PSSNFLVLGLPGQGLPMQMPLGPISLFSGGPFMTNSSVAVSPVENFGSAAASTSKDASPN 120
           PSSNF VLGLPGQGLPM MP GP++ FSGGPF+TNSS+AV+PV+NFGS AA +SKDASPN
Sbjct: 605 PSSNFQVLGLPGQGLPMPMPRGPVAPFSGGPFVTNSSMAVAPVDNFGSTAACSSKDASPN 664

Query: 121 INSPMVP 124
           INSPM P
Sbjct: 665 INSPMGP 668

[Close]
BLAST of Bhi06G000722 vs. NCBI nr
Match: XP_022938113.1 (transcription factor PIF3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 183.0 bits (463), Expect = 8.7e-43
Identity = 89/128 (69.53%), Postives = 104/128 (81.25%), Query Frame = 0 

Query: 1   MPSMNAPHIYPPMGLGIG------MPDMNGGCPGFHMVQVPYMQGMHFPGPAIPAQTVMH 60
           +P MNAPHIY PMG+GIG      MPDMNGG PG+ M Q+P++QG HFP P+IPAQTVMH
Sbjct: 423 LPPMNAPHIYSPMGVGIGMGYGIAMPDMNGGSPGYPMAQMPHVQGTHFPSPSIPAQTVMH 482

Query: 61  GFPSSNFLVLGLPGQGLPMQMPLGPISLFSGGPFMTNSSVAVSPVENFGSAAASTSKDAS 120
           G P SNF VLGLPGQGLP+ MP GPI+ F GGPFMTNSSVAV+PVE+FG AAA +SKD+S
Sbjct: 483 GMPGSNFHVLGLPGQGLPLSMPHGPIAPFRGGPFMTNSSVAVAPVESFGLAAACSSKDSS 542

Query: 121 PNINSPMV 123
           P +N+P V
Sbjct: 543 PKMNAPTV 550

[Close]
BLAST of Bhi06G000722 vs. NCBI nr
Match: XP_022938111.1 (transcription factor PIF3-like isoform X1 [Cucurbita moschata] >XP_022938112.1 transcription factor PIF3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 183.0 bits (463), Expect = 8.7e-43
Identity = 89/128 (69.53%), Postives = 104/128 (81.25%), Query Frame = 0 

Query: 1   MPSMNAPHIYPPMGLGIG------MPDMNGGCPGFHMVQVPYMQGMHFPGPAIPAQTVMH 60
           +P MNAPHIY PMG+GIG      MPDMNGG PG+ M Q+P++QG HFP P+IPAQTVMH
Sbjct: 451 LPPMNAPHIYSPMGVGIGMGYGIAMPDMNGGSPGYPMAQMPHVQGTHFPSPSIPAQTVMH 510

Query: 61  GFPSSNFLVLGLPGQGLPMQMPLGPISLFSGGPFMTNSSVAVSPVENFGSAAASTSKDAS 120
           G P SNF VLGLPGQGLP+ MP GPI+ F GGPFMTNSSVAV+PVE+FG AAA +SKD+S
Sbjct: 511 GMPGSNFHVLGLPGQGLPLSMPHGPIAPFRGGPFMTNSSVAVAPVESFGLAAACSSKDSS 570

Query: 121 PNINSPMV 123
           P +N+P V
Sbjct: 571 PKMNAPTV 578

[Close]
BLAST of Bhi06G000722 vs. NCBI nr
Match: XP_022969619.1 (transcription factor PIF3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 179.5 bits (454), Expect = 9.6e-42
Identity = 87/128 (67.97%), Postives = 101/128 (78.91%), Query Frame = 0 

Query: 1   MPSMNAPHIYPPMGLGIG------MPDMNGGCPGFHMVQVPYMQGMHFPGPAIPAQTVMH 60
           MP MNAPHIY PMG+GIG      MPDMNGG PG+ M Q+P++QG HFP P+IPAQT+MH
Sbjct: 422 MPPMNAPHIYSPMGVGIGMGFGIAMPDMNGGSPGYPMAQMPHLQGTHFPSPSIPAQTIMH 481

Query: 61  GFPSSNFLVLGLPGQGLPMQMPLGPISLFSGGPFMTNSSVAVSPVENFGSAAASTSKDAS 120
           G P SNF VLG PGQGLP+ MP GPI+ F GGPFMTNSSVAV+PVE+F  AAA +SKD+ 
Sbjct: 482 GMPGSNFHVLGFPGQGLPVSMPRGPIAPFHGGPFMTNSSVAVAPVESFSLAAACSSKDSP 541

Query: 121 PNINSPMV 123
           P +NSP V
Sbjct: 542 PKMNSPTV 549

The following BLAST results are available for this feature:
BLAST of Bhi06G000722 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi06G000722 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi06G000722 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LH16|A0A0A0LH16_CUCSA1.5e-4676.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035330 PE=4 SV=1[more]
tr|A0A1S3BWE9|A0A1S3BWE9_CUCME1.4e-4178.38transcription factor PIF3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493865 PE=... [more]
tr|A0A1S3BW30|A0A1S3BW30_CUCME1.4e-4178.38transcription factor PIF3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493865 PE=... [more]
tr|A0A2P4IAP8|A0A2P4IAP8_QUESU3.4e-1944.06Transcription factor pif3 OS=Quercus suber OX=58331 GN=CFP56_72903 PE=4 SV=1[more]
tr|G1EAC1|G1EAC1_POPBA7.6e-1945.19Phytochrome-interacting factor 3.1 (Fragment) OS=Populus balsamifera OX=73824 GN... [more]
BLAST of Bhi06G000722 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011648886.12.2e-4676.38PREDICTED: transcription factor PIF3 isoform X2 [Cucumis sativus] >XP_011648887.... [more]
XP_011648884.12.2e-4676.38PREDICTED: transcription factor PIF3 isoform X1 [Cucumis sativus] >XP_011648885.... [more]
XP_022938113.18.7e-4369.53transcription factor PIF3-like isoform X2 [Cucurbita moschata][more]
XP_022938111.18.7e-4369.53transcription factor PIF3-like isoform X1 [Cucurbita moschata] >XP_022938112.1 t... [more]
XP_022969619.19.6e-4267.97transcription factor PIF3-like isoform X2 [Cucurbita maxima][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M000722Bhi06M000722mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi06G000722Cucumber (Gy14) v1cgywgoB007
Bhi06G000722Cucumber (Gy14) v2cgybwgoB444
Bhi06G000722Cucurbita maxima (Rimu)cmawgoB0191
Bhi06G000722Cucurbita maxima (Rimu)cmawgoB0931
Bhi06G000722Cucurbita moschata (Rifu)cmowgoB0173
Bhi06G000722Cucurbita moschata (Rifu)cmowgoB0930
Bhi06G000722Cucurbita pepo (Zucchini)cpewgoB1009
Bhi06G000722Wild cucumber (PI 183967)cpiwgoB470
Bhi06G000722Cucumber (Chinese Long) v3cucwgoB479
Bhi06G000722Cucumber (Chinese Long) v2cuwgoB465
Bhi06G000722Bottle gourd (USVL1VR-Ls)lsiwgoB208
Bhi06G000722Melon (DHL92) v3.6.1medwgoB032
Bhi06G000722Melon (DHL92) v3.5.1mewgoB035
Bhi06G000722Watermelon (Charleston Gray)wcgwgoB023
Bhi06G000722Watermelon (97103) v2wgowmbB158
Bhi06G000722Watermelon (97103) v1wgowmB121
Bhi06G000722Silver-seed gourdcarwgoB0402