Bhi06G000485 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi06G000485
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Photosystem II protein D1
Location	chr6 : 13041019 .. 13041306 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACTCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGTTATGCATGGTTCCTTGGTACTGACGTGA

mRNA sequence

ATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACTCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGTTATGCATGGTTCCTTGGTACTGACGTGA

Coding sequence (CDS)

ATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACTCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGTTATGCATGGTTCCTTGGTACTGACGTGA

Protein sequence

MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLVLT

Homology

[Close]

BLAST of Bhi06G000485 vs. Swiss-Prot
Match: sp|Q3V554|PSBA_ACOCL (Photosystem II protein D1 OS=Acorus calamus OX=4465 GN=psbA PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 9.4e-46
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLV 94
           QAEHNILMH FHMLGVAGVFGGSLFS MHGSLV
Sbjct: 187 QAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLV 219

[Close]

BLAST of Bhi06G000485 vs. Swiss-Prot
Match: sp|A4QJ96|PSBA_AETCO (Photosystem II protein D1 OS=Aethionema cordifolium OX=434059 GN=psbA PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 9.4e-46
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLV 94
           QAEHNILMH FHMLGVAGVFGGSLFS MHGSLV
Sbjct: 187 QAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLV 219

[Close]

BLAST of Bhi06G000485 vs. Swiss-Prot
Match: sp|A4QJI0|PSBA_AETGR (Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 9.4e-46
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLV 94
           QAEHNILMH FHMLGVAGVFGGSLFS MHGSLV
Sbjct: 187 QAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLV 219

[Close]

BLAST of Bhi06G000485 vs. Swiss-Prot
Match: sp|A1E9Y8|PSBA_AGRST (Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 9.4e-46
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLV 94
           QAEHNILMH FHMLGVAGVFGGSLFS MHGSLV
Sbjct: 187 QAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLV 219

[Close]

BLAST of Bhi06G000485 vs. Swiss-Prot
Match: sp|P02956|PSBA_AMAHY (Photosystem II protein D1 OS=Amaranthus hybridus OX=3565 GN=psbA PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 9.4e-46
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLV 94
           QAEHNILMH FHMLGVAGVFGGSLFS MHGSLV
Sbjct: 187 QAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLV 219

[Close]

BLAST of Bhi06G000485 vs. TAIR10
Match: ATCG00020.1 (photosystem II reaction center protein A)

HSP 1 Score: 183.7 bits (465), Expect = 5.2e-47
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLV 94
           QAEHNILMH FHMLGVAGVFGGSLFS MHGSLV
Sbjct: 187 QAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLV 219

[Close]

BLAST of Bhi06G000485 vs. TAIR10
Match: ATCG00270.1 (photosystem II reaction center protein D)

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-17
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 1   MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 60
           M R++EL+  + +RP+ A+A+S P+AV  +VFLIYP+GQ  +      G++  F F++ F
Sbjct: 127 MLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFF 186

Query: 61  QAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLV 94
           Q  HN  ++ FHM+GVAGV G +L   +HG+ V
Sbjct: 187 QGFHNWTLNPFHMMGVAGVLGAALLCAIHGATV 219

[Close]

BLAST of Bhi06G000485 vs. TrEMBL
Match: tr|A0A287Q7T9|A0A287Q7T9_HORVV (Photosystem II protein D1 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.5e-44
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1   MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLV 94
           QAEHNILMH FHMLGVAGVFGGSLFSVMHGSLV
Sbjct: 187 QAEHNILMHPFHMLGVAGVFGGSLFSVMHGSLV 219

[Close]

BLAST of Bhi06G000485 vs. TrEMBL
Match: tr|I7HUV1|I7HUV1_9EUKA (Photosystem II protein D1 (Fragment) OS=uncultured marine eukaryote OX=203449 GN=psbA PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.9e-43
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 61  MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 120

Query: 61  QAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLV 94
           QAEHNILMH FHMLGVAGVFGGSLFS MHGSLV
Sbjct: 121 QAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLV 153

[Close]

BLAST of Bhi06G000485 vs. TrEMBL
Match: tr|I7HUW3|I7HUW3_9EUKA (Photosystem II protein D1 (Fragment) OS=uncultured marine eukaryote OX=203449 GN=psbA PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.9e-43
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 61  MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 120

Query: 61  QAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLV 94
           QAEHNILMH FHMLGVAGVFGGSLFS MHGSLV
Sbjct: 121 QAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLV 153

[Close]

BLAST of Bhi06G000485 vs. TrEMBL
Match: tr|D6BKL1|D6BKL1_9EUKA (Photosystem II protein D1 (Fragment) OS=uncultured eukaryote OX=100272 GN=psbA PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.9e-43
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 34  MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 93

Query: 61  QAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLV 94
           QAEHNILMH FHMLGVAGVFGGSLFS MHGSLV
Sbjct: 94  QAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLV 126

[Close]

BLAST of Bhi06G000485 vs. TrEMBL
Match: tr|D6BL14|D6BL14_9EUKA (Photosystem II protein D1 (Fragment) OS=uncultured eukaryote OX=100272 GN=psbA PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.9e-43
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 34  MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 93

Query: 61  QAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLV 94
           QAEHNILMH FHMLGVAGVFGGSLFS MHGSLV
Sbjct: 94  QAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLV 126

[Close]

BLAST of Bhi06G000485 vs. NCBI nr
Match: AAD34735.1 (photosystem Q (B) protein precursor, partial (chloroplast) [Poa annua])

HSP 1 Score: 183.7 bits (465), Expect = 2.9e-43
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 82  MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 141

Query: 61  QAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLV 94
           QAEHNILMH FHMLGVAGVFGGSLFS MHGSLV
Sbjct: 142 QAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLV 174

[Close]

BLAST of Bhi06G000485 vs. NCBI nr
Match: AAN77550.1 (PsbA, partial (plastid) [uncultured prasinophyte])

HSP 1 Score: 183.7 bits (465), Expect = 2.9e-43
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 70  MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 129

Query: 61  QAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLV 94
           QAEHNILMH FHMLGVAGVFGGSLFS MHGSLV
Sbjct: 130 QAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLV 162

[Close]

BLAST of Bhi06G000485 vs. NCBI nr
Match: AAK53381.1 (herbicide binding protein D1, partial (chloroplast) [Lolium perenne])

HSP 1 Score: 183.7 bits (465), Expect = 2.9e-43
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 72  MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 131

Query: 61  QAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLV 94
           QAEHNILMH FHMLGVAGVFGGSLFS MHGSLV
Sbjct: 132 QAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLV 164

[Close]

BLAST of Bhi06G000485 vs. NCBI nr
Match: AAN77560.1 (PsbA, partial (plastid) [uncultured prasinophyte])

HSP 1 Score: 183.7 bits (465), Expect = 2.9e-43
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 70  MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 129

Query: 61  QAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLV 94
           QAEHNILMH FHMLGVAGVFGGSLFS MHGSLV
Sbjct: 130 QAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLV 162

[Close]

BLAST of Bhi06G000485 vs. NCBI nr
Match: AAK50366.1 (Q(B) polypeptide, partial (chloroplast) [Medicago sativa])

HSP 1 Score: 183.7 bits (465), Expect = 2.9e-43
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 114 MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 173

Query: 61  QAEHNILMHSFHMLGVAGVFGGSLFSVMHGSLV 94
           QAEHNILMH FHMLGVAGVFGGSLFS MHGSLV
Sbjct: 174 QAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLV 206

The following BLAST results are available for this feature:

BLAST of Bhi06G000485 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q3V554\|PSBA_ACOCL	9.4e-46	96.77	Photosystem II protein D1 OS=Acorus calamus OX=4465 GN=psbA PE=3 SV=1	[more]
sp\|A4QJ96\|PSBA_AETCO	9.4e-46	96.77	Photosystem II protein D1 OS=Aethionema cordifolium OX=434059 GN=psbA PE=3 SV=1	[more]
sp\|A4QJI0\|PSBA_AETGR	9.4e-46	96.77	Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1	[more]
sp\|A1E9Y8\|PSBA_AGRST	9.4e-46	96.77	Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1	[more]
sp\|P02956\|PSBA_AMAHY	9.4e-46	96.77	Photosystem II protein D1 OS=Amaranthus hybridus OX=3565 GN=psbA PE=3 SV=1	[more]

BLAST of Bhi06G000485 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00020.1	5.2e-47	96.77	photosystem II reaction center protein A	[more]
ATCG00270.1	1.9e-17	43.01	photosystem II reaction center protein D	[more]

BLAST of Bhi06G000485 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A287Q7T9\|A0A287Q7T9_HORVV	6.5e-44	97.85	Photosystem II protein D1 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1	[more]
tr\|I7HUV1\|I7HUV1_9EUKA	1.9e-43	96.77	Photosystem II protein D1 (Fragment) OS=uncultured marine eukaryote OX=203449 GN...	[more]
tr\|I7HUW3\|I7HUW3_9EUKA	1.9e-43	96.77	Photosystem II protein D1 (Fragment) OS=uncultured marine eukaryote OX=203449 GN...	[more]
tr\|D6BKL1\|D6BKL1_9EUKA	1.9e-43	96.77	Photosystem II protein D1 (Fragment) OS=uncultured eukaryote OX=100272 GN=psbA P...	[more]
tr\|D6BL14\|D6BL14_9EUKA	1.9e-43	96.77	Photosystem II protein D1 (Fragment) OS=uncultured eukaryote OX=100272 GN=psbA P...	[more]

BLAST of Bhi06G000485 vs. NCBI nr


Match Name	E-value	Identity	Description
AAD34735.1	2.9e-43	96.77	photosystem Q (B) protein precursor, partial (chloroplast) [Poa annua]	[more]
AAN77550.1	2.9e-43	96.77	PsbA, partial (plastid) [uncultured prasinophyte]	[more]
AAK53381.1	2.9e-43	96.77	herbicide binding protein D1, partial (chloroplast) [Lolium perenne]	[more]
AAN77560.1	2.9e-43	96.77	PsbA, partial (plastid) [uncultured prasinophyte]	[more]
AAK50366.1	2.9e-43	96.77	Q(B) polypeptide, partial (chloroplast) [Medicago sativa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009772	photosynthetic electron transport in photosystem II
GO:0019684	photosynthesis, light reaction

Vocabulary: **Molecular Function**
Term	Definition
GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036854	Photo_II_D1/D2_sf
IPR000484	Photo_RC_L/M

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009635	response to herbicide
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000485	Bhi06M000485	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000484	Photosynthetic reaction centre, L/M	PRINTS	PR00256	REACTNCENTRE	coord: 16..38 score: 18.63 coord: 71..95 score: 36.86
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 1..94 e-value: 1.2E-40 score: 139.3
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	FAMILY NOT NAMED	coord: 1..93
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	G3DSA:1.20.85.10		coord: 15..95 e-value: 2.7E-23 score: 84.5
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	SSF81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 1..94
None	No IPR available	PANTHER	PTHR33149:SF11	PHOTOSYSTEM II PROTEIN D1	coord: 1..93

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi06G000485	Melon (DHL92) v3.5.1	mewgoB022
Bhi06G000485	Wax gourd	wgowgoB001
Bhi06G000485	Cucumber (Gy14) v1	cgywgoB388
Bhi06G000485	Cucumber (Gy14) v1	cgywgoB405
Bhi06G000485	Cucumber (Gy14) v1	cgywgoB679
Bhi06G000485	Cucumber (Gy14) v2	cgybwgoB008
Bhi06G000485	Cucumber (Gy14) v2	cgybwgoB255
Bhi06G000485	Cucumber (Gy14) v2	cgybwgoB448
Bhi06G000485	Cucurbita maxima (Rimu)	cmawgoB0054
Bhi06G000485	Cucurbita maxima (Rimu)	cmawgoB0100
Bhi06G000485	Cucurbita maxima (Rimu)	cmawgoB0314
Bhi06G000485	Cucurbita maxima (Rimu)	cmawgoB0380
Bhi06G000485	Cucurbita maxima (Rimu)	cmawgoB0839
Bhi06G000485	Cucurbita moschata (Rifu)	cmowgoB0048
Bhi06G000485	Cucurbita moschata (Rifu)	cmowgoB0097
Bhi06G000485	Cucurbita moschata (Rifu)	cmowgoB0302
Bhi06G000485	Cucurbita moschata (Rifu)	cmowgoB0374
Bhi06G000485	Cucurbita moschata (Rifu)	cmowgoB0836
Bhi06G000485	Cucurbita pepo (Zucchini)	cpewgoB0239
Bhi06G000485	Cucurbita pepo (Zucchini)	cpewgoB0502
Bhi06G000485	Cucurbita pepo (Zucchini)	cpewgoB0769
Bhi06G000485	Wild cucumber (PI 183967)	cpiwgoB009
Bhi06G000485	Wild cucumber (PI 183967)	cpiwgoB267
Bhi06G000485	Wild cucumber (PI 183967)	cpiwgoB474
Bhi06G000485	Cucumber (Chinese Long) v3	cucwgoB009
Bhi06G000485	Cucumber (Chinese Long) v3	cucwgoB270
Bhi06G000485	Cucumber (Chinese Long) v3	cucwgoB483
Bhi06G000485	Cucumber (Chinese Long) v2	cuwgoB007
Bhi06G000485	Cucumber (Chinese Long) v2	cuwgoB267
Bhi06G000485	Cucumber (Chinese Long) v2	cuwgoB471
Bhi06G000485	Bottle gourd (USVL1VR-Ls)	lsiwgoB207
Bhi06G000485	Bottle gourd (USVL1VR-Ls)	lsiwgoB313
Bhi06G000485	Bottle gourd (USVL1VR-Ls)	lsiwgoB476
Bhi06G000485	Melon (DHL92) v3.6.1	medwgoB020
Bhi06G000485	Melon (DHL92) v3.6.1	medwgoB392
Bhi06G000485	Melon (DHL92) v3.5.1	mewgoB391
Bhi06G000485	Watermelon (Charleston Gray)	wcgwgoB016
Bhi06G000485	Watermelon (Charleston Gray)	wcgwgoB111
Bhi06G000485	Watermelon (Charleston Gray)	wcgwgoB508
Bhi06G000485	Watermelon (97103) v2	wgowmbB114
Bhi06G000485	Watermelon (97103) v2	wgowmbB151
Bhi06G000485	Watermelon (97103) v1	wgowmB115
Bhi06G000485	Watermelon (97103) v1	wgowmB122
Bhi06G000485	Silver-seed gourd	carwgoB0339
Bhi06G000485	Silver-seed gourd	carwgoB0443
Bhi06G000485	Silver-seed gourd	carwgoB0451
Bhi06G000485	Silver-seed gourd	carwgoB0523
Bhi06G000485	Silver-seed gourd	carwgoB0801