Bhi06G000473 (gene) Wax gourd

NameBhi06G000473
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRNA polymerase II C-terminal domain phosphatase-like
Locationchr6 : 12829388 .. 12829645 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTACTGAAGACAGTTCGAAGTAAAGTTGTCATGGGATGCAAAGTCGTCTTCAGCAGGGTCTTTCCTATCAAATTTCAGGCTGACAACCATCATCTTTGGAAGATGGTAGAGCAGTTGGGAGGCACTTGCTCAATCGAAGTTGATCGATCTCTAACACACGTGGTCTCAACGGATGCTGGAACGGAGAAGTCGCATAGCGTTGGGTTTGAAAGACGAGACGTTTCTGGTCAATCCAGATGGTTTATCTCTTTACAGTAG

mRNA sequence

GTACTGAAGACAGTTCGAAGTAAAGTTGTCATGGGATGCAAAGTCGTCTTCAGCAGGGTCTTTCCTATCAAATTTCAGGCTGACAACCATCATCTTTGGAAGATGGTAGAGCAGTTGGGAGGCACTTGCTCAATCGAAGTTGATCGATCTCTAACACACGTGGTCTCAACGGATGCTGGAACGGAGAAGTCGCATAGCGTTGGGTTTGAAAGACGAGACGTTTCTGGTCAATCCAGATGGTTTATCTCTTTACAGTAG

Coding sequence (CDS)

GTACTGAAGACAGTTCGAAGTAAAGTTGTCATGGGATGCAAAGTCGTCTTCAGCAGGGTCTTTCCTATCAAATTTCAGGCTGACAACCATCATCTTTGGAAGATGGTAGAGCAGTTGGGAGGCACTTGCTCAATCGAAGTTGATCGATCTCTAACACACGTGGTCTCAACGGATGCTGGAACGGAGAAGTCGCATAGCGTTGGGTTTGAAAGACGAGACGTTTCTGGTCAATCCAGATGGTTTATCTCTTTACAGTAG

Protein sequence

VLKTVRSKVVMGCKVVFSRVFPIKFQADNHHLWKMVEQLGGTCSIEVDRSLTHVVSTDAGTEKSHSVGFERRDVSGQSRWFISLQ
BLAST of Bhi06G000473 vs. Swiss-Prot
Match: sp|Q00IB6|CPL4_ARATH (RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana OX=3702 GN=CPL4 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.8e-17
Identity = 40/74 (54.05%), Postives = 55/74 (74.32%), Query Frame = 0

Query: 1   VLKTVRSKVVMGCKVVFSRVFPIKFQADNHHLWKMVEQLGGTCSIEVDRSLTHVVSTDAG 60
           +LK VR +++ GCK+VFSRVFP K + ++H LWKM E+LG TC+ EVD S+THVV+ D G
Sbjct: 333 MLKQVRKEILKGCKIVFSRVFPTKAKPEDHPLWKMAEELGATCATEVDASVTHVVAMDVG 392

Query: 61  TEKSHSVGFERRDV 75
           TEK+     E++ V
Sbjct: 393 TEKARWAVREKKYV 406

BLAST of Bhi06G000473 vs. Swiss-Prot
Match: sp|Q8LL04|CPL3_ARATH (RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana OX=3702 GN=CPL3 PE=1 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 25/64 (39.06%), Postives = 42/64 (65.62%), Query Frame = 0

Query: 1    VLKTVRSKVVMGCKVVFSRVFPI-KFQADNHHLWKMVEQLGGTCSIEVDRSLTHVVSTDA 60
            +L + + K++ GC++VFSR+ P+ + +   H LW+  EQ G  C+ +VD  +THVV+   
Sbjct: 1142 ILASEQRKILAGCRIVFSRIIPVGEAKPHLHPLWQTAEQFGAVCTTQVDEHVTHVVTNSL 1201

Query: 61   GTEK 64
            GT+K
Sbjct: 1202 GTDK 1205

BLAST of Bhi06G000473 vs. TAIR10
Match: AT5G58003.1 (C-terminal domain phosphatase-like 4)

HSP 1 Score: 88.2 bits (217), Expect = 2.7e-18
Identity = 40/74 (54.05%), Postives = 55/74 (74.32%), Query Frame = 0

Query: 1   VLKTVRSKVVMGCKVVFSRVFPIKFQADNHHLWKMVEQLGGTCSIEVDRSLTHVVSTDAG 60
           +LK VR +++ GCK+VFSRVFP K + ++H LWKM E+LG TC+ EVD S+THVV+ D G
Sbjct: 333 MLKQVRKEILKGCKIVFSRVFPTKAKPEDHPLWKMAEELGATCATEVDASVTHVVAMDVG 392

Query: 61  TEKSHSVGFERRDV 75
           TEK+     E++ V
Sbjct: 393 TEKARWAVREKKYV 406

BLAST of Bhi06G000473 vs. TAIR10
Match: AT2G33540.1 (C-terminal domain phosphatase-like 3)

HSP 1 Score: 60.5 bits (145), Expect = 5.9e-10
Identity = 25/64 (39.06%), Postives = 42/64 (65.62%), Query Frame = 0

Query: 1    VLKTVRSKVVMGCKVVFSRVFPI-KFQADNHHLWKMVEQLGGTCSIEVDRSLTHVVSTDA 60
            +L + + K++ GC++VFSR+ P+ + +   H LW+  EQ G  C+ +VD  +THVV+   
Sbjct: 1142 ILASEQRKILAGCRIVFSRIIPVGEAKPHLHPLWQTAEQFGAVCTTQVDEHVTHVVTNSL 1201

Query: 61   GTEK 64
            GT+K
Sbjct: 1202 GTDK 1205

BLAST of Bhi06G000473 vs. TrEMBL
Match: tr|A0A1S3CAQ0|A0A1S3CAQ0_CUCME (RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498688 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = 0

Query: 1   VLKTVRSKVVMGCKVVFSRVFPIKFQADNHHLWKMVEQLGGTCSIEVDRSLTHVVSTDAG 60
           VLKTVR+KV+ GCKVVFSRVFP KFQA+NHHLWKMVEQLGGTCS E+D+S+THVVSTDAG
Sbjct: 345 VLKTVRAKVLEGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDQSVTHVVSTDAG 404

Query: 61  TEKS 65
           TEKS
Sbjct: 405 TEKS 408

BLAST of Bhi06G000473 vs. TrEMBL
Match: tr|A0A1S4E388|A0A1S4E388_CUCME (RNA polymerase II C-terminal domain phosphatase-like 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498688 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = 0

Query: 1   VLKTVRSKVVMGCKVVFSRVFPIKFQADNHHLWKMVEQLGGTCSIEVDRSLTHVVSTDAG 60
           VLKTVR+KV+ GCKVVFSRVFP KFQA+NHHLWKMVEQLGGTCS E+D+S+THVVSTDAG
Sbjct: 256 VLKTVRAKVLEGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDQSVTHVVSTDAG 315

Query: 61  TEKS 65
           TEKS
Sbjct: 316 TEKS 319

BLAST of Bhi06G000473 vs. TrEMBL
Match: tr|A0A0A0KW61|A0A0A0KW61_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650420 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.3e-22
Identity = 52/64 (81.25%), Postives = 60/64 (93.75%), Query Frame = 0

Query: 1   VLKTVRSKVVMGCKVVFSRVFPIKFQADNHHLWKMVEQLGGTCSIEVDRSLTHVVSTDAG 60
           VLKTVR++V+ GCKVVFSRVFP KFQA+NH LWKMVEQLGGTCS E+D+S+THVV+TDAG
Sbjct: 436 VLKTVRAEVLEGCKVVFSRVFPTKFQAENHQLWKMVEQLGGTCSTELDQSVTHVVATDAG 495

Query: 61  TEKS 65
           TEKS
Sbjct: 496 TEKS 499

BLAST of Bhi06G000473 vs. TrEMBL
Match: tr|M5VVV9|M5VVV9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G261400 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.5e-20
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 0

Query: 1   VLKTVRSKVVMGCKVVFSRVFPIKFQADNHHLWKMVEQLGGTCSIEVDRSLTHVVSTDAG 60
           VLKT+R +++ GCK+VFSRVFP KFQA+NH LWKM EQLG TCS E+D S+THVVSTDAG
Sbjct: 348 VLKTLRKEILKGCKIVFSRVFPSKFQAENHQLWKMAEQLGATCSTELDLSVTHVVSTDAG 407

Query: 61  TEKS 65
           TEKS
Sbjct: 408 TEKS 411

BLAST of Bhi06G000473 vs. TrEMBL
Match: tr|A0A251NH63|A0A251NH63_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G261400 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.5e-20
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 0

Query: 1   VLKTVRSKVVMGCKVVFSRVFPIKFQADNHHLWKMVEQLGGTCSIEVDRSLTHVVSTDAG 60
           VLKT+R +++ GCK+VFSRVFP KFQA+NH LWKM EQLG TCS E+D S+THVVSTDAG
Sbjct: 345 VLKTLRKEILKGCKIVFSRVFPSKFQAENHQLWKMAEQLGATCSTELDLSVTHVVSTDAG 404

Query: 61  TEKS 65
           TEKS
Sbjct: 405 TEKS 408

BLAST of Bhi06G000473 vs. NCBI nr
Match: XP_022973448.1 (RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita maxima])

HSP 1 Score: 119.0 bits (297), Expect = 7.8e-24
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 0

Query: 1   VLKTVRSKVVMGCKVVFSRVFPIKFQADNHHLWKMVEQLGGTCSIEVDRSLTHVVSTDAG 60
           VLKTVRSKV+ GCKVVFSRVFP KFQADNHHLWKMVEQLGGTCS E+D S+TH+VSTDAG
Sbjct: 345 VLKTVRSKVLEGCKVVFSRVFPTKFQADNHHLWKMVEQLGGTCSTELDPSVTHIVSTDAG 404

Query: 61  TEKS 65
           TEKS
Sbjct: 405 TEKS 408

BLAST of Bhi06G000473 vs. NCBI nr
Match: XP_008459611.1 (PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Cucumis melo] >XP_008459612.1 PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Cucumis melo] >XP_008459613.1 PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Cucumis melo] >XP_016902439.1 PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = 0

Query: 1   VLKTVRSKVVMGCKVVFSRVFPIKFQADNHHLWKMVEQLGGTCSIEVDRSLTHVVSTDAG 60
           VLKTVR+KV+ GCKVVFSRVFP KFQA+NHHLWKMVEQLGGTCS E+D+S+THVVSTDAG
Sbjct: 345 VLKTVRAKVLEGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDQSVTHVVSTDAG 404

Query: 61  TEKS 65
           TEKS
Sbjct: 405 TEKS 408

BLAST of Bhi06G000473 vs. NCBI nr
Match: XP_008459615.1 (PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 isoform X2 [Cucumis melo] >XP_016902440.1 PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 isoform X2 [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = 0

Query: 1   VLKTVRSKVVMGCKVVFSRVFPIKFQADNHHLWKMVEQLGGTCSIEVDRSLTHVVSTDAG 60
           VLKTVR+KV+ GCKVVFSRVFP KFQA+NHHLWKMVEQLGGTCS E+D+S+THVVSTDAG
Sbjct: 256 VLKTVRAKVLEGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDQSVTHVVSTDAG 315

Query: 61  TEKS 65
           TEKS
Sbjct: 316 TEKS 319

BLAST of Bhi06G000473 vs. NCBI nr
Match: XP_023525838.1 (RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 55/64 (85.94%), Postives = 60/64 (93.75%), Query Frame = 0

Query: 1   VLKTVRSKVVMGCKVVFSRVFPIKFQADNHHLWKMVEQLGGTCSIEVDRSLTHVVSTDAG 60
           VLKTVRSKV+ GCKVVFSRVFP KFQADNHHLWKMVE+LGGTCS E+D S+TH+VSTDAG
Sbjct: 345 VLKTVRSKVLEGCKVVFSRVFPTKFQADNHHLWKMVEKLGGTCSTELDASVTHIVSTDAG 404

Query: 61  TEKS 65
           TEKS
Sbjct: 405 TEKS 408

BLAST of Bhi06G000473 vs. NCBI nr
Match: XP_022949466.1 (RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita moschata])

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-23
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 0

Query: 1   VLKTVRSKVVMGCKVVFSRVFPIKFQADNHHLWKMVEQLGGTCSIEVDRSLTHVVSTDAG 60
           VLKTVRSKV+ GCKVVFSRVFP KFQADNHHLWKMVEQLGGTCS E+D S+TH+VSTDAG
Sbjct: 345 VLKTVRSKVLEGCKVVFSRVFPTKFQADNHHLWKMVEQLGGTCSTELDASVTHIVSTDAG 404

Query: 61  TEKS 65
            EKS
Sbjct: 405 MEKS 408

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
sp|Q00IB6|CPL4_ARATH4.8e-1754.05RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana O... [more]
sp|Q8LL04|CPL3_ARATH1.1e-0839.06RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
AT5G58003.12.7e-1854.05C-terminal domain phosphatase-like 4[more]
AT2G33540.15.9e-1039.06C-terminal domain phosphatase-like 3[more]
Match NameE-valueIdentityDescription
tr|A0A1S3CAQ0|A0A1S3CAQ0_CUCME1.1e-2385.94RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 OS=Cucumis mel... [more]
tr|A0A1S4E388|A0A1S4E388_CUCME1.1e-2385.94RNA polymerase II C-terminal domain phosphatase-like 4 isoform X2 OS=Cucumis mel... [more]
tr|A0A0A0KW61|A0A0A0KW61_CUCSA6.3e-2281.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650420 PE=4 SV=1[more]
tr|M5VVV9|M5VVV9_PRUPE4.5e-2075.00Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G261400 PE=4 SV=1[more]
tr|A0A251NH63|A0A251NH63_PRUPE4.5e-2075.00Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G261400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022973448.17.8e-2487.50RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita maxima][more]
XP_008459611.11.7e-2385.94PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Cu... [more]
XP_008459615.11.7e-2385.94PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 isoform X2 [Cu... [more]
XP_023525838.11.7e-2385.94RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita pepo subsp. pe... [more]
XP_022949466.12.9e-2385.94RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita moschata][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008420CTD phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0070940dephosphorylation of RNA polymerase II C-terminal domain
Vocabulary: INTERPRO
TermDefinition
IPR039189Fcp1
IPR036420BRCT_dom_sf
IPR001357BRCT_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain
biological_process GO:0009651 response to salt stress
cellular_component GO:0005634 nucleus
molecular_function GO:0008420 CTD phosphatase activity
molecular_function GO:0008022 protein C-terminus binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M000473Bhi06M000473mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001357BRCT domainPFAMPF12738PTCB-BRCTcoord: 28..63
e-value: 2.6E-6
score: 27.2
IPR001357BRCT domainCDDcd00027BRCTcoord: 12..71
e-value: 7.41447E-4
score: 32.2935
IPR036420BRCT domain superfamilyGENE3DG3DSA:3.40.50.10190coord: 9..80
e-value: 6.5E-13
score: 50.8
IPR036420BRCT domain superfamilySUPERFAMILYSSF52113BRCT domaincoord: 11..65
IPR039189CTD phosphatase Fcp1PANTHERPTHR23081RNA POLYMERASE II CTD PHOSPHATASEcoord: 1..66

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi06G000473Melon (DHL92) v3.5.1mewgoB022
Bhi06G000473Wax gourdwgowgoB001
Bhi06G000473Cucumber (Gy14) v1cgywgoB388
Bhi06G000473Cucumber (Gy14) v1cgywgoB405
Bhi06G000473Cucumber (Gy14) v1cgywgoB679
Bhi06G000473Cucumber (Gy14) v2cgybwgoB008
Bhi06G000473Cucumber (Gy14) v2cgybwgoB255
Bhi06G000473Cucumber (Gy14) v2cgybwgoB448
Bhi06G000473Cucurbita maxima (Rimu)cmawgoB0054
Bhi06G000473Cucurbita maxima (Rimu)cmawgoB0100
Bhi06G000473Cucurbita maxima (Rimu)cmawgoB0314
Bhi06G000473Cucurbita maxima (Rimu)cmawgoB0380
Bhi06G000473Cucurbita maxima (Rimu)cmawgoB0839
Bhi06G000473Cucurbita moschata (Rifu)cmowgoB0048
Bhi06G000473Cucurbita moschata (Rifu)cmowgoB0097
Bhi06G000473Cucurbita moschata (Rifu)cmowgoB0302
Bhi06G000473Cucurbita moschata (Rifu)cmowgoB0374
Bhi06G000473Cucurbita moschata (Rifu)cmowgoB0836
Bhi06G000473Cucurbita pepo (Zucchini)cpewgoB0239
Bhi06G000473Cucurbita pepo (Zucchini)cpewgoB0502
Bhi06G000473Cucurbita pepo (Zucchini)cpewgoB0769
Bhi06G000473Wild cucumber (PI 183967)cpiwgoB009
Bhi06G000473Wild cucumber (PI 183967)cpiwgoB267
Bhi06G000473Wild cucumber (PI 183967)cpiwgoB474
Bhi06G000473Cucumber (Chinese Long) v3cucwgoB009
Bhi06G000473Cucumber (Chinese Long) v3cucwgoB270
Bhi06G000473Cucumber (Chinese Long) v3cucwgoB483
Bhi06G000473Cucumber (Chinese Long) v2cuwgoB007
Bhi06G000473Cucumber (Chinese Long) v2cuwgoB267
Bhi06G000473Cucumber (Chinese Long) v2cuwgoB471
Bhi06G000473Bottle gourd (USVL1VR-Ls)lsiwgoB207
Bhi06G000473Bottle gourd (USVL1VR-Ls)lsiwgoB313
Bhi06G000473Bottle gourd (USVL1VR-Ls)lsiwgoB476
Bhi06G000473Melon (DHL92) v3.6.1medwgoB020
Bhi06G000473Melon (DHL92) v3.6.1medwgoB392
Bhi06G000473Melon (DHL92) v3.5.1mewgoB391
Bhi06G000473Watermelon (Charleston Gray)wcgwgoB016
Bhi06G000473Watermelon (Charleston Gray)wcgwgoB111
Bhi06G000473Watermelon (Charleston Gray)wcgwgoB508
Bhi06G000473Watermelon (97103) v2wgowmbB114
Bhi06G000473Watermelon (97103) v2wgowmbB151
Bhi06G000473Watermelon (97103) v1wgowmB115
Bhi06G000473Watermelon (97103) v1wgowmB122
Bhi06G000473Silver-seed gourdcarwgoB0339
Bhi06G000473Silver-seed gourdcarwgoB0443
Bhi06G000473Silver-seed gourdcarwgoB0451
Bhi06G000473Silver-seed gourdcarwgoB0523
Bhi06G000473Silver-seed gourdcarwgoB0801