Bhi06G000079 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi06G000079
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	delta(24)-sterol reductase-like
Location	chr6 : 1830000 .. 1830161 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAATGTCCAGAAAGTTGTCGAACGCCTCAAATAGAGAAATCCTTCGAAATGTTGGCCTCGTCTTCACTGCTCGTAAGCCTTGGCTTGCGGTGGGAATGCGAAATGTTGACTACAAACGAGCATGCCACTTTGAGGTTGATCTATCGACTTTTTGA

mRNA sequence

ATGAAGAAAATGTCCAGAAAGTTGTCGAACGCCTCAAATAGAGAAATCCTTCGAAATGTTGGCCTCGTCTTCACTGCTCGTAAGCCTTGGCTTGCGGTGGGAATGCGAAATGTTGACTACAAACGAGCATGCCACTTTGAGGTTGATCTATCGACTTTTTGA

Coding sequence (CDS)

ATGAAGAAAATGTCCAGAAAGTTGTCGAACGCCTCAAATAGAGAAATCCTTCGAAATGTTGGCCTCGTCTTCACTGCTCGTAAGCCTTGGCTTGCGGTGGGAATGCGAAATGTTGACTACAAACGAGCATGCCACTTTGAGGTTGATCTATCGACTTTTTGA

Protein sequence

MKKMSRKLSNASNREILRNVGLVFTARKPWLAVGMRNVDYKRACHFEVDLSTF

Homology

[Close]

BLAST of Bhi06G000079 vs. Swiss-Prot
Match: sp|P93472|DIM_PEA (Delta(24)-sterol reductase OS=Pisum sativum OX=3888 GN=DIM PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.0e-10
Identity = 34/55 (61.82%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 2   KKMSRKLSNASNREILRNV---GLVFTARKPWLAVGMRNVDYKRACHFEVDLSTF 54
           K+    +    NR   RN    GLV TARKPW+AVGMRNVDYKRA HFEVDLS F
Sbjct: 60  KEHDENVQKVVNRLKKRNPSKDGLVCTARKPWVAVGMRNVDYKRARHFEVDLSPF 114

[Close]

BLAST of Bhi06G000079 vs. Swiss-Prot
Match: sp|Q39085|DIM_ARATH (Delta(24)-sterol reductase OS=Arabidopsis thaliana OX=3702 GN=DIM PE=1 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 7.9e-10
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 21  GLVFTARKPWLAVGMRNVDYKRACHFEVDLSTF 54
           GLV TARKPW+AVGMRNVDYKRA HFEVDL  F
Sbjct: 83  GLVCTARKPWIAVGMRNVDYKRARHFEVDLGEF 115

[Close]

BLAST of Bhi06G000079 vs. TAIR10
Match: AT3G19820.1 (cell elongation protein / DWARF1 / DIMINUTO (DIM))

HSP 1 Score: 63.5 bits (153), Expect = 4.4e-11
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 21  GLVFTARKPWLAVGMRNVDYKRACHFEVDLSTF 54
           GLV TARKPW+AVGMRNVDYKRA HFEVDL  F
Sbjct: 83  GLVCTARKPWIAVGMRNVDYKRARHFEVDLGEF 115

[Close]

BLAST of Bhi06G000079 vs. TrEMBL
Match: tr|A0A1S3CCJ1|A0A1S3CCJ1_CUCME (delta(24)-sterol reductase-like OS=Cucumis melo OX=3656 GN=LOC103499124 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-08
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 21  GLVFTARKPWLAVGMRNVDYKRACHFEVDLSTF 54
           GLV TARKPWLAVGMRNVDYKRA HFEVDLS F
Sbjct: 81  GLVCTARKPWLAVGMRNVDYKRARHFEVDLSAF 113

[Close]

BLAST of Bhi06G000079 vs. TrEMBL
Match: tr|A0A0A0KZ82|A0A0A0KZ82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G103350 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-08
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 21  GLVFTARKPWLAVGMRNVDYKRACHFEVDLSTF 54
           GLV TARKPWLAVGMRNVDYKRA HFEVDLS F
Sbjct: 82  GLVCTARKPWLAVGMRNVDYKRARHFEVDLSAF 114

[Close]

BLAST of Bhi06G000079 vs. TrEMBL
Match: tr|A0A096QRL3|A0A096QRL3_MAIZE (Nana plant2 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d014887 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-08
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 21  GLVFTARKPWLAVGMRNVDYKRACHFEVDLSTF 54
           GLV TARKPW+AVGMRNVDYKRA HFEVDLS+F
Sbjct: 83  GLVCTARKPWIAVGMRNVDYKRARHFEVDLSSF 115

[Close]

BLAST of Bhi06G000079 vs. TrEMBL
Match: tr|A0A096QRL6|A0A096QRL6_MAIZE (Nana plant2 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d014887 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-08
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 21  GLVFTARKPWLAVGMRNVDYKRACHFEVDLSTF 54
           GLV TARKPW+AVGMRNVDYKRA HFEVDLS+F
Sbjct: 83  GLVCTARKPWIAVGMRNVDYKRARHFEVDLSSF 115

[Close]

BLAST of Bhi06G000079 vs. TrEMBL
Match: tr|A0A2U1PZ21|A0A2U1PZ21_ARTAN (FAD-binding, type 2 OS=Artemisia annua OX=35608 GN=CTI12_AA095800 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-08
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 21  GLVFTARKPWLAVGMRNVDYKRACHFEVDLSTF 54
           GLV TARKPW+AVGMRNVDYKRA HFEVDLS+F
Sbjct: 83  GLVCTARKPWIAVGMRNVDYKRARHFEVDLSSF 115

[Close]

BLAST of Bhi06G000079 vs. NCBI nr
Match: XP_004137177.1 (PREDICTED: delta(24)-sterol reductase-like [Cucumis sativus] >XP_011653373.1 PREDICTED: delta(24)-sterol reductase-like [Cucumis sativus] >KGN53687.1 hypothetical protein Csa_4G103350 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 3.7e-08
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 21  GLVFTARKPWLAVGMRNVDYKRACHFEVDLSTF 54
           GLV TARKPWLAVGMRNVDYKRA HFEVDLS F
Sbjct: 82  GLVCTARKPWLAVGMRNVDYKRARHFEVDLSAF 114

[Close]

BLAST of Bhi06G000079 vs. NCBI nr
Match: XP_008460246.1 (PREDICTED: delta(24)-sterol reductase-like [Cucumis melo] >XP_008460247.1 PREDICTED: delta(24)-sterol reductase-like [Cucumis melo] >XP_008460248.1 PREDICTED: delta(24)-sterol reductase-like [Cucumis melo] >XP_008460249.1 PREDICTED: delta(24)-sterol reductase-like [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 3.7e-08
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 21  GLVFTARKPWLAVGMRNVDYKRACHFEVDLSTF 54
           GLV TARKPWLAVGMRNVDYKRA HFEVDLS F
Sbjct: 81  GLVCTARKPWLAVGMRNVDYKRARHFEVDLSAF 113

[Close]

BLAST of Bhi06G000079 vs. NCBI nr
Match: XP_022948298.1 (delta(24)-sterol reductase-like [Cucurbita moschata] >XP_022948299.1 delta(24)-sterol reductase-like [Cucurbita moschata])

HSP 1 Score: 66.2 bits (160), Expect = 3.7e-08
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 21  GLVFTARKPWLAVGMRNVDYKRACHFEVDLSTF 54
           GLV TARKPWLAVGMRNVDYKRA HFEVDLS F
Sbjct: 82  GLVCTARKPWLAVGMRNVDYKRARHFEVDLSAF 114

[Close]

BLAST of Bhi06G000079 vs. NCBI nr
Match: XP_022998421.1 (delta(24)-sterol reductase-like [Cucurbita maxima] >XP_022998422.1 delta(24)-sterol reductase-like [Cucurbita maxima])

HSP 1 Score: 66.2 bits (160), Expect = 3.7e-08
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 21  GLVFTARKPWLAVGMRNVDYKRACHFEVDLSTF 54
           GLV TARKPWLAVGMRNVDYKRA HFEVDLS F
Sbjct: 82  GLVCTARKPWLAVGMRNVDYKRARHFEVDLSAF 114

[Close]

BLAST of Bhi06G000079 vs. NCBI nr
Match: XP_023523527.1 (delta(24)-sterol reductase-like [Cucurbita pepo subsp. pepo] >XP_023523528.1 delta(24)-sterol reductase-like [Cucurbita pepo subsp. pepo] >XP_023523529.1 delta(24)-sterol reductase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.2 bits (160), Expect = 3.7e-08
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 21  GLVFTARKPWLAVGMRNVDYKRACHFEVDLSTF 54
           GLV TARKPWLAVGMRNVDYKRA HFEVDLS F
Sbjct: 82  GLVCTARKPWLAVGMRNVDYKRARHFEVDLSAF 114

The following BLAST results are available for this feature:

BLAST of Bhi06G000079 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P93472\|DIM_PEA	6.0e-10	61.82	Delta(24)-sterol reductase OS=Pisum sativum OX=3888 GN=DIM PE=1 SV=1	[more]
sp\|Q39085\|DIM_ARATH	7.9e-10	84.85	Delta(24)-sterol reductase OS=Arabidopsis thaliana OX=3702 GN=DIM PE=1 SV=2	[more]

BLAST of Bhi06G000079 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19820.1	4.4e-11	84.85	cell elongation protein / DWARF1 / DIMINUTO (DIM)	[more]

BLAST of Bhi06G000079 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CCJ1\|A0A1S3CCJ1_CUCME	2.5e-08	90.91	delta(24)-sterol reductase-like OS=Cucumis melo OX=3656 GN=LOC103499124 PE=4 SV=...	[more]
tr\|A0A0A0KZ82\|A0A0A0KZ82_CUCSA	2.5e-08	90.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G103350 PE=4 SV=1	[more]
tr\|A0A096QRL3\|A0A096QRL3_MAIZE	3.2e-08	87.88	Nana plant2 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d014887 PE=4 SV=1	[more]
tr\|A0A096QRL6\|A0A096QRL6_MAIZE	3.2e-08	87.88	Nana plant2 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d014887 PE=4 SV=1	[more]
tr\|A0A2U1PZ21\|A0A2U1PZ21_ARTAN	3.2e-08	87.88	FAD-binding, type 2 OS=Artemisia annua OX=35608 GN=CTI12_AA095800 PE=4 SV=1	[more]

BLAST of Bhi06G000079 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137177.1	3.7e-08	90.91	PREDICTED: delta(24)-sterol reductase-like [Cucumis sativus] >XP_011653373.1 PRE...	[more]
XP_008460246.1	3.7e-08	90.91	PREDICTED: delta(24)-sterol reductase-like [Cucumis melo] >XP_008460247.1 PREDIC...	[more]
XP_022948298.1	3.7e-08	90.91	delta(24)-sterol reductase-like [Cucurbita moschata] >XP_022948299.1 delta(24)-s...	[more]
XP_022998421.1	3.7e-08	90.91	delta(24)-sterol reductase-like [Cucurbita maxima] >XP_022998422.1 delta(24)-ste...	[more]
XP_023523527.1	3.7e-08	90.91	delta(24)-sterol reductase-like [Cucurbita pepo subsp. pepo] >XP_023523528.1 del...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000079	Bhi06M000079	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi06G000079	Cucumber (Gy14) v1	cgywgoB471
Bhi06G000079	Cucumber (Gy14) v2	cgybwgoB439
Bhi06G000079	Cucurbita maxima (Rimu)	cmawgoB0384
Bhi06G000079	Cucurbita maxima (Rimu)	cmawgoB0837
Bhi06G000079	Cucurbita moschata (Rifu)	cmowgoB0377
Bhi06G000079	Cucurbita moschata (Rifu)	cmowgoB0834
Bhi06G000079	Cucurbita pepo (Zucchini)	cpewgoB0236
Bhi06G000079	Cucurbita pepo (Zucchini)	cpewgoB0501
Bhi06G000079	Wild cucumber (PI 183967)	cpiwgoB465
Bhi06G000079	Cucumber (Chinese Long) v3	cucwgoB474
Bhi06G000079	Cucumber (Chinese Long) v2	cuwgoB461
Bhi06G000079	Bottle gourd (USVL1VR-Ls)	lsiwgoB310
Bhi06G000079	Melon (DHL92) v3.6.1	medwgoB023
Bhi06G000079	Melon (DHL92) v3.6.1	medwgoB027
Bhi06G000079	Melon (DHL92) v3.5.1	mewgoB025
Bhi06G000079	Melon (DHL92) v3.5.1	mewgoB029
Bhi06G000079	Watermelon (Charleston Gray)	wcgwgoB145
Bhi06G000079	Watermelon (97103) v2	wgowmbB118
Bhi06G000079	Watermelon (97103) v1	wgowmB146
Bhi06G000079	Silver-seed gourd	carwgoB0019
Bhi06G000079	Silver-seed gourd	carwgoB0342