Bhi05G001820 (gene) Wax gourd

NameBhi05G001820
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionProtein Ycf2
Locationchr5 : 64259905 .. 64260207 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCCTTGGGGCTTTCTATTTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCTTATTGGGCTAGGTCATTTCGGGGCAAGCGGATCATTTATGATGAAGAGGATGGCTTCAAGAGATGATTCGGAGTTCTTGCAAAGTGGAACATGCAGTACCAGACACGAGATAGATTTCCAAAGAACAAGGCTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCTTTTGTCTCTGTGTTTTCACATCGAGAATTCTTTTGCAGATGA

mRNA sequence

ATGGCGCCCTTGGGGCTTTCTATTTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCTTATTGGGCTAGGTCATTTCGGGGCAAGCGGATCATTTATGATGAAGAGGATGGCTTCAAGAGATGATTCGGAGTTCTTGCAAAGTGGAACATGCAGTACCAGACACGAGATAGATTTCCAAAGAACAAGGCTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCTTTTGTCTCTGTGTTTTCACATCGAGAATTCTTTTGCAGATGA

Coding sequence (CDS)

ATGGCGCCCTTGGGGCTTTCTATTTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCTTATTGGGCTAGGTCATTTCGGGGCAAGCGGATCATTTATGATGAAGAGGATGGCTTCAAGAGATGATTCGGAGTTCTTGCAAAGTGGAACATGCAGTACCAGACACGAGATAGATTTCCAAAGAACAAGGCTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCTTTTGTCTCTGTGTTTTCACATCGAGAATTCTTTTGCAGATGA

Protein sequence

MAPLGLSILIVSKGPMNWDFLIGLGHFGASGSFMMKRMASRDDSEFLQSGTCSTRHEIDFQRTRLFSNKPIHLGSCRSTLFPIQRSAFVSVFSHREFFCR
BLAST of Bhi05G001820 vs. TrEMBL
Match: tr|A0A1Y3BTY0|A0A1Y3BTY0_HELAN (Protein Ycf2 OS=Helianthus annuus OX=4232 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 9    LIVSKGPMNWDFLIGLGHFGASGSFMMKRMA 40
            LIVSKGPMNWDF IG GHFGASGSFM+KRM+
Sbjct: 1762 LIVSKGPMNWDFPIGPGHFGASGSFMIKRMS 1792

BLAST of Bhi05G001820 vs. TrEMBL
Match: tr|B9SB43|B9SB43_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0784430 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-05
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 2   APLGLSILIVSKGPMNWDFLIGLGHFGASGSFMMKRMA-SRDDSEFLQSGTCSTRHEIDF 61
           A LG +I     GPMNWDF I  GHFGASGSF+MKRM+  R      +   CSTR+EID 
Sbjct: 388 ANLGFAI----PGPMNWDFPIRPGHFGASGSFIMKRMSFKRMIRSSCRVEPCSTRYEIDP 447

Query: 62  QRTRLF 67
            + + F
Sbjct: 448 PKNKAF 449

BLAST of Bhi05G001820 vs. TrEMBL
Match: tr|A0A1D0C3F1|A0A1D0C3F1_9FABA (Protein Ycf2 OS=Acacia merrallii OX=1378388 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-05
Identity = 31/60 (51.67%), Postives = 35/60 (58.33%), Query Frame = 0

Query: 42   DDSEFLQSGTCSTR-HEIDFQRTRLFSNKPIHLGSCRSTLFPIQRSAFVSVFSHREFFCR 101
            +DSEFLQSGT   +  +   +    FSNKPIHLG C STLFPIQRS F          CR
Sbjct: 2127 NDSEFLQSGTMLYQTRDRSSKEQGFFSNKPIHLGPCGSTLFPIQRSVFCLCVFPSRILCR 2186

BLAST of Bhi05G001820 vs. NCBI nr
Match: OTF84429.1 (putative ATPase, AAA-type, core [Helianthus annuus])

HSP 1 Score: 60.1 bits (144), Expect = 5.0e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 9    LIVSKGPMNWDFLIGLGHFGASGSFMMKRMA 40
            LIVSKGPMNWDF IG GHFGASGSFM+KRM+
Sbjct: 1762 LIVSKGPMNWDFPIGPGHFGASGSFMIKRMS 1792

BLAST of Bhi05G001820 vs. NCBI nr
Match: EEF39133.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-05
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 2   APLGLSILIVSKGPMNWDFLIGLGHFGASGSFMMKRMA-SRDDSEFLQSGTCSTRHEIDF 61
           A LG +I     GPMNWDF I  GHFGASGSF+MKRM+  R      +   CSTR+EID 
Sbjct: 388 ANLGFAI----PGPMNWDFPIRPGHFGASGSFIMKRMSFKRMIRSSCRVEPCSTRYEIDP 447

Query: 62  QRTRLF 67
            + + F
Sbjct: 448 PKNKAF 449

BLAST of Bhi05G001820 vs. NCBI nr
Match: CUR04569.1 (ycf2 (chloroplast) [Acacia merrallii])

HSP 1 Score: 56.6 bits (135), Expect = 5.6e-05
Identity = 31/60 (51.67%), Postives = 35/60 (58.33%), Query Frame = 0

Query: 42   DDSEFLQSGTCSTR-HEIDFQRTRLFSNKPIHLGSCRSTLFPIQRSAFVSVFSHREFFCR 101
            +DSEFLQSGT   +  +   +    FSNKPIHLG C STLFPIQRS F          CR
Sbjct: 2127 NDSEFLQSGTMLYQTRDRSSKEQGFFSNKPIHLGPCGSTLFPIQRSVFCLCVFPSRILCR 2186

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1Y3BTY0|A0A1Y3BTY0_HELAN3.3e-0687.10Protein Ycf2 OS=Helianthus annuus OX=4232 GN=ycf2 PE=3 SV=1[more]
tr|B9SB43|B9SB43_RICCO1.3e-0551.52Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0784430 PE=4 SV=1[more]
tr|A0A1D0C3F1|A0A1D0C3F1_9FABA3.7e-0551.67Protein Ycf2 OS=Acacia merrallii OX=1378388 GN=ycf2 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
OTF84429.15.0e-0687.10putative ATPase, AAA-type, core [Helianthus annuus][more]
EEF39133.11.9e-0551.52conserved hypothetical protein [Ricinus communis][more]
CUR04569.15.6e-0551.67ycf2 (chloroplast) [Acacia merrallii][more]

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi05M001820Bhi05M001820mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None