Bhi05G001680 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G001680
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Protein Ycf2
Location	chr5 : 60360588 .. 60360791 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATCTATTCACTCTATCAATAACCGAGTCAGATCTGGTGTATCATAAGGGATTTGCCTTTTCTATTGATTCCTACGGATTGGATCAAAAACAATTCTTGAATGAGGTATTCAACTCCAGGGATGAATTGAAAAAGAAATGTTTATTGGTTCTACCTCCCAGATCTTATATTAGGAAGTATGAGAGTACTATTATTTAA

mRNA sequence

ATGGCAGATCTATTCACTCTATCAATAACCGAGTCAGATCTGGTGTATCATAAGGGATTTGCCTTTTCTATTGATTCCTACGGATTGGATCAAAAACAATTCTTGAATGAGGTATTCAACTCCAGGGATGAATTGAAAAAGAAATGTTTATTGGTTCTACCTCCCAGATCTTATATTAGGAAGTATGAGAGTACTATTATTTAA

Coding sequence (CDS)

ATGGCAGATCTATTCACTCTATCAATAACCGAGTCAGATCTGGTGTATCATAAGGGATTTGCCTTTTCTATTGATTCCTACGGATTGGATCAAAAACAATTCTTGAATGAGGTATTCAACTCCAGGGATGAATTGAAAAAGAAATGTTTATTGGTTCTACCTCCCAGATCTTATATTAGGAAGTATGAGAGTACTATTATTTAA

Protein sequence

MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSYIRKYESTII

Homology

[Close]

BLAST of Bhi05G001680 vs. Swiss-Prot
Match: sp|B1A978|YCF2_CARPA (Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-22
Identity = 53/58 (91.38%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1   MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSY 59
           MADLFTLSITE DLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDE KKK LLVLPP  Y
Sbjct: 617 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFY 674

[Close]

BLAST of Bhi05G001680 vs. Swiss-Prot
Match: sp|Q2QD30|YCF2_CUCSA (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-22
Identity = 53/58 (91.38%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1   MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSY 59
           MADLFTLSITE DLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDE KKK LLVLPP  Y
Sbjct: 327 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDESKKKYLLVLPPIFY 384

[Close]

BLAST of Bhi05G001680 vs. Swiss-Prot
Match: sp|A6MMG6|YCF2_CHLSC (Protein Ycf2 OS=Chloranthus spicatus OX=13006 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.9e-22
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1   MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSY 59
           MADLFTLSITE DLVYHKGFAFSIDSYGLDQK+FLNEVFNSRDE KKK LLVLPP  Y
Sbjct: 624 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQKKFLNEVFNSRDESKKKSLLVLPPIFY 681

[Close]

BLAST of Bhi05G001680 vs. Swiss-Prot
Match: sp|Q0G9Q1|YCF2_DAUCA (Protein Ycf2 OS=Daucus carota OX=4039 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.9e-22
Identity = 52/58 (89.66%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1   MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSY 59
           MADLFTLSITE DLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDE KKK LL LPP  Y
Sbjct: 419 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDESKKKSLLALPPFFY 476

[Close]

BLAST of Bhi05G001680 vs. Swiss-Prot
Match: sp|Q06GT4|YCF2_DRIGR (Protein Ycf2 OS=Drimys granadensis OX=224735 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.9e-22
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1   MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSY 59
           MADLFTLSITE DLVYHKGFAFSIDSYGLDQK+FLNEVFNSRDE KKK LLVLPP  Y
Sbjct: 622 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQKKFLNEVFNSRDESKKKSLLVLPPIFY 679

[Close]

BLAST of Bhi05G001680 vs. TAIR10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 100.5 bits (249), Expect = 4.1e-22
Identity = 50/58 (86.21%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1   MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSY 59
           MADLFTLSITE DLVYHKGFAFSIDSYGLDQ+QFL EVFN RDE KKK LLVLPP  Y
Sbjct: 617 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQRQFLKEVFNFRDESKKKSLLVLPPIFY 674

[Close]

BLAST of Bhi05G001680 vs. TAIR10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 100.5 bits (249), Expect = 4.1e-22
Identity = 50/58 (86.21%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1   MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSY 59
           MADLFTLSITE DLVYHKGFAFSIDSYGLDQ+QFL EVFN RDE KKK LLVLPP  Y
Sbjct: 617 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQRQFLKEVFNFRDESKKKSLLVLPPIFY 674

[Close]

BLAST of Bhi05G001680 vs. TrEMBL
Match: tr|A6YA07|A6YA07_LIQST (Protein Ycf2 OS=Liquidambar styraciflua OX=4400 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.5e-21
Identity = 54/58 (93.10%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1   MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSY 59
           MADLFTLSITE DLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKK LLVLPP  Y
Sbjct: 617 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKSLLVLPPIFY 674

[Close]

BLAST of Bhi05G001680 vs. TrEMBL
Match: tr|D3WBE4|D3WBE4_9ASTE (Protein Ycf2 OS=Ehretia acuminata OX=163079 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-20
Identity = 53/58 (91.38%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1   MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSY 59
           MADLFTLSITE DLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDE KKK LLVLPP  Y
Sbjct: 617 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPSFY 674

[Close]

BLAST of Bhi05G001680 vs. TrEMBL
Match: tr|A0A1S5S0A7|A0A1S5S0A7_9APIA (Protein Ycf2 OS=Daucus pumilus OX=40858 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-20
Identity = 53/58 (91.38%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1   MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSY 59
           MADLFTLSITE DLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKK LL LPP  Y
Sbjct: 419 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKSLLALPPFFY 476

[Close]

BLAST of Bhi05G001680 vs. TrEMBL
Match: tr|A0A0S0ZMG0|A0A0S0ZMG0_9ASTE (Ycf2 (Fragment) OS=Nama carnosa OX=1171443 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-20
Identity = 53/58 (91.38%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1   MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSY 59
           MADLFTLSITE DLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDE KKK LLVLPP  Y
Sbjct: 634 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPSFY 691

[Close]

BLAST of Bhi05G001680 vs. TrEMBL
Match: tr|A0A0S0ZMC4|A0A0S0ZMC4_9ASTE (Ycf2 (Fragment) OS=Cordia sebestena OX=163077 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-20
Identity = 53/58 (91.38%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1   MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSY 59
           MADLFTLSITE DLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDE KKK LLVLPP  Y
Sbjct: 634 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPSFY 691

[Close]

BLAST of Bhi05G001680 vs. NCBI nr
Match: ABQ14867.1 (Ycf2 (chloroplast) [Liquidambar styraciflua] >ADD30896.1 putative RF2 protein (chloroplast) [Liquidambar styraciflua] >AEK71758.1 hypothetical chloroplast RF2 (plastid) [Liquidambar styraciflua])

HSP 1 Score: 108.6 bits (270), Expect = 8.3e-21
Identity = 54/58 (93.10%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1   MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSY 59
           MADLFTLSITE DLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKK LLVLPP  Y
Sbjct: 617 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKSLLVLPPIFY 674

[Close]

BLAST of Bhi05G001680 vs. NCBI nr
Match: ADD30882.1 (putative RF2 protein (chloroplast) [Ehretia acuminata] >AEK71601.1 hypothetical chloroplast RF2 (plastid) [Ehretia acuminata])

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20
Identity = 53/58 (91.38%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1   MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSY 59
           MADLFTLSITE DLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDE KKK LLVLPP  Y
Sbjct: 617 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPSFY 674

[Close]

BLAST of Bhi05G001680 vs. NCBI nr
Match: ALI91605.1 (Ycf2, partial (chloroplast) [Cordia sebestena])

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20
Identity = 53/58 (91.38%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1   MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSY 59
           MADLFTLSITE DLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDE KKK LLVLPP  Y
Sbjct: 634 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPSFY 691

[Close]

BLAST of Bhi05G001680 vs. NCBI nr
Match: ALI91622.1 (Ycf2, partial (chloroplast) [Nama carnosa])

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20
Identity = 53/58 (91.38%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1   MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSY 59
           MADLFTLSITE DLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDE KKK LLVLPP  Y
Sbjct: 634 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPSFY 691

[Close]

BLAST of Bhi05G001680 vs. NCBI nr
Match: APB94752.1 (hypothetical protein RF2 (plastid) [Daucus pumilus] >APB94769.1 hypothetical protein RF2 (plastid) [Daucus pumilus])

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20
Identity = 53/58 (91.38%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1   MADLFTLSITESDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKCLLVLPPRSY 59
           MADLFTLSITE DLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKK LL LPP  Y
Sbjct: 419 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQKQFLNEVFNSRDELKKKSLLALPPFFY 476

The following BLAST results are available for this feature:

BLAST of Bhi05G001680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B1A978\|YCF2_CARPA	1.3e-22	91.38	Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1	[more]
sp\|Q2QD30\|YCF2_CUCSA	1.8e-22	91.38	Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1	[more]
sp\|A6MMG6\|YCF2_CHLSC	3.9e-22	89.66	Protein Ycf2 OS=Chloranthus spicatus OX=13006 GN=ycf2-A PE=3 SV=1	[more]
sp\|Q0G9Q1\|YCF2_DAUCA	3.9e-22	89.66	Protein Ycf2 OS=Daucus carota OX=4039 GN=ycf2-A PE=3 SV=1	[more]
sp\|Q06GT4\|YCF2_DRIGR	3.9e-22	89.66	Protein Ycf2 OS=Drimys granadensis OX=224735 GN=ycf2-A PE=3 SV=1	[more]

BLAST of Bhi05G001680 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00860.1	4.1e-22	86.21	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	4.1e-22	86.21	Chloroplast Ycf2;ATPase, AAA type, core	[more]

BLAST of Bhi05G001680 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A6YA07\|A6YA07_LIQST	5.5e-21	93.10	Protein Ycf2 OS=Liquidambar styraciflua OX=4400 GN=ycf2 PE=3 SV=1	[more]
tr\|D3WBE4\|D3WBE4_9ASTE	1.6e-20	91.38	Protein Ycf2 OS=Ehretia acuminata OX=163079 GN=ycf2 PE=3 SV=1	[more]
tr\|A0A1S5S0A7\|A0A1S5S0A7_9APIA	1.6e-20	91.38	Protein Ycf2 OS=Daucus pumilus OX=40858 GN=ycf2 PE=3 SV=1	[more]
tr\|A0A0S0ZMG0\|A0A0S0ZMG0_9ASTE	1.6e-20	91.38	Ycf2 (Fragment) OS=Nama carnosa OX=1171443 GN=ycf2 PE=3 SV=1	[more]
tr\|A0A0S0ZMC4\|A0A0S0ZMC4_9ASTE	1.6e-20	91.38	Ycf2 (Fragment) OS=Cordia sebestena OX=163077 GN=ycf2 PE=3 SV=1	[more]

BLAST of Bhi05G001680 vs. NCBI nr


Match Name	E-value	Identity	Description
ABQ14867.1	8.3e-21	93.10	Ycf2 (chloroplast) [Liquidambar styraciflua] >ADD30896.1 putative RF2 protein (c...	[more]
ADD30882.1	2.4e-20	91.38	putative RF2 protein (chloroplast) [Ehretia acuminata] >AEK71601.1 hypothetical ...	[more]
ALI91605.1	2.4e-20	91.38	Ycf2, partial (chloroplast) [Cordia sebestena]	[more]
ALI91622.1	2.4e-20	91.38	Ycf2, partial (chloroplast) [Nama carnosa]	[more]
APB94752.1	2.4e-20	91.38	hypothetical protein RF2 (plastid) [Daucus pumilus] >APB94769.1 hypothetical pro...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009507	chloroplast

Vocabulary: **INTERPRO**
Term	Definition
IPR008543	Uncharacterised_Ycf2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001680	Bhi05M001680	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PFAM	PF05695	DUF825	coord: 1..59 e-value: 2.5E-28 score: 97.8
IPR008543	Uncharacterised protein family Ycf2	PANTHER	PTHR33078	FAMILY NOT NAMED	coord: 1..58

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G001680	Cucumber (Gy14) v1	cgywgoB403
Bhi05G001680	Cucumber (Gy14) v2	cgybwgoB636
Bhi05G001680	Cucurbita maxima (Rimu)	cmawgoB0117
Bhi05G001680	Cucurbita maxima (Rimu)	cmawgoB0657
Bhi05G001680	Cucurbita moschata (Rifu)	cmowgoB0109
Bhi05G001680	Cucurbita moschata (Rifu)	cmowgoB0658
Bhi05G001680	Cucurbita pepo (Zucchini)	cpewgoB0332
Bhi05G001680	Cucurbita pepo (Zucchini)	cpewgoB0844
Bhi05G001680	Cucurbita pepo (Zucchini)	cpewgoB1027
Bhi05G001680	Wild cucumber (PI 183967)	cpiwgoB676
Bhi05G001680	Cucumber (Chinese Long) v3	cucwgoB690
Bhi05G001680	Cucumber (Chinese Long) v2	cuwgoB665
Bhi05G001680	Bottle gourd (USVL1VR-Ls)	lsiwgoB114
Bhi05G001680	Bottle gourd (USVL1VR-Ls)	lsiwgoB119
Bhi05G001680	Melon (DHL92) v3.6.1	medwgoB224
Bhi05G001680	Melon (DHL92) v3.5.1	mewgoB224
Bhi05G001680	Watermelon (Charleston Gray)	wcgwgoB269
Bhi05G001680	Watermelon (Charleston Gray)	wcgwgoB586
Bhi05G001680	Watermelon (97103) v2	wgowmbB262
Bhi05G001680	Watermelon (97103) v1	wgowmB268
Bhi05G001680	Silver-seed gourd	carwgoB0847
Bhi05G001680	Silver-seed gourd	carwgoB1023