Bhi05G001443 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G001443
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr5 : 54709287 .. 54709610 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTACTCATTCATTCCCTTTTTCCTTTCCTTCGGCGATTCCAGCGGCCACCACTCGCCGCCTCGCTGGCAAACCTCGTGCTGTTCTGACATTCTACTTTCTTTTTGGCTCTTCGTTAGTTCCAAAGGCCACTTTTGCCACGTTGGATCTGTCCCCACTCCACGTCGTCGCCACGTCATCCTTCTGCCAGGTCAACACCGGCCAATCGGCACAGTTTATTCCCATCCCAAGATGCGGATCCCCTGTGTTCATGTCTGCTTCGTGCACCTCACCTACCTCCCCTCACGCTCCTCCCACTTGTTTGCCACGTGGATCACGTTAA

mRNA sequence

ATGTTTACTCATTCATTCCCTTTTTCCTTTCCTTCGGCGATTCCAGCGGCCACCACTCGCCGCCTCGCTGGCAAACCTCGTGCTGTTCTGACATTCTACTTTCTTTTTGGCTCTTCGTTAGTTCCAAAGGCCACTTTTGCCACGTTGGATCTGTCCCCACTCCACGTCGTCGCCACGTCATCCTTCTGCCAGGTCAACACCGGCCAATCGGCACAGTTTATTCCCATCCCAAGATGCGGATCCCCTGTGTTCATGTCTGCTTCGTGCACCTCACCTACCTCCCCTCACGCTCCTCCCACTTGTTTGCCACGTGGATCACGTTAA

Coding sequence (CDS)

ATGTTTACTCATTCATTCCCTTTTTCCTTTCCTTCGGCGATTCCAGCGGCCACCACTCGCCGCCTCGCTGGCAAACCTCGTGCTGTTCTGACATTCTACTTTCTTTTTGGCTCTTCGTTAGTTCCAAAGGCCACTTTTGCCACGTTGGATCTGTCCCCACTCCACGTCGTCGCCACGTCATCCTTCTGCCAGGTCAACACCGGCCAATCGGCACAGTTTATTCCCATCCCAAGATGCGGATCCCCTGTGTTCATGTCTGCTTCGTGCACCTCACCTACCTCCCCTCACGCTCCTCCCACTTGTTTGCCACGTGGATCACGTTAA

Protein sequence

MFTHSFPFSFPSAIPAATTRRLAGKPRAVLTFYFLFGSSLVPKATFATLDLSPLHVVATSSFCQVNTGQSAQFIPIPRCGSPVFMSASCTSPTSPHAPPTCLPRGSR

Homology

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BLAST of Bhi05G001443 vs. TrEMBL
Match: tr|A0A0A0K1E5|A0A0A0K1E5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G017170 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.7e-27
Identity = 74/114 (64.91%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   MFTHS--FPFS-----------FPSAIPAATTRRLAGKPRAVLTFYFLFGSSLVPKATFA 60
           MFT+S  FPF             P AIPAATTRR AGKPRAVLTFYF        +    
Sbjct: 1   MFTNSPFFPFHRRFQRLPPPPFLPPAIPAATTRRFAGKPRAVLTFYFFLALRYFQRPLAT 60

Query: 61  TLDLSPLHVVATSSFCQVNTGQSAQFIPIPRCGSPVFMSASCTSPTSPHAPPTC 102
           +  L P HVV+TSSFCQVNTGQ  QFI IPRCGSPVFMSASCTSPTSPHAPPTC
Sbjct: 61  SDMLPPFHVVSTSSFCQVNTGQ-RQFILIPRCGSPVFMSASCTSPTSPHAPPTC 113

[Close]

BLAST of Bhi05G001443 vs. NCBI nr
Match: KGN43283.1 (hypothetical protein Csa_7G017170 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 5.5e-27
Identity = 74/114 (64.91%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   MFTHS--FPFS-----------FPSAIPAATTRRLAGKPRAVLTFYFLFGSSLVPKATFA 60
           MFT+S  FPF             P AIPAATTRR AGKPRAVLTFYF        +    
Sbjct: 1   MFTNSPFFPFHRRFQRLPPPPFLPPAIPAATTRRFAGKPRAVLTFYFFLALRYFQRPLAT 60

Query: 61  TLDLSPLHVVATSSFCQVNTGQSAQFIPIPRCGSPVFMSASCTSPTSPHAPPTC 102
           +  L P HVV+TSSFCQVNTGQ  QFI IPRCGSPVFMSASCTSPTSPHAPPTC
Sbjct: 61  SDMLPPFHVVSTSSFCQVNTGQ-RQFILIPRCGSPVFMSASCTSPTSPHAPPTC 113

The following BLAST results are available for this feature:

BLAST of Bhi05G001443 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi05G001443 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi05G001443 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K1E5\|A0A0A0K1E5_CUCSA	3.7e-27	64.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G017170 PE=4 SV=1	[more]

BLAST of Bhi05G001443 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43283.1	5.5e-27	64.91	hypothetical protein Csa_7G017170 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001443	Bhi05M001443	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi05G001443	Csa7G017170	Cucumber (Chinese Long) v2	cuwgoB670

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G001443	Cucumber (Gy14) v1	cgywgoB145
Bhi05G001443	Cucumber (Gy14) v2	cgybwgoB641
Bhi05G001443	Cucurbita maxima (Rimu)	cmawgoB0115
Bhi05G001443	Cucurbita maxima (Rimu)	cmawgoB0652
Bhi05G001443	Cucurbita moschata (Rifu)	cmowgoB0115
Bhi05G001443	Cucurbita moschata (Rifu)	cmowgoB0653
Bhi05G001443	Cucurbita pepo (Zucchini)	cpewgoB0326
Bhi05G001443	Cucurbita pepo (Zucchini)	cpewgoB0851
Bhi05G001443	Wild cucumber (PI 183967)	cpiwgoB681
Bhi05G001443	Cucumber (Chinese Long) v3	cucwgoB695
Bhi05G001443	Bottle gourd (USVL1VR-Ls)	lsiwgoB118
Bhi05G001443	Melon (DHL92) v3.6.1	medwgoB213
Bhi05G001443	Melon (DHL92) v3.5.1	mewgoB213
Bhi05G001443	Watermelon (Charleston Gray)	wcgwgoB266
Bhi05G001443	Watermelon (97103) v2	wgowmbB241
Bhi05G001443	Watermelon (97103) v1	wgowmB272
Bhi05G001443	Silver-seed gourd	carwgoB1251
Bhi05G001443	Silver-seed gourd	carwgoB1229