Bhi05G001404 (gene) Wax gourd

NameBhi05G001404
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRetrotransposon gag protein (InterPro:
Locationchr5 : 53617579 .. 53617773 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGAGTTCTTGATTTGAAAGGGAAATTAGAAGCGATGAAAAAGGGGAATATGAAATTAGAGGAATATTTCAAGAAATCCAAAACCCTAGTCGATTCGTTGAAACCAGCTAGAAGAAGAAGAATATCTCATGAAGATCATGTTATGCACATTCTGGCTAGATTGGGTCCGAAATATGATTCCATCGTGTCT

mRNA sequence

ATGGCTCGAGTTCTTGATTTGAAAGGGAAATTAGAAGCGATGAAAAAGGGGAATATGAAATTAGAGGAATATTTCAAGAAATCCAAAACCCTAGTCGATTCGTTGAAACCAGCTAGAAGAAGAAGAATATCTCATGAAGATCATGTTATGCACATTCTGGCTAGATTGGGTCCGAAATATGATTCCATCGTGTCT

Coding sequence (CDS)

ATGGCTCGAGTTCTTGATTTGAAAGGGAAATTAGAAGCGATGAAAAAGGGGAATATGAAATTAGAGGAATATTTCAAGAAATCCAAAACCCTAGTCGATTCGTTGAAACCAGCTAGAAGAAGAAGAATATCTCATGAAGATCATGTTATGCACATTCTGGCTAGATTGGGTCCGAAATATGATTCCATCGTGTCT

Protein sequence

MARVLDLKGKLEAMKKGNMKLEEYFKKSKTLVDSLKPARRRRISHEDHVMHILARLGPKYDSIVS
BLAST of Bhi05G001404 vs. TAIR10
Match: AT1G34070.1 (Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 40.4 bits (93), Expect = 4.9e-04
Identity = 22/64 (34.38%), Postives = 39/64 (60.94%), Query Frame = 0

Query: 2   ARVLDLKGKLEAMKKGNMKLEEYFKKSKTLVDSLKPARRRRISHEDHVMHILARLGPKYD 61
           AR L L  +L     G+M++ +Y++K K L DSL+      ++  + VM++L  L PK+D
Sbjct: 112 ARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNV-DVPVTDRNLVMYVLNGLNPKFD 171

Query: 62  SIVS 66
           +I++
Sbjct: 172 NIIN 174

BLAST of Bhi05G001404 vs. TrEMBL
Match: tr|A0A2H5PGR9|A0A2H5PGR9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_135090 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-04
Identity = 28/64 (43.75%), Postives = 45/64 (70.31%), Query Frame = 0

Query: 2   ARVLDLKGKLEAMKKGNMKLEEYFKKSKTLVDSLKPARRRRISHEDHVMHILARLGPKYD 61
           ARVL L+ +++  KKG   + EY+ K KTL++SL+ A    ++ +D +M +LA LGP+YD
Sbjct: 155 ARVLYLRTQIQTTKKGPSTIHEYYSKMKTLLNSLR-AAGNSMNDDDFIMCVLAGLGPEYD 214

Query: 62  SIVS 66
           S+V+
Sbjct: 215 SVVT 217

BLAST of Bhi05G001404 vs. TrEMBL
Match: tr|A0A2P4LQ31|A0A2P4LQ31_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_37452 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.5e-04
Identity = 27/64 (42.19%), Postives = 42/64 (65.62%), Query Frame = 0

Query: 2  ARVLDLKGKLEAMKKGNMKLEEYFKKSKTLVDSLKPARRRRISHEDHVMHILARLGPKYD 61
          AR++ LK +L+  KKGN+ + +Y +K K+L DSL  A  + I   D ++HIL  L P+Y+
Sbjct: 8  ARIMQLKLELQTTKKGNLSMTDYLQKIKSLADSL-AAAAQPIPEPDLILHILGGLSPEYE 67

Query: 62 SIVS 66
          S V+
Sbjct: 68 SFVT 70

BLAST of Bhi05G001404 vs. TrEMBL
Match: tr|A0A2P5AY04|A0A2P5AY04_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_338080 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.9e-04
Identity = 26/63 (41.27%), Postives = 41/63 (65.08%), Query Frame = 0

Query: 2  ARVLDLKGKLEAMKKGNMKLEEYFKKSKTLVDSLKPARRRRISHEDHVMHILARLGPKYD 61
          A+++  K +L+ +KKG M + EY  K K+  D L  A    +S ED ++++LARLG +YD
Sbjct: 32 AKIMQYKLQLQTLKKGGMSMREYLLKMKSAADVLASA-GHVVSEEDQILYVLARLGIEYD 91

Query: 62 SIV 65
          S+V
Sbjct: 92 SVV 93

BLAST of Bhi05G001404 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 8.9e-12
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 0

Query: 1   MARVLDLKGKLEAMKKGNMKLEEYFKKSKTLVDSLKPARRRRISHEDHVMHILARLGPKY 60
           +ARV+ LK KLE MKKG+M L+ YF K K LVDSL  A  +R+  +DH+MHILARLGP++
Sbjct: 112 LARVMQLKSKLENMKKGSMNLKNYFLKIKNLVDSLATA-GKRLPTDDHIMHILARLGPEF 171

Query: 61  DSIVS 66
           DSIVS
Sbjct: 172 DSIVS 175

BLAST of Bhi05G001404 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-10
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 0

Query: 1   MARVLDLKGKLEAMKKGNMKLEEYFKKSKTLVDSLKPARRRRISHEDHVMHILARLGPKY 60
           +ARV+ LK KLE  KKGN+ L++YF K K LVDSL  A  +++S EDH+MHILA LGP++
Sbjct: 135 LARVMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIA-GKKLSTEDHIMHILAGLGPEF 194

Query: 61  DSIVS 66
           D+I+S
Sbjct: 195 DAIIS 198

BLAST of Bhi05G001404 vs. NCBI nr
Match: XP_022136883.1 (dr1-associated corepressor homolog isoform X2 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 4.6e-08
Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = 0

Query: 1   MARVLDLKGKLEAMKKGNMKLEEYFKKSKTLVDSLKPARRRRISHEDHVMHILARLGPKY 60
           +ARV+ LK KLE +KKGN+ L++YF+K K LVDSL  A  ++++ EDH+MHIL  L  ++
Sbjct: 45  LARVMQLKSKLENIKKGNLPLKDYFQKVKALVDSL-AAAGKKVTVEDHIMHILTGLRSEF 104

Query: 61  DSIVS 66
           +S VS
Sbjct: 105 ESTVS 108

BLAST of Bhi05G001404 vs. NCBI nr
Match: XP_022136882.1 (dr1-associated corepressor homolog isoform X1 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 4.6e-08
Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = 0

Query: 1   MARVLDLKGKLEAMKKGNMKLEEYFKKSKTLVDSLKPARRRRISHEDHVMHILARLGPKY 60
           +ARV+ LK KLE +KKGN+ L++YF+K K LVDSL  A  ++++ EDH+MHIL  L  ++
Sbjct: 45  LARVMQLKSKLENIKKGNLPLKDYFQKVKALVDSL-AAAGKKVTVEDHIMHILTGLRSEF 104

Query: 61  DSIVS 66
           +S VS
Sbjct: 105 ESTVS 108

BLAST of Bhi05G001404 vs. NCBI nr
Match: XP_022158089.1 (uncharacterized protein LOC111024658 [Momordica charantia])

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-06
Identity = 30/65 (46.15%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 1  MARVLDLKGKLEAMKKGNMKLEEYFKKSKTLVDSLKPARRRRISHEDHVMHILARLGPKY 60
          + +V+ LK +L+ ++KG + L+EY ++ K LVDSLK A  + ++ EDH+MHIL+ LG +Y
Sbjct: 31 LTKVMQLKTQLQNLRKGGLSLKEYIRQIKNLVDSLK-AAGKSMNTEDHIMHILSGLGSEY 90

Query: 61 DSIVS 66
          +S VS
Sbjct: 91 ESTVS 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT1G34070.14.9e-0434.38Retrotransposon gag protein (InterPro:IPR005162)[more]
Match NameE-valueIdentityDescription
tr|A0A2H5PGR9|A0A2H5PGR9_CITUN1.6e-0443.75Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_135090 PE=4 SV=1[more]
tr|A0A2P4LQ31|A0A2P4LQ31_QUESU4.5e-0442.19Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_37452 PE=4 SV=1[more]
tr|A0A2P5AY04|A0A2P5AY04_9ROSA5.9e-0441.27Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_338080 PE=4 S... [more]
Match NameE-valueIdentityDescription
XP_022156747.18.9e-1263.08uncharacterized protein LOC111023586 [Momordica charantia][more]
XP_022154487.12.9e-1058.46uncharacterized protein LOC111021757 [Momordica charantia][more]
XP_022136883.14.6e-0852.31dr1-associated corepressor homolog isoform X2 [Momordica charantia][more]
XP_022136882.14.6e-0852.31dr1-associated corepressor homolog isoform X1 [Momordica charantia][more]
XP_022158089.12.5e-0646.15uncharacterized protein LOC111024658 [Momordica charantia][more]

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi05M001404Bhi05M001404mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 2..65
e-value: 2.3E-6
score: 27.2