Bhi05G001402 (gene) Wax gourd

NameBhi05G001402
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionExpansin-like
Locationchr5 : 53517846 .. 53518112 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGTGGAAAAGGTGAATACAGGAAGAACGGCGTTCATGACCAGAAGACATGGGACGGCAGTGTGGGAAATCGACACGGTGCCGGAGGCGGCAGTGATGTTTCAGATAAGGGTGATTTCGGGGTTCGATGGGATGTGGATCAATGCGGAGCGGGCGGTTCCGGCGGACTGGAAGCCAGGGATGATCTACGACCTTGGAGTTCAGATAGATACCATTGCCAAAGGACAAGAGAACTGCACAAAGTGTGATGAAGGGCATTGGTGA

mRNA sequence

ATGTTGGTGGAAAAGGTGAATACAGGAAGAACGGCGTTCATGACCAGAAGACATGGGACGGCAGTGTGGGAAATCGACACGGTGCCGGAGGCGGCAGTGATGTTTCAGATAAGGGTGATTTCGGGGTTCGATGGGATGTGGATCAATGCGGAGCGGGCGGTTCCGGCGGACTGGAAGCCAGGGATGATCTACGACCTTGGAGTTCAGATAGATACCATTGCCAAAGGACAAGAGAACTGCACAAAGTGTGATGAAGGGCATTGGTGA

Coding sequence (CDS)

ATGTTGGTGGAAAAGGTGAATACAGGAAGAACGGCGTTCATGACCAGAAGACATGGGACGGCAGTGTGGGAAATCGACACGGTGCCGGAGGCGGCAGTGATGTTTCAGATAAGGGTGATTTCGGGGTTCGATGGGATGTGGATCAATGCGGAGCGGGCGGTTCCGGCGGACTGGAAGCCAGGGATGATCTACGACCTTGGAGTTCAGATAGATACCATTGCCAAAGGACAAGAGAACTGCACAAAGTGTGATGAAGGGCATTGGTGA

Protein sequence

MLVEKVNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAVPADWKPGMIYDLGVQIDTIAKGQENCTKCDEGHW
BLAST of Bhi05G001402 vs. Swiss-Prot
Match: sp|Q9SVE5|EXLA2_ARATH (Expansin-like A2 OS=Arabidopsis thaliana OX=3702 GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.1e-15
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 0

Query: 3   VEKVNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAVPADWKPGM 62
           + +V +   ++MTR HG AVW  D VP  A+ F+  V +G+DG  + ++R +PA+W+ G 
Sbjct: 182 IAQVGSSHWSYMTRSHG-AVWVTDKVPNGALQFRFVVTAGYDGKMVWSQRVLPANWEAGK 241

Query: 63  IYDLGVQIDTIAKGQENCTKCDEGHW 89
            YD GVQI  IA  QE C  CD+  W
Sbjct: 242 SYDAGVQITDIA--QEGCDPCDDHIW 264

BLAST of Bhi05G001402 vs. Swiss-Prot
Match: sp|Q9LZT5|EXLA3_ARATH (Expansin-like A3 OS=Arabidopsis thaliana OX=3702 GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-13
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 3   VEKVNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAVPADWKPGM 62
           +  V + + ++M+R HG AVW  D VP  A+ F+  V  G+DG  + ++R +PA+W  G 
Sbjct: 181 IAPVGSSQWSYMSRSHG-AVWATDKVPTGALQFKFTVTGGYDGKTVWSKRVLPANWNSGR 240

Query: 63  IYDLGVQIDTIAKGQENCTKCDEGH 88
           IYD GVQI  IA  QE C  C  GH
Sbjct: 241 IYDAGVQITDIA--QEGCDTC--GH 260

BLAST of Bhi05G001402 vs. Swiss-Prot
Match: sp|Q8H274|EXLA3_ORYSJ (Expansin-like A3 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-12
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 0

Query: 3   VEKVNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAV-PADWKPG 62
           V +V +    FMTR +G  VW ID  P   + F+  V  G+DG W+ A+R V PA+W+PG
Sbjct: 192 VAQVGSSDWRFMTRVYG-PVWSIDRAPNGPLQFRAVVTGGYDGKWVWADREVLPANWQPG 251

Query: 63  MIYDLGVQIDTIAKGQENCTKCDEGHW 89
            +YD G +I  +A+  E+C  C    W
Sbjct: 252 QVYDTGARIADVAR--ESCLDCATLDW 275

BLAST of Bhi05G001402 vs. Swiss-Prot
Match: sp|Q10S70|EXLA1_ORYSJ (Expansin-like A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-12
Identity = 35/87 (40.23%), Postives = 47/87 (54.02%), Query Frame = 0

Query: 3   VEKVNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAV-PADWKPG 62
           V +V +    FMTR HG + W +   P   +  ++ V  G+DG W+ A+R V P  W+ G
Sbjct: 195 VAQVGSSSWKFMTREHGPS-WSMANAPPGPLQMRLVVTGGYDGKWVWADREVLPRRWRAG 254

Query: 63  MIYDLGVQIDTIAKGQENCTKCDEGHW 89
            +YD GVQI  IA  QE C  CD   W
Sbjct: 255 EVYDTGVQITDIA--QEGCFPCDTHEW 278

BLAST of Bhi05G001402 vs. TAIR10
Match: AT4G38400.1 (expansin-like A2)

HSP 1 Score: 81.3 bits (199), Expect = 3.4e-16
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 0

Query: 3   VEKVNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAVPADWKPGM 62
           + +V +   ++MTR HG AVW  D VP  A+ F+  V +G+DG  + ++R +PA+W+ G 
Sbjct: 182 IAQVGSSHWSYMTRSHG-AVWVTDKVPNGALQFRFVVTAGYDGKMVWSQRVLPANWEAGK 241

Query: 63  IYDLGVQIDTIAKGQENCTKCDEGHW 89
            YD GVQI  IA  QE C  CD+  W
Sbjct: 242 SYDAGVQITDIA--QEGCDPCDDHIW 264

BLAST of Bhi05G001402 vs. TAIR10
Match: AT3G45960.2 (expansin-like A3)

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-14
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 3   VEKVNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAVPADWKPGM 62
           +  V + + ++M+R HG AVW  D VP  A+ F+  V  G+DG  + ++R +PA+W  G 
Sbjct: 181 IAPVGSSQWSYMSRSHG-AVWATDKVPTGALQFKFTVTGGYDGKTVWSKRVLPANWNSGR 240

Query: 63  IYDLGVQIDTIAKGQENCTKCDEGH 88
           IYD GVQI  IA  QE C  C  GH
Sbjct: 241 IYDAGVQITDIA--QEGCDTC--GH 260

BLAST of Bhi05G001402 vs. TrEMBL
Match: tr|A0A0A0K640|A0A0A0K640_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G018830 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-38
Identity = 75/88 (85.23%), Postives = 79/88 (89.77%), Query Frame = 0

Query: 1  MLVEKVNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAVPADWKP 60
          MLV KVN GRTAFM+RRHGTAVWEID +PE AVMFQIRVISGFDGMWI AER VPADWKP
Sbjct: 1  MLVLKVNGGRTAFMSRRHGTAVWEIDMMPEKAVMFQIRVISGFDGMWIRAERVVPADWKP 60

Query: 61 GMIYDLGVQIDTIAKGQENCTKCDEGHW 89
          GMIYDLGVQ D IAKGQE+C +CDEGHW
Sbjct: 61 GMIYDLGVQTDAIAKGQESCKQCDEGHW 88

BLAST of Bhi05G001402 vs. TrEMBL
Match: tr|A0A1S3BIH4|A0A1S3BIH4_CUCME (expansin-like A3 OS=Cucumis melo OX=3656 GN=LOC103490243 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-36
Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = 0

Query: 6   VNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAVPADWKPGMIYD 65
           VN GRTAFM+RRHGT VWEIDT+PE AVMFQ+RVISGFDGMWI AER VP DWKPGMIYD
Sbjct: 181 VNGGRTAFMSRRHGTGVWEIDTMPEEAVMFQMRVISGFDGMWIRAERVVPPDWKPGMIYD 240

Query: 66  LGVQIDTIAKGQENCTKCDEGHW 89
           LGVQID IAKGQE+C +CDEGHW
Sbjct: 241 LGVQIDAIAKGQESCKQCDEGHW 263

BLAST of Bhi05G001402 vs. TrEMBL
Match: tr|B9HQZ5|B9HQZ5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G083400v3 PE=3 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 7.4e-18
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 1   MLVEKVNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAVPADWKP 60
           M V KV +    FM+R HG AVW+ D VP  A+ F+  V +GFDG WI A++ +P DWKP
Sbjct: 189 MDVAKVGSSNWGFMSRNHG-AVWDTDRVPAGALQFRFVVTAGFDGKWIWAQKVLPEDWKP 248

Query: 61  GMIYDLGVQIDTIAKGQENCTKCDEGHW 89
           GM YD GVQI  IA  QE C+ C +G W
Sbjct: 249 GMTYDSGVQITDIA--QEGCSPCGDGIW 273

BLAST of Bhi05G001402 vs. TrEMBL
Match: tr|A0A2K1Z7R5|A0A2K1Z7R5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G141400v3 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.4e-18
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 1   MLVEKVNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAVPADWKP 60
           M V KV +    FM+R HG AVW+ D VP  A+ F+  V +GFDG WI A++ +P DWKP
Sbjct: 174 MDVAKVGSSNWGFMSRNHG-AVWDTDRVPAGALQFRFVVTAGFDGKWIWAQKVLPEDWKP 233

Query: 61  GMIYDLGVQIDTIAKGQENCTKCDEGHW 89
           GM YD GVQI  IA  QE C+ C +G W
Sbjct: 234 GMTYDSGVQITDIA--QEGCSPCGDGIW 258

BLAST of Bhi05G001402 vs. TrEMBL
Match: tr|A9PAL4|A9PAL4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G181700v3 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 0

Query: 5   KVNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAVPADWKPGMIY 64
           KV +    FM+R HG AVW+ D VP  A+ F+  + +GFDG WI A   +P DWKPGM Y
Sbjct: 178 KVGSSNWGFMSRNHG-AVWDSDRVPSGALQFRFVITAGFDGKWIWARNVLPEDWKPGMTY 237

Query: 65  DLGVQIDTIAKGQENCTKCDEGHW 89
           D GVQI  IA  QE C+ CD+G W
Sbjct: 238 DSGVQITDIA--QEGCSPCDDGIW 258

BLAST of Bhi05G001402 vs. NCBI nr
Match: KGN43301.1 (hypothetical protein Csa_7G018830 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 2.0e-38
Identity = 75/88 (85.23%), Postives = 79/88 (89.77%), Query Frame = 0

Query: 1  MLVEKVNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAVPADWKP 60
          MLV KVN GRTAFM+RRHGTAVWEID +PE AVMFQIRVISGFDGMWI AER VPADWKP
Sbjct: 1  MLVLKVNGGRTAFMSRRHGTAVWEIDMMPEKAVMFQIRVISGFDGMWIRAERVVPADWKP 60

Query: 61 GMIYDLGVQIDTIAKGQENCTKCDEGHW 89
          GMIYDLGVQ D IAKGQE+C +CDEGHW
Sbjct: 61 GMIYDLGVQTDAIAKGQESCKQCDEGHW 88

BLAST of Bhi05G001402 vs. NCBI nr
Match: XP_011658619.1 (PREDICTED: expansin-like A3 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 1.4e-36
Identity = 71/83 (85.54%), Postives = 75/83 (90.36%), Query Frame = 0

Query: 6   VNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAVPADWKPGMIYD 65
           VN GRTAFM+RRHGTAVWEID +PE AVMFQIRVISGFDGMWI AER VPADWKPGMIYD
Sbjct: 181 VNGGRTAFMSRRHGTAVWEIDMMPEKAVMFQIRVISGFDGMWIRAERVVPADWKPGMIYD 240

Query: 66  LGVQIDTIAKGQENCTKCDEGHW 89
           LGVQ D IAKGQE+C +CDEGHW
Sbjct: 241 LGVQTDAIAKGQESCKQCDEGHW 263

BLAST of Bhi05G001402 vs. NCBI nr
Match: XP_008447894.1 (PREDICTED: expansin-like A3 [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 1.8e-36
Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = 0

Query: 6   VNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAVPADWKPGMIYD 65
           VN GRTAFM+RRHGT VWEIDT+PE AVMFQ+RVISGFDGMWI AER VP DWKPGMIYD
Sbjct: 181 VNGGRTAFMSRRHGTGVWEIDTMPEEAVMFQMRVISGFDGMWIRAERVVPPDWKPGMIYD 240

Query: 66  LGVQIDTIAKGQENCTKCDEGHW 89
           LGVQID IAKGQE+C +CDEGHW
Sbjct: 241 LGVQIDAIAKGQESCKQCDEGHW 263

BLAST of Bhi05G001402 vs. NCBI nr
Match: XP_023529769.1 (expansin-like A2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.5 bits (402), Expect = 5.4e-36
Identity = 68/83 (81.93%), Postives = 76/83 (91.57%), Query Frame = 0

Query: 6   VNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAVPADWKPGMIYD 65
           V++G T FM+RRHGTAVWEIDT PEAAV+FQ+RVISGFDGMW+ AER VPADWKPGMIYD
Sbjct: 182 VDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGFDGMWVTAERVVPADWKPGMIYD 241

Query: 66  LGVQIDTIAKGQENCTKCDEGHW 89
           LGVQ+D IAKGQE+C KCDEGHW
Sbjct: 242 LGVQMDAIAKGQESCRKCDEGHW 264

BLAST of Bhi05G001402 vs. NCBI nr
Match: XP_022928449.1 (expansin-like A2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 158.3 bits (399), Expect = 1.2e-35
Identity = 68/83 (81.93%), Postives = 75/83 (90.36%), Query Frame = 0

Query: 6   VNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAVPADWKPGMIYD 65
           V+ G T FM+RRHGTAVWEIDT PEAAV+FQ+RVISGFDGMW+ AER VPADWKPGMIYD
Sbjct: 181 VDWGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGFDGMWVTAERVVPADWKPGMIYD 240

Query: 66  LGVQIDTIAKGQENCTKCDEGHW 89
           LGVQ+D IAKGQE+C KCDEGHW
Sbjct: 241 LGVQMDAIAKGQESCRKCDEGHW 263

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
sp|Q9SVE5|EXLA2_ARATH6.1e-1543.02Expansin-like A2 OS=Arabidopsis thaliana OX=3702 GN=EXLA2 PE=2 SV=1[more]
sp|Q9LZT5|EXLA3_ARATH2.6e-1343.53Expansin-like A3 OS=Arabidopsis thaliana OX=3702 GN=EXLA3 PE=2 SV=1[more]
sp|Q8H274|EXLA3_ORYSJ1.7e-1240.23Expansin-like A3 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA3 PE=2 SV=1[more]
sp|Q10S70|EXLA1_ORYSJ2.8e-1240.23Expansin-like A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT4G38400.13.4e-1643.02expansin-like A2[more]
AT3G45960.21.4e-1443.53expansin-like A3[more]
Match NameE-valueIdentityDescription
tr|A0A0A0K640|A0A0A0K640_CUCSA1.3e-3885.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G018830 PE=4 SV=1[more]
tr|A0A1S3BIH4|A0A1S3BIH4_CUCME1.2e-3684.34expansin-like A3 OS=Cucumis melo OX=3656 GN=LOC103490243 PE=3 SV=1[more]
tr|B9HQZ5|B9HQZ5_POPTR7.4e-1852.27Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G083400v3 PE=... [more]
tr|A0A2K1Z7R5|A0A2K1Z7R5_POPTR7.4e-1852.27Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G141400v3 PE=... [more]
tr|A9PAL4|A9PAL4_POPTR1.7e-1752.38Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G181700v3 PE=... [more]
Match NameE-valueIdentityDescription
KGN43301.12.0e-3885.23hypothetical protein Csa_7G018830 [Cucumis sativus][more]
XP_011658619.11.4e-3685.54PREDICTED: expansin-like A3 [Cucumis sativus][more]
XP_008447894.11.8e-3684.34PREDICTED: expansin-like A3 [Cucumis melo][more]
XP_023529769.15.4e-3681.93expansin-like A2 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022928449.11.2e-3581.93expansin-like A2 isoform X1 [Cucurbita moschata][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007117Expansin_CBD
IPR036749Expansin_CBD_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi05M001402Bhi05M001402mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036749Expansin, cellulose-binding-like domain superfamilyGENE3DG3DSA:2.60.40.760coord: 1..71
e-value: 2.0E-12
score: 48.8
IPR036749Expansin, cellulose-binding-like domain superfamilySUPERFAMILYSSF49590PHL pollen allergencoord: 6..65
NoneNo IPR availablePANTHERPTHR31692:SF4EXPANSIN-LIKE A1-RELATEDcoord: 3..76
NoneNo IPR availablePANTHERPTHR31692FAMILY NOT NAMEDcoord: 3..76
IPR007117Expansin, cellulose-binding-like domainPROSITEPS50843EXPANSIN_CBDcoord: 1..66
score: 10.968