Bhi05G001254 (gene) Wax gourd

Overview
NameBhi05G001254
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr5 : 50091188 .. 50091800 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTGGCTTCTTTCATCCTTCCATAAATACATATGAAATCCTCCAAAACTTCTCATCTCATCTCTCCAAATACTTTATTTTCTAACCTATAAGAAAATGAGGTCCAAGCCTTTCATCTTCCTCGGTTTACTTTTCGCCGTCATCCTCCTTTTCTCCTCGGAGGAGGTAATGGTTACGGCAAGGGACGTGAGAATGAGTGAGTTTCATTTTCACACCTTCATTTGACAATGTAATGTCTTTACTTTTATTCGTTTAATTTATGTCATTTATGTTGATTTTAATGATAACATAGTAGAAGAAGCTATGATGGAAACCGGAGGAGTTGATAACGTCAAGCGCAGCGGTTTCAGAGGCAGACGTTTTAGATTTGGTGGTGGAGGCCACCATGGACAGGACCATTGCCACCACGGTTGTTGTCACCACCACCATGGCAGTTGCAGCAGGTGCTGCAGCTTTGCTGGTGAGGCTGTTGATGAACAGCCCCAAGCCAAACCTAACTACTAACCACACTTTGTTGTTTCAAAGTTCAAATAAAAACTTTCTGATGTATTAGTACAAAAGGGGGGTTAGTTAATCTCTTCTAGCTTGAGATTAATTGTGTAGTTGAAGCTT

mRNA sequence

CTTCTGGCTTCTTTCATCCTTCCATAAATACATATGAAATCCTCCAAAACTTCTCATCTCATCTCTCCAAATACTTTATTTTCTAACCTATAAGAAAATGAGGTCCAAGCCTTTCATCTTCCTCGGTTTACTTTTCGCCGTCATCCTCCTTTTCTCCTCGGAGGAGGTAATGGTTACGGCAAGGGACGTGAGAATGAAAGAAGCTATGATGGAAACCGGAGGAGTTGATAACGTCAAGCGCAGCGGTTTCAGAGGCAGACGTTTTAGATTTGGTGGTGGAGGCCACCATGGACAGGACCATTGCCACCACGGTTGTTGTCACCACCACCATGGCAGTTGCAGCAGGTGCTGCAGCTTTGCTGGTGAGGCTGTTGATGAACAGCCCCAAGCCAAACCTAACTACTAACCACACTTTGTTGTTTCAAAGTTCAAATAAAAACTTTCTGATGTATTAGTACAAAAGGGGGGTTAGTTAATCTCTTCTAGCTTGAGATTAATTGTGTAGTTGAAGCTT

Coding sequence (CDS)

ATGAGGTCCAAGCCTTTCATCTTCCTCGGTTTACTTTTCGCCGTCATCCTCCTTTTCTCCTCGGAGGAGGTAATGGTTACGGCAAGGGACGTGAGAATGAAAGAAGCTATGATGGAAACCGGAGGAGTTGATAACGTCAAGCGCAGCGGTTTCAGAGGCAGACGTTTTAGATTTGGTGGTGGAGGCCACCATGGACAGGACCATTGCCACCACGGTTGTTGTCACCACCACCATGGCAGTTGCAGCAGGTGCTGCAGCTTTGCTGGTGAGGCTGTTGATGAACAGCCCCAAGCCAAACCTAACTACTAA

Protein sequence

MRSKPFIFLGLLFAVILLFSSEEVMVTARDVRMKEAMMETGGVDNVKRSGFRGRRFRFGGGGHHGQDHCHHGCCHHHHGSCSRCCSFAGEAVDEQPQAKPNY
Homology
[Close]
BLAST of Bhi05G001254 vs. TrEMBL
Match: tr|A0A0A0K5A1|A0A0A0K5A1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.3e-13
Identity = 53/103 (51.46%), Postives = 60/103 (58.25%), Query Frame = 0 

Query: 1   MRSKPFIFLGLLFAVILLFSSEEVMVTARDVRMKEAMMETGGVDNVKRSGFRGRRFRFGG 60
           M SK FI LGLLFAV+ LFSSE + VTARD ++KEA METG VDNV+R  + G   R   
Sbjct: 1   MSSKSFILLGLLFAVV-LFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSR--- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXRCCSFAGEA--VDEQPQAKPN 102
                                 RCCSFAGEA  VD +PQAKPN
Sbjct: 61  NLAECLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPN 99

[Close]
BLAST of Bhi05G001254 vs. NCBI nr
Match: XP_004144531.1 (PREDICTED: glycine-rich protein-like [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_7G037560 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 53/103 (51.46%), Postives = 60/103 (58.25%), Query Frame = 0 

Query: 1   MRSKPFIFLGLLFAVILLFSSEEVMVTARDVRMKEAMMETGGVDNVKRSGFRGRRFRFGG 60
           M SK FI LGLLFAV+ LFSSE + VTARD ++KEA METG VDNV+R  + G   R   
Sbjct: 1   MSSKSFILLGLLFAVV-LFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSR--- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXRCCSFAGEA--VDEQPQAKPN 102
                                 RCCSFAGEA  VD +PQAKPN
Sbjct: 61  NLAECLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPN 99

[Close]
BLAST of Bhi05G001254 vs. NCBI nr
Match: XP_022136254.1 (glycine-rich protein 3 short isoform-like [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 5.7e-05
Identity = 66/127 (51.97%), Postives = 79/127 (62.20%), Query Frame = 0 

Query: 1   MRSKPFIFLGLLFAVILLFSSEEVMVTARDVRMKEAMMETGGVDNVKRSGFRGRRFRFGG 60
           M SK FI LGLLFAV++L SS+   VTARD++  E +MET GV++ K   +      +GG
Sbjct: 1   MNSKAFILLGLLFAVVVLLSSD---VTARDLK-GETVMETDGVEDAKDRSYDRGHGHYGG 60

Query: 61  --------------------------XXXXXXXXXXXXXXXXXXXXXXRCCSFAGEAVDE 102
                                     XXXXXXXXXXXXXXXXXXXXXXRCCS+AGEAVD 
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCCSYAGEAVDV 120

The following BLAST results are available for this feature:
BLAST of Bhi05G001254 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi05G001254 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi05G001254 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K5A1|A0A0A0K5A1_CUCSA8.3e-1351.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1[more]
BLAST of Bhi05G001254 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144531.11.3e-1251.46PREDICTED: glycine-rich protein-like [Cucumis sativus] >KGN43452.1 hypothetical ... [more]
XP_022136254.15.7e-0551.97glycine-rich protein 3 short isoform-like [Momordica charantia][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010800GRP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi05M001254Bhi05M001254mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010800Glycine rich proteinPFAMPF07172GRPcoord: 1..78
e-value: 2.5E-8
score: 34.4
NoneNo IPR availablePANTHERPTHR37389:SF3FUNGUS-INDUCED PROTEINcoord: 1..100
NoneNo IPR availablePANTHERPTHR37389FAMILY NOT NAMEDcoord: 1..100

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi05G001254Wax gourdwgowgoB070
Bhi05G001254Cucumber (Gy14) v1cgywgoB371
Bhi05G001254Cucumber (Gy14) v2cgybwgoB640
Bhi05G001254Cucumber (Gy14) v2cgybwgoB641
Bhi05G001254Cucurbita maxima (Rimu)cmawgoB0115
Bhi05G001254Cucurbita maxima (Rimu)cmawgoB0652
Bhi05G001254Cucurbita moschata (Rifu)cmowgoB0116
Bhi05G001254Cucurbita moschata (Rifu)cmowgoB0653
Bhi05G001254Cucurbita pepo (Zucchini)cpewgoB0326
Bhi05G001254Cucurbita pepo (Zucchini)cpewgoB0349
Bhi05G001254Cucurbita pepo (Zucchini)cpewgoB0852
Bhi05G001254Wild cucumber (PI 183967)cpiwgoB150
Bhi05G001254Wild cucumber (PI 183967)cpiwgoB680
Bhi05G001254Wild cucumber (PI 183967)cpiwgoB681
Bhi05G001254Cucumber (Chinese Long) v3cucwgoB158
Bhi05G001254Cucumber (Chinese Long) v3cucwgoB694
Bhi05G001254Cucumber (Chinese Long) v3cucwgoB695
Bhi05G001254Cucumber (Chinese Long) v2cuwgoB151
Bhi05G001254Cucumber (Chinese Long) v2cuwgoB669
Bhi05G001254Cucumber (Chinese Long) v2cuwgoB670
Bhi05G001254Bottle gourd (USVL1VR-Ls)lsiwgoB064
Bhi05G001254Bottle gourd (USVL1VR-Ls)lsiwgoB118
Bhi05G001254Melon (DHL92) v3.6.1medwgoB108
Bhi05G001254Melon (DHL92) v3.6.1medwgoB212
Bhi05G001254Melon (DHL92) v3.5.1mewgoB107
Bhi05G001254Melon (DHL92) v3.5.1mewgoB212
Bhi05G001254Watermelon (Charleston Gray)wcgwgoB266
Bhi05G001254Watermelon (97103) v2wgowmbB241
Bhi05G001254Watermelon (97103) v2wgowmbB256
Bhi05G001254Watermelon (97103) v1wgowmB272
Bhi05G001254Silver-seed gourdcarwgoB0251
Bhi05G001254Silver-seed gourdcarwgoB0429
Bhi05G001254Silver-seed gourdcarwgoB1253