Bhi05G001239 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G001239
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Location	chr5 : 49403783 .. 49403941 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATCCATAAAAACTTCTTTCGAGGGAAATGGCAGAACCGGGTCATTTTCGAGAACAATAGATAAAGGTCTGATAGCTACCACTTGGATCTGGAACCTTCATGCTGATGCTCACGATTTCGATAGCCATACTAGTGATTTGGAGGAGATCTCTCGAAAA

mRNA sequence

AGATCCATAAAAACTTCTTTCGAGGGAAATGGCAGAACCGGGTCATTTTCGAGAACAATAGATAAAGGTCTGATAGCTACCACTTGGATCTGGAACCTTCATGCTGATGCTCACGATTTCGATAGCCATACTAGTGATTTGGAGGAGATCTCTCGAAAA

Coding sequence (CDS)

AGATCCATAAAAACTTCTTTCGAGGGAAATGGCAGAACCGGGTCATTTTCGAGAACAATAGATAAAGGTCTGATAGCTACCACTTGGATCTGGAACCTTCATGCTGATGCTCACGATTTCGATAGCCATACTAGTGATTTGGAGGAGATCTCTCGAAAA

Protein sequence

RSIKTSFEGNGRTGSFSRTIDKGLIATTWIWNLHADAHDFDSHTSDLEEISRK

Homology

[Close]

BLAST of Bhi05G001239 vs. Swiss-Prot
Match: sp|Q3V534|PSAA_ACOCL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Acorus calamus OX=4465 GN=psaA PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 6.7e-17
Identity = 42/51 (82.35%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 3  IKTSFEGNGRTGSFSRTIDKGLIATTWIWNLHADAHDFDSHTSDLEEISRK 54
          IKTSFE   R G FSRTI KG   TTWIWNLHADAHDFDSHTSDLEEISRK
Sbjct: 19 IKTSFEAWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRK 69

[Close]

BLAST of Bhi05G001239 vs. Swiss-Prot
Match: sp|Q2QD89|PSAA_CUCSA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psaA PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 8.7e-17
Identity = 42/51 (82.35%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 3  IKTSFEGNGRTGSFSRTIDKGLIATTWIWNLHADAHDFDSHTSDLEEISRK 54
          IKTSFE   R G FSRTI KG   TTWIWNLHADAHDFDSHTSDLEEISRK
Sbjct: 19 IKTSFEDWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRK 69

[Close]

BLAST of Bhi05G001239 vs. Swiss-Prot
Match: sp|Q70Y03|PSAA_AMBTC (Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda OX=13333 GN=psaA PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-16
Identity = 42/51 (82.35%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 3  IKTSFEGNGRTGSFSRTIDKGLIATTWIWNLHADAHDFDSHTSDLEEISRK 54
          IKTSFE   R G FSRTI KG   TTWIWNLHADAHDFDSHTSDLEEISRK
Sbjct: 19 IKTSFEEWARPGHFSRTIAKGPNTTTWIWNLHADAHDFDSHTSDLEEISRK 69

[Close]

BLAST of Bhi05G001239 vs. Swiss-Prot
Match: sp|Q7YJX2|PSAA_CALFG (Photosystem I P700 chlorophyll a apoprotein A1 OS=Calycanthus floridus var. glaucus OX=212734 GN=psaA PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-16
Identity = 42/51 (82.35%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 3  IKTSFEGNGRTGSFSRTIDKGLIATTWIWNLHADAHDFDSHTSDLEEISRK 54
          IKTSFE   R G FSRTI KG   TTWIWNLHADAHDFDSHTSDLEEISRK
Sbjct: 19 IKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRK 69

[Close]

BLAST of Bhi05G001239 vs. Swiss-Prot
Match: sp|Q1KXV9|PSAA_HELAN (Photosystem I P700 chlorophyll a apoprotein A1 OS=Helianthus annuus OX=4232 GN=psaA PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-16
Identity = 42/51 (82.35%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 3  IKTSFEGNGRTGSFSRTIDKGLIATTWIWNLHADAHDFDSHTSDLEEISRK 54
          IKTSFE   R G FSRTI KG   TTWIWNLHADAHDFDSHTSDLEEISRK
Sbjct: 19 IKTSFEEWARPGHFSRTIAKGPETTTWIWNLHADAHDFDSHTSDLEEISRK 69

[Close]

BLAST of Bhi05G001239 vs. TAIR10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 85.1 bits (209), Expect = 1.4e-17
Identity = 41/51 (80.39%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 3  IKTSFEGNGRTGSFSRTIDKGLIATTWIWNLHADAHDFDSHTSDLEEISRK 54
          IKTSFE   + G FSRTI KG   TTWIWNLHADAHDFDSHTSDLEEISRK
Sbjct: 19 IKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRK 69

[Close]

BLAST of Bhi05G001239 vs. TrEMBL
Match: tr|A0A1Z2RQP9|A0A1Z2RQP9_9MAGN (Photosystem I P700 chlorophyll a apoprotein A1 OS=Viscum coloratum OX=159976 GN=psaA PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.6e-15
Identity = 43/51 (84.31%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 3  IKTSFEGNGRTGSFSRTIDKGLIATTWIWNLHADAHDFDSHTSDLEEISRK 54
          IKTSFE  GR G FSRTI KG   TTWIWNLHADAHDFDSHTSDLEEISRK
Sbjct: 19 IKTSFEEWGRPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRK 69

[Close]

BLAST of Bhi05G001239 vs. TrEMBL
Match: tr|D3WCK8|D3WCK8_PHOLC (Photosystem I P700 chlorophyll a apoprotein A1 OS=Phoradendron leucarpum OX=3970 GN=psaA PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.6e-15
Identity = 43/51 (84.31%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 3  IKTSFEGNGRTGSFSRTIDKGLIATTWIWNLHADAHDFDSHTSDLEEISRK 54
          IKTSFE  GR G FSRTI KG   TTWIWNLHADAHDFDSHTSDLEEISRK
Sbjct: 19 IKTSFEEWGRPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRK 69

[Close]

BLAST of Bhi05G001239 vs. TrEMBL
Match: tr|A0A1W6C8H3|A0A1W6C8H3_9LILI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Dioscorea villosa OX=330167 GN=psaA PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.6e-15
Identity = 43/51 (84.31%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 3  IKTSFEGNGRTGSFSRTIDKGLIATTWIWNLHADAHDFDSHTSDLEEISRK 54
          IKTSFE  GR G FSRTI KG   TTWIWNLHADAHDFDSHTSDLEEISRK
Sbjct: 19 IKTSFEEWGRPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRK 69

[Close]

BLAST of Bhi05G001239 vs. TrEMBL
Match: tr|A0A2S0DUG1|A0A2S0DUG1_9LILI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Dioscorea collettii OX=357959 GN=psaA PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.6e-15
Identity = 43/51 (84.31%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 3  IKTSFEGNGRTGSFSRTIDKGLIATTWIWNLHADAHDFDSHTSDLEEISRK 54
          IKTSFE  GR G FSRTI KG   TTWIWNLHADAHDFDSHTSDLEEISRK
Sbjct: 19 IKTSFEEWGRPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRK 69

[Close]

BLAST of Bhi05G001239 vs. TrEMBL
Match: tr|A0A0M4KYM7|A0A0M4KYM7_VISAL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Viscum album OX=3972 GN=psaA PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.6e-15
Identity = 43/51 (84.31%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 3  IKTSFEGNGRTGSFSRTIDKGLIATTWIWNLHADAHDFDSHTSDLEEISRK 54
          IKTSFE  GR G FSRTI KG   TTWIWNLHADAHDFDSHTSDLEEISRK
Sbjct: 19 IKTSFEEWGRPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRK 69

[Close]

BLAST of Bhi05G001239 vs. NCBI nr
Match: ABB90041.1 (photosystem I P700 apoprotein A1 (chloroplast) [Solanum tuberosum])

HSP 1 Score: 89.0 bits (219), Expect = 5.4e-15
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 3  IKTSFEGNGRTGSFSRTIDKGLIATTWIWNLHADAHDFDSHTSDLEEISRK 54
          +KTSFEG  R G FSRTI KG   TTWIWNLHADAHDFDSHTSDLEEISRK
Sbjct: 19 VKTSFEGWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRK 69

[Close]

BLAST of Bhi05G001239 vs. NCBI nr
Match: ADD30825.1 (photosystem I P700 apoprotein A1 (chloroplast) [Phoradendron leucarpum])

HSP 1 Score: 88.6 bits (218), Expect = 7.0e-15
Identity = 43/51 (84.31%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 3  IKTSFEGNGRTGSFSRTIDKGLIATTWIWNLHADAHDFDSHTSDLEEISRK 54
          IKTSFE  GR G FSRTI KG   TTWIWNLHADAHDFDSHTSDLEEISRK
Sbjct: 19 IKTSFEEWGRPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRK 69

[Close]

BLAST of Bhi05G001239 vs. NCBI nr
Match: YP_009139101.1 (photosystem I P700 apoprotein A1 (chloroplast) [Dioscorea zingiberensis] >YP_009485050.1 photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Dioscorea collettii] >AKF33611.1 photosystem I P700 apoprotein A1 (chloroplast) [Dioscorea zingiberensis] >AKJ77573.1 photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Dioscorea nipponica] >ATN95643.1 photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Dioscorea collettii])

HSP 1 Score: 88.6 bits (218), Expect = 7.0e-15
Identity = 43/51 (84.31%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 3  IKTSFEGNGRTGSFSRTIDKGLIATTWIWNLHADAHDFDSHTSDLEEISRK 54
          IKTSFE  GR G FSRTI KG   TTWIWNLHADAHDFDSHTSDLEEISRK
Sbjct: 19 IKTSFEEWGRPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRK 69

[Close]

BLAST of Bhi05G001239 vs. NCBI nr
Match: YP_009169880.1 (photosystem I P700 apoprotein A1 (chloroplast) [Viscum album] >ALD84691.1 photosystem I P700 apoprotein A1 (chloroplast) [Viscum album])

HSP 1 Score: 88.6 bits (218), Expect = 7.0e-15
Identity = 43/51 (84.31%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 3  IKTSFEGNGRTGSFSRTIDKGLIATTWIWNLHADAHDFDSHTSDLEEISRK 54
          IKTSFE  GR G FSRTI KG   TTWIWNLHADAHDFDSHTSDLEEISRK
Sbjct: 19 IKTSFEEWGRPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRK 69

[Close]

BLAST of Bhi05G001239 vs. NCBI nr
Match: YP_009365491.1 (photosystem I P700 chlorophyll a apoprotein A1 (plastid) [Dioscorea villosa] >ARJ60998.1 photosystem I P700 chlorophyll a apoprotein A1 (plastid) [Dioscorea villosa])

HSP 1 Score: 88.6 bits (218), Expect = 7.0e-15
Identity = 43/51 (84.31%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 3  IKTSFEGNGRTGSFSRTIDKGLIATTWIWNLHADAHDFDSHTSDLEEISRK 54
          IKTSFE  GR G FSRTI KG   TTWIWNLHADAHDFDSHTSDLEEISRK
Sbjct: 19 IKTSFEEWGRPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRK 69

The following BLAST results are available for this feature:

BLAST of Bhi05G001239 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q3V534\|PSAA_ACOCL	6.7e-17	82.35	Photosystem I P700 chlorophyll a apoprotein A1 OS=Acorus calamus OX=4465 GN=psaA...	[more]
sp\|Q2QD89\|PSAA_CUCSA	8.7e-17	82.35	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psa...	[more]
sp\|Q70Y03\|PSAA_AMBTC	1.1e-16	82.35	Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda OX=13333 ...	[more]
sp\|Q7YJX2\|PSAA_CALFG	1.1e-16	82.35	Photosystem I P700 chlorophyll a apoprotein A1 OS=Calycanthus floridus var. glau...	[more]
sp\|Q1KXV9\|PSAA_HELAN	1.1e-16	82.35	Photosystem I P700 chlorophyll a apoprotein A1 OS=Helianthus annuus OX=4232 GN=p...	[more]

BLAST of Bhi05G001239 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00350.1	1.4e-17	80.39	Photosystem I, PsaA/PsaB protein	[more]

BLAST of Bhi05G001239 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1Z2RQP9\|A0A1Z2RQP9_9MAGN	4.6e-15	84.31	Photosystem I P700 chlorophyll a apoprotein A1 OS=Viscum coloratum OX=159976 GN=...	[more]
tr\|D3WCK8\|D3WCK8_PHOLC	4.6e-15	84.31	Photosystem I P700 chlorophyll a apoprotein A1 OS=Phoradendron leucarpum OX=3970...	[more]
tr\|A0A1W6C8H3\|A0A1W6C8H3_9LILI	4.6e-15	84.31	Photosystem I P700 chlorophyll a apoprotein A1 OS=Dioscorea villosa OX=330167 GN...	[more]
tr\|A0A2S0DUG1\|A0A2S0DUG1_9LILI	4.6e-15	84.31	Photosystem I P700 chlorophyll a apoprotein A1 OS=Dioscorea collettii OX=357959 ...	[more]
tr\|A0A0M4KYM7\|A0A0M4KYM7_VISAL	4.6e-15	84.31	Photosystem I P700 chlorophyll a apoprotein A1 OS=Viscum album OX=3972 GN=psaA P...	[more]

BLAST of Bhi05G001239 vs. NCBI nr


Match Name	E-value	Identity	Description
ABB90041.1	5.4e-15	82.35	photosystem I P700 apoprotein A1 (chloroplast) [Solanum tuberosum]	[more]
ADD30825.1	7.0e-15	84.31	photosystem I P700 apoprotein A1 (chloroplast) [Phoradendron leucarpum]	[more]
YP_009139101.1	7.0e-15	84.31	photosystem I P700 apoprotein A1 (chloroplast) [Dioscorea zingiberensis] >YP_009...	[more]
YP_009169880.1	7.0e-15	84.31	photosystem I P700 apoprotein A1 (chloroplast) [Viscum album] >ALD84691.1 photos...	[more]
YP_009365491.1	7.0e-15	84.31	photosystem I P700 chlorophyll a apoprotein A1 (plastid) [Dioscorea villosa] >AR...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0009522	photosystem I
GO:0009579	thylakoid

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR006243	PSI_PsaA
IPR036408	PSI_PsaA/B_sf
IPR001280	PSI_PsaA/B

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015979	photosynthesis
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001239	Bhi05M001239	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 16..53 e-value: 1.4E-10 score: 40.0
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	G3DSA:1.20.1130.10		coord: 1..53 e-value: 1.4E-15 score: 58.1
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	SSF81558	Photosystem I subunits PsaA/PsaB	coord: 6..53
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 12..53
IPR006243	Photosystem I PsaA	PANTHER	PTHR30128:SF8	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1	coord: 12..53

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G001239	Wax gourd	wgowgoB070
Bhi05G001239	Cucumber (Gy14) v1	cgywgoB371
Bhi05G001239	Cucumber (Gy14) v2	cgybwgoB640
Bhi05G001239	Cucumber (Gy14) v2	cgybwgoB641
Bhi05G001239	Cucurbita maxima (Rimu)	cmawgoB0120
Bhi05G001239	Cucurbita maxima (Rimu)	cmawgoB0652
Bhi05G001239	Cucurbita moschata (Rifu)	cmowgoB0116
Bhi05G001239	Cucurbita moschata (Rifu)	cmowgoB0653
Bhi05G001239	Cucurbita pepo (Zucchini)	cpewgoB0326
Bhi05G001239	Cucurbita pepo (Zucchini)	cpewgoB0349
Bhi05G001239	Cucurbita pepo (Zucchini)	cpewgoB0852
Bhi05G001239	Wild cucumber (PI 183967)	cpiwgoB150
Bhi05G001239	Wild cucumber (PI 183967)	cpiwgoB680
Bhi05G001239	Wild cucumber (PI 183967)	cpiwgoB681
Bhi05G001239	Cucumber (Chinese Long) v3	cucwgoB158
Bhi05G001239	Cucumber (Chinese Long) v3	cucwgoB694
Bhi05G001239	Cucumber (Chinese Long) v3	cucwgoB695
Bhi05G001239	Cucumber (Chinese Long) v2	cuwgoB151
Bhi05G001239	Cucumber (Chinese Long) v2	cuwgoB669
Bhi05G001239	Cucumber (Chinese Long) v2	cuwgoB670
Bhi05G001239	Bottle gourd (USVL1VR-Ls)	lsiwgoB064
Bhi05G001239	Bottle gourd (USVL1VR-Ls)	lsiwgoB118
Bhi05G001239	Melon (DHL92) v3.6.1	medwgoB108
Bhi05G001239	Melon (DHL92) v3.6.1	medwgoB212
Bhi05G001239	Melon (DHL92) v3.5.1	mewgoB107
Bhi05G001239	Melon (DHL92) v3.5.1	mewgoB212
Bhi05G001239	Watermelon (Charleston Gray)	wcgwgoB266
Bhi05G001239	Watermelon (97103) v2	wgowmbB241
Bhi05G001239	Watermelon (97103) v2	wgowmbB256
Bhi05G001239	Watermelon (97103) v1	wgowmB272
Bhi05G001239	Silver-seed gourd	carwgoB0251
Bhi05G001239	Silver-seed gourd	carwgoB0429
Bhi05G001239	Silver-seed gourd	carwgoB1253