Bhi05G001233 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G001233
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr5 : 49062844 .. 49062999 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGATGACCAGAACATTAGAATGCTACAACAAAGTGATGAAAGTCCAGGCAGTTCTGATGGGTTGCTTTCCATTGATGACAATGGTGGAGTTGAATATGATGATATGCTGGTAGATGACCGTACTCGATCCCGACAACTATCTACCGGCTAG

mRNA sequence

ATGGGTGATGACCAGAACATTAGAATGCTACAACAAAGTGATGAAAGTCCAGGCAGTTCTGATGGGTTGCTTTCCATTGATGACAATGGTGGAGTTGAATATGATGATATGCTGGTAGATGACCGTACTCGATCCCGACAACTATCTACCGGCTAG

Coding sequence (CDS)

ATGGGTGATGACCAGAACATTAGAATGCTACAACAAAGTGATGAAAGTCCAGGCAGTTCTGATGGGTTGCTTTCCATTGATGACAATGGTGGAGTTGAATATGATGATATGCTGGTAGATGACCGTACTCGATCCCGACAACTATCTACCGGCTAG

Protein sequence

MGDDQNIRMLQQSDESPGSSDGLLSIDDNGGVEYDDMLVDDRTRSRQLSTG

Homology

[Close]

BLAST of Bhi05G001233 vs. NCBI nr
Match: XP_022952970.1 (homeobox-DDT domain protein RLT2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 68.6 bits (166), Expect = 7.2e-09
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 3    DDQNIRMLQQSDESPGSSDGLLSIDDNGGVEYDDMLVDDRTRSRQ 48
            DDQNIRMLQ+SD SP SSD L+SID++G VEYDDMLVDDR RS Q
Sbjct: 1579 DDQNIRMLQRSDGSPNSSDRLISIDNSGRVEYDDMLVDDRARSWQ 1623

[Close]

BLAST of Bhi05G001233 vs. NCBI nr
Match: XP_022952971.1 (homeobox-DDT domain protein RLT2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 68.6 bits (166), Expect = 7.2e-09
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 3    DDQNIRMLQQSDESPGSSDGLLSIDDNGGVEYDDMLVDDRTRSRQ 48
            DDQNIRMLQ+SD SP SSD L+SID++G VEYDDMLVDDR RS Q
Sbjct: 1546 DDQNIRMLQRSDGSPNSSDRLISIDNSGRVEYDDMLVDDRARSWQ 1590

[Close]

BLAST of Bhi05G001233 vs. NCBI nr
Match: XP_023554341.1 (homeobox-DDT domain protein RLT2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-08
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 3    DDQNIRMLQQSDESPGSSDGLLSIDDNGGVEYDDMLVDDRTRSRQ 48
            DDQN RMLQ+SD SP SSD L+SID++G VEYDDMLVDDR RS Q
Sbjct: 1543 DDQNTRMLQRSDGSPSSSDRLISIDNSGRVEYDDMLVDDRARSWQ 1587

[Close]

BLAST of Bhi05G001233 vs. NCBI nr
Match: XP_023554340.1 (homeobox-DDT domain protein RLT2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-08
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 3    DDQNIRMLQQSDESPGSSDGLLSIDDNGGVEYDDMLVDDRTRSRQ 48
            DDQN RMLQ+SD SP SSD L+SID++G VEYDDMLVDDR RS Q
Sbjct: 1576 DDQNTRMLQRSDGSPSSSDRLISIDNSGRVEYDDMLVDDRARSWQ 1620

[Close]

BLAST of Bhi05G001233 vs. NCBI nr
Match: XP_022968923.1 (LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT2-like [Cucurbita maxima])

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-07
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 3    DDQNIRMLQQSDESPGSSDGLLSIDDNGGVEYDDMLVDDRTRSRQ 48
            DDQNIRMLQ+SD SP  S  L+SID++G VEYDDMLVDDR RS Q
Sbjct: 1608 DDQNIRMLQRSDGSPSISHRLISIDNSGRVEYDDMLVDDRARSWQ 1652

The following BLAST results are available for this feature:

BLAST of Bhi05G001233 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi05G001233 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi05G001233 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of Bhi05G001233 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952970.1	7.2e-09	77.78	homeobox-DDT domain protein RLT2-like isoform X1 [Cucurbita moschata]	[more]
XP_022952971.1	7.2e-09	77.78	homeobox-DDT domain protein RLT2-like isoform X2 [Cucurbita moschata]	[more]
XP_023554341.1	2.7e-08	75.56	homeobox-DDT domain protein RLT2-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023554340.1	2.7e-08	75.56	homeobox-DDT domain protein RLT2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022968923.1	2.3e-07	73.33	LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT2-like [Cucurbita maxima]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001233	Bhi05M001233	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi05G001233	CmaCh19G008940	Cucurbita maxima (Rimu)	cmawgoB0652
Bhi05G001233	CmoCh19G009090	Cucurbita moschata (Rifu)	cmowgoB0653
Bhi05G001233	Cp4.1LG15g07210	Cucurbita pepo (Zucchini)	cpewgoB0326

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G001233	Wax gourd	wgowgoB070
Bhi05G001233	Cucumber (Gy14) v1	cgywgoB371
Bhi05G001233	Cucumber (Gy14) v2	cgybwgoB640
Bhi05G001233	Cucumber (Gy14) v2	cgybwgoB641
Bhi05G001233	Cucurbita maxima (Rimu)	cmawgoB0120
Bhi05G001233	Cucurbita moschata (Rifu)	cmowgoB0116
Bhi05G001233	Cucurbita pepo (Zucchini)	cpewgoB0349
Bhi05G001233	Cucurbita pepo (Zucchini)	cpewgoB0852
Bhi05G001233	Wild cucumber (PI 183967)	cpiwgoB150
Bhi05G001233	Wild cucumber (PI 183967)	cpiwgoB680
Bhi05G001233	Wild cucumber (PI 183967)	cpiwgoB681
Bhi05G001233	Cucumber (Chinese Long) v3	cucwgoB158
Bhi05G001233	Cucumber (Chinese Long) v3	cucwgoB694
Bhi05G001233	Cucumber (Chinese Long) v3	cucwgoB695
Bhi05G001233	Cucumber (Chinese Long) v2	cuwgoB151
Bhi05G001233	Cucumber (Chinese Long) v2	cuwgoB669
Bhi05G001233	Cucumber (Chinese Long) v2	cuwgoB670
Bhi05G001233	Bottle gourd (USVL1VR-Ls)	lsiwgoB064
Bhi05G001233	Bottle gourd (USVL1VR-Ls)	lsiwgoB118
Bhi05G001233	Melon (DHL92) v3.6.1	medwgoB108
Bhi05G001233	Melon (DHL92) v3.6.1	medwgoB212
Bhi05G001233	Melon (DHL92) v3.5.1	mewgoB107
Bhi05G001233	Melon (DHL92) v3.5.1	mewgoB212
Bhi05G001233	Watermelon (Charleston Gray)	wcgwgoB266
Bhi05G001233	Watermelon (97103) v2	wgowmbB241
Bhi05G001233	Watermelon (97103) v1	wgowmB272
Bhi05G001233	Silver-seed gourd	carwgoB0251
Bhi05G001233	Silver-seed gourd	carwgoB1253