Bhi05G001027 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G001027
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic
Location	chr5 : 41609185 .. 41609523 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGGACGAAACCAAGAAATAACCCCTCACGTGCGAAATTATAGAAGATCTTCTTTAAGATCAAACAATTCCATTGAAACGGAGGAAATAAGGGAAAGCGAGGAAGAAACAGATGTAGAAATAGAAATCACTTCCGAAACGAAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAATGAGGAAACAAAAGCAAAAATTCAGGACAAATGGGAACCGTTAACTTTAACTATTGACTGTGAATTCCTAAATGATTTTTGGATTGAAATTGAAAATTCGGTTTCTCTGTCGAAAGATGAGTAA

mRNA sequence

ATGACTGGACGAAACCAAGAAATAACCCCTCACGTGCGAAATTATAGAAGATCTTCTTTAAGATCAAACAATTCCATTGAAACGGAGGAAATAAGGGAAAGCGAGGAAGAAACAGATGTAGAAATAGAAATCACTTCCGAAACGAAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAATGAGGAAACAAAAGCAAAAATTCAGGACAAATGGGAACCGTTAACTTTAACTATTGACTGTGAATTCCTAAATGATTTTTGGATTGAAATTGAAAATTCGGTTTCTCTGTCGAAAGATGAGTAA

Coding sequence (CDS)

ATGACTGGACGAAACCAAGAAATAACCCCTCACGTGCGAAATTATAGAAGATCTTCTTTAAGATCAAACAATTCCATTGAAACGGAGGAAATAAGGGAAAGCGAGGAAGAAACAGATGTAGAAATAGAAATCACTTCCGAAACGAAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAATGAGGAAACAAAAGCAAAAATTCAGGACAAATGGGAACCGTTAACTTTAACTATTGACTGTGAATTCCTAAATGATTTTTGGATTGAAATTGAAAATTCGGTTTCTCTGTCGAAAGATGAGTAA

Protein sequence

MTGRNQEITPHVRNYRRSSLRSNNSIETEEIRESEEETDVEIEITSETKGTKQEQEGSTEEDTSPSLFSEENEETKAKIQDKWEPLTLTIDCEFLNDFWIEIENSVSLSKDE

Homology

[Close]

BLAST of Bhi05G001027 vs. Swiss-Prot
Match: sp|Q67ID9|NU2C_SISMO (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Sisyrinchium montanum OX=207934 GN=ndhB PE=3 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 7.7e-07
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIE 28
           MTGRNQEITPHVRNYRRS+LRSNNSIE
Sbjct: 455 MTGRNQEITPHVRNYRRSTLRSNNSIE 481

[Close]

BLAST of Bhi05G001027 vs. Swiss-Prot
Match: sp|P0CC20|NU2C1_ACOAM (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Acorus americanus OX=263995 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIETEEI 32
           MTGRNQEITPHVRNYRRS LRSNNSIE   I
Sbjct: 455 MTGRNQEITPHVRNYRRSPLRSNNSIELSMI 485

[Close]

BLAST of Bhi05G001027 vs. Swiss-Prot
Match: sp|P0CC21|NU2C1_ACOCL (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Acorus calamus OX=4465 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIETEEI 32
           MTGRNQEITPHVRNYRRS LRSNNSIE   I
Sbjct: 455 MTGRNQEITPHVRNYRRSPLRSNNSIELSMI 485

[Close]

BLAST of Bhi05G001027 vs. Swiss-Prot
Match: sp|P0CC34|NU2C1_ATRBE (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Atropa belladonna OX=33113 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIETEEI 32
           MTGRNQEITPHVRNYRRS LRSNNSIE   I
Sbjct: 455 MTGRNQEITPHVRNYRRSPLRSNNSIELSMI 485

[Close]

BLAST of Bhi05G001027 vs. Swiss-Prot
Match: sp|P0CC36|NU2C1_BUXMI (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Buxus microphylla OX=153571 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIETEEI 32
           MTGRNQEITPHVRNYRRS LRSNNSIE   I
Sbjct: 455 MTGRNQEITPHVRNYRRSPLRSNNSIELSMI 485

[Close]

BLAST of Bhi05G001027 vs. TAIR10
Match: ATCG00890.1 (NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIETEEI 32
           MTGRNQEITPH+RNYR S LRSNNSIE   I
Sbjct: 332 MTGRNQEITPHMRNYRISPLRSNNSIELSMI 362

[Close]

BLAST of Bhi05G001027 vs. TAIR10
Match: ATCG01250.1 (NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIETEEI 32
           MTGRNQEITPH+RNYR S LRSNNSIE   I
Sbjct: 332 MTGRNQEITPHMRNYRISPLRSNNSIELSMI 362

[Close]

BLAST of Bhi05G001027 vs. TrEMBL
Match: tr|R4PIB2|R4PIB2_UTRGI (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Utricularia gibba OX=13748 GN=ndhB PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.0e-05
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIETEEI 32
           MTGRNQEITPHVRNYRRSSLRSNNSIE   I
Sbjct: 455 MTGRNQEITPHVRNYRRSSLRSNNSIELSMI 485

[Close]

BLAST of Bhi05G001027 vs. TrEMBL
Match: tr|A0A191VTD3|A0A191VTD3_9ROSI (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Kostermanthus robustus OX=692125 GN=ndhB PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.0e-05
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIETEEI 32
           MTGRNQEITPHVRNYRRSSLRSNNSIE   I
Sbjct: 455 MTGRNQEITPHVRNYRRSSLRSNNSIELSMI 485

[Close]

BLAST of Bhi05G001027 vs. TrEMBL
Match: tr|A0A2G3BUI7|A0A2G3BUI7_CAPCH (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Capsicum chinense OX=80379 GN=BC332_21992 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.0e-05
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIETEEI 32
           MTGRNQEITPHVRNYRRSSLRSNNSIE   I
Sbjct: 149 MTGRNQEITPHVRNYRRSSLRSNNSIELSMI 179

[Close]

BLAST of Bhi05G001027 vs. TrEMBL
Match: tr|A0A0K1ZVI9|A0A0K1ZVI9_9ASTR (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Goodenia hassallii OX=1690104 GN=ndhB PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.0e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIE 28
           MTGRNQEITPHVRNYRRSSLRSNNSIE
Sbjct: 455 MTGRNQEITPHVRNYRRSSLRSNNSIE 481

[Close]

BLAST of Bhi05G001027 vs. TrEMBL
Match: tr|J7F4F2|J7F4F2_ELOCA (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Elodea canadensis OX=100364 GN=ndhB PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIE 28
           MTGRNQEITPHVRNYRRS+LRSNNSIE
Sbjct: 455 MTGRNQEITPHVRNYRRSTLRSNNSIE 481

[Close]

BLAST of Bhi05G001027 vs. NCBI nr
Match: YP_008082626.1 (NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Utricularia gibba] >YP_008082643.1 NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Utricularia gibba] >AGL61120.1 NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Utricularia gibba] >AGL61138.1 NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Utricularia gibba])

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIETEEI 32
           MTGRNQEITPHVRNYRRSSLRSNNSIE   I
Sbjct: 455 MTGRNQEITPHVRNYRRSSLRSNNSIELSMI 485

[Close]

BLAST of Bhi05G001027 vs. NCBI nr
Match: AKZ30309.1 (NADH dehydrogenase subunit 2 (chloroplast) [Goodenia hassallii])

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIE 28
           MTGRNQEITPHVRNYRRSSLRSNNSIE
Sbjct: 455 MTGRNQEITPHVRNYRRSSLRSNNSIE 481

[Close]

BLAST of Bhi05G001027 vs. NCBI nr
Match: YP_009264735.1 (NADH dehydrogenase subunit 2 (chloroplast) [Kostermanthus robustus] >YP_009264750.1 NADH dehydrogenase subunit 2 (chloroplast) [Kostermanthus robustus] >ANJ18985.1 NADH dehydrogenase subunit 2 (chloroplast) [Kostermanthus robustus] >ANJ18986.1 NADH dehydrogenase subunit 2 (chloroplast) [Kostermanthus robustus])

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIETEEI 32
           MTGRNQEITPHVRNYRRSSLRSNNSIE   I
Sbjct: 455 MTGRNQEITPHVRNYRRSSLRSNNSIELSMI 485

[Close]

BLAST of Bhi05G001027 vs. NCBI nr
Match: PHU10132.1 (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic [Capsicum chinense])

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIETEEI 32
           MTGRNQEITPHVRNYRRSSLRSNNSIE   I
Sbjct: 149 MTGRNQEITPHVRNYRRSSLRSNNSIELSMI 179

[Close]

BLAST of Bhi05G001027 vs. NCBI nr
Match: AAN31965.1 (NADH dehydrogenase subunit B, partial (chloroplast) [Scheuchzeria palustris])

HSP 1 Score: 54.7 bits (130), Expect = 2.4e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIE 28
           MTGRNQEITPHVRNYRRS+LRSNNSIE
Sbjct: 437 MTGRNQEITPHVRNYRRSTLRSNNSIE 463

The following BLAST results are available for this feature:

BLAST of Bhi05G001027 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q67ID9\|NU2C_SISMO	7.7e-07	96.30	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Sisyrinchium montanum...	[more]
sp\|P0CC20\|NU2C1_ACOAM	1.3e-06	87.10	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Acorus americanus O...	[more]
sp\|P0CC21\|NU2C1_ACOCL	1.3e-06	87.10	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Acorus calamus OX=4...	[more]
sp\|P0CC34\|NU2C1_ATRBE	1.3e-06	87.10	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Atropa belladonna O...	[more]
sp\|P0CC36\|NU2C1_BUXMI	1.3e-06	87.10	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Buxus microphylla O...	[more]

BLAST of Bhi05G001027 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00890.1	1.4e-06	80.65	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]
ATCG01250.1	1.4e-06	80.65	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]

BLAST of Bhi05G001027 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|R4PIB2\|R4PIB2_UTRGI	7.0e-05	90.32	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Utricularia gibba OX=...	[more]
tr\|A0A191VTD3\|A0A191VTD3_9ROSI	7.0e-05	90.32	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Kostermanthus robustu...	[more]
tr\|A0A2G3BUI7\|A0A2G3BUI7_CAPCH	7.0e-05	90.32	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Capsicum chinense O...	[more]
tr\|A0A0K1ZVI9\|A0A0K1ZVI9_9ASTR	7.0e-05	100.00	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Goodenia hassallii OX...	[more]
tr\|J7F4F2\|J7F4F2_ELOCA	1.6e-04	96.30	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Elodea canadensis OX=...	[more]

BLAST of Bhi05G001027 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_008082626.1	1.1e-04	90.32	NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Utricularia gibba] >Y...	[more]
AKZ30309.1	1.1e-04	100.00	NADH dehydrogenase subunit 2 (chloroplast) [Goodenia hassallii]	[more]
YP_009264735.1	1.1e-04	90.32	NADH dehydrogenase subunit 2 (chloroplast) [Kostermanthus robustus] >YP_00926475...	[more]
PHU10132.1	1.1e-04	90.32	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic [Capsicum chinense]	[more]
AAN31965.1	2.4e-04	96.30	NADH dehydrogenase subunit B, partial (chloroplast) [Scheuchzeria palustris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR008896	TIC214

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001027	Bhi05M001027	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 17..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..78
None	No IPR available	PANTHER	PTHR33163:SF13	PROTEIN TIC 214	coord: 25..81
None	No IPR available	PANTHER	PTHR33163	FAMILY NOT NAMED	coord: 25..81
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 24..82 e-value: 1.3E-14 score: 53.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G001027	Cucumber (Gy14) v1	cgywgoB172
Bhi05G001027	Cucumber (Gy14) v1	cgywgoB446
Bhi05G001027	Cucumber (Gy14) v2	cgybwgoB144
Bhi05G001027	Cucumber (Gy14) v2	cgybwgoB634
Bhi05G001027	Cucurbita maxima (Rimu)	cmawgoB0118
Bhi05G001027	Cucurbita maxima (Rimu)	cmawgoB0641
Bhi05G001027	Cucurbita maxima (Rimu)	cmawgoB0739
Bhi05G001027	Cucurbita maxima (Rimu)	cmawgoB1050
Bhi05G001027	Cucurbita moschata (Rifu)	cmowgoB0119
Bhi05G001027	Cucurbita moschata (Rifu)	cmowgoB0641
Bhi05G001027	Cucurbita moschata (Rifu)	cmowgoB0731
Bhi05G001027	Cucurbita moschata (Rifu)	cmowgoB1043
Bhi05G001027	Cucurbita pepo (Zucchini)	cpewgoB0316
Bhi05G001027	Cucurbita pepo (Zucchini)	cpewgoB0855
Bhi05G001027	Cucurbita pepo (Zucchini)	cpewgoB0932
Bhi05G001027	Wild cucumber (PI 183967)	cpiwgoB146
Bhi05G001027	Wild cucumber (PI 183967)	cpiwgoB674
Bhi05G001027	Cucumber (Chinese Long) v3	cucwgoB154
Bhi05G001027	Cucumber (Chinese Long) v3	cucwgoB588
Bhi05G001027	Cucumber (Chinese Long) v3	cucwgoB688
Bhi05G001027	Cucumber (Chinese Long) v2	cuwgoB147
Bhi05G001027	Cucumber (Chinese Long) v2	cuwgoB663
Bhi05G001027	Bottle gourd (USVL1VR-Ls)	lsiwgoB062
Bhi05G001027	Bottle gourd (USVL1VR-Ls)	lsiwgoB115
Bhi05G001027	Melon (DHL92) v3.6.1	medwgoB222
Bhi05G001027	Melon (DHL92) v3.6.1	medwgoB629
Bhi05G001027	Melon (DHL92) v3.5.1	mewgoB222
Bhi05G001027	Watermelon (Charleston Gray)	wcgwgoB041
Bhi05G001027	Watermelon (Charleston Gray)	wcgwgoB275
Bhi05G001027	Watermelon (97103) v2	wgowmbB250
Bhi05G001027	Watermelon (97103) v2	wgowmbB270
Bhi05G001027	Watermelon (97103) v1	wgowmB250
Bhi05G001027	Watermelon (97103) v1	wgowmB280
Bhi05G001027	Silver-seed gourd	carwgoB0260
Bhi05G001027	Silver-seed gourd	carwgoB1036