Bhi05G000906 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G000906
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	DNA polymerase kappa
Location	chr5 : 37478785 .. 37480489 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGAAGGAAACTGCCGGCGATGCCGATCGTCCATGGCAGTCTTACCACACTGTCTACACCAATGCAAAAGCCGGTATTTCTTCTCTCTTTTACTTCTCACGAACAGTCGCTAATCTAGGGTTCTTTTCTTATTGTCTTGTTTACAGTTTCTATTTTGAATTTGAGGAAACATTATGATGGAATTGGTAGGTCATAGGTGTTGTTTTTAATATCTTGGCCATCATTTAGAAGACTGGCAGCGGACTAATATTGCTTGGTGATCAGGAAAATGAATCTACCATTGTTTAATTCTTTGACCAGATCATTAGAAGGTATCCCATCAGCAATCTGAAGATTACTCGACCAGATCAGTAATCCAAGGTCACTGTTGAATTTTTTTCTTTTTACGAGTAACCTTGTGAACTTCGTATAAATTGCAGCTGACCTTGCGGAGATGCTGTCAATGGACATGGAAAAAGAAGGTCTAACTGGGCGGACACTGACTAAACTGAAAACTGCATCCTTTGAGGTACATTATTTGCCCTGAATCCTGTTAAATCTGTTTAGATTGGATAGAGAAGAAATTCCATATGTGTAATATGTTGAGATTTCAATAACCACTCATTCAGATGTGTGATTTCTATTAACTGCTACTTTCTTCCCGTAGAAGAAATTAATTTTAAGCTTATAATCACTACTTTCATCTATATGTTTCTTTGTTTTGTTTTCTCGCCATCGAAAGGTTATATCTAAATTAAAATTTGAAAACTTGAAAAACTAATCTATCAACTTTGTTTTTTTGTTTTTGAATTTTTCATAAGATTTCAAATGTGTTTTTAAAGAAAGTGAAGTAGACAAAATTGTTAGAAAAGAAGCATACATTTTAAAACACAACTAAAGAAGTTGTTATCAAATGGAGCTTTAGAGTTCATTTTTCACTAGCGTTGATATCACGTGCTTGGTTTTCTATGTTCTAATATGCACAAAATGTGATCCACTGTATGTCTCACATATGGTGAAGTAAACTTTGAAATCCTTTGATCTTGCAACTTACAACTTACAACATTTAGTTTGGAAAGAGATTTCTAACATCTCCAGGGCTGCGGATATCTCATTTCAATGAAGATGGAGCCATTGCTGGGTCTGATCCAACCCAAAGATCTATTACTAGATTTATGGGGATCTTACTAGAAAAAGTATGGATGGTTGTTGCTCCTTGAATCCCGATTCTGACAATCATGGTTTCATGGATGACACTGAAATTGATGTATGCATCAATAGTACTGATTCTGAAACACACCATCAAGATAGTACTGAGGAAAGAATCAACAACAATTTCTCGAATACGGATGAGAGCGACTGTATGTCCAACAATGATACTGAGAAGTCGGAAAAACTTGAGAATCTTTTGAGCAACACAGCACTGATCAGGTATATATCCAGACTAAAGAATGGATTATGGAATATCATCTTTCTTTATTAATTTGGATTTAAGCTTAAAGGTACTAAACTTTATTTGATCAAGTGTATTTATAGCTTTATTTCAAACAAATGGCTTCTAATGCATTTAAAATATATGTAGGCAAACATTTTTAATGCCATGGGAAGCACCCCAGATTCCTCGGACGCCTTAATCCCTCGAGCCTTGAGCACAGCATGTGCTTCATCTAGAAACCTTGAGGGCAATCCCAATAAATGTAGATACCGAAAGTCGGGTTGA

mRNA sequence

ATGGAAAAGAAGGAAACTGCCGGCGATGCCGATCGTCCATGGCAGTCTTACCACACTGTCTACACCAATGCAAAAGCCGCTGACCTTGCGGAGATGCTGTCAATGGACATGGAAAAAGAAGGTCTAACTGGGCGGACACTGACTAAACTGAAAACTGCATCCTTTGAGGCAAACATTTTTAATGCCATGGGAAGCACCCCAGATTCCTCGGACGCCTTAATCCCTCGAGCCTTGAGCACAGCATGTGCTTCATCTAGAAACCTTGAGGGCAATCCCAATAAATGTAGATACCGAAAGTCGGGTTGA

Coding sequence (CDS)

ATGGAAAAGAAGGAAACTGCCGGCGATGCCGATCGTCCATGGCAGTCTTACCACACTGTCTACACCAATGCAAAAGCCGCTGACCTTGCGGAGATGCTGTCAATGGACATGGAAAAAGAAGGTCTAACTGGGCGGACACTGACTAAACTGAAAACTGCATCCTTTGAGGCAAACATTTTTAATGCCATGGGAAGCACCCCAGATTCCTCGGACGCCTTAATCCCTCGAGCCTTGAGCACAGCATGTGCTTCATCTAGAAACCTTGAGGGCAATCCCAATAAATGTAGATACCGAAAGTCGGGTTGA

Protein sequence

MEKKETAGDADRPWQSYHTVYTNAKAADLAEMLSMDMEKEGLTGRTLTKLKTASFEANIFNAMGSTPDSSDALIPRALSTACASSRNLEGNPNKCRYRKSG

Homology

[Close]

BLAST of Bhi05G000906 vs. Swiss-Prot
Match: sp|Q6JDV7|POLK_ARATH (DNA polymerase kappa OS=Arabidopsis thaliana OX=3702 GN=POLK PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-04
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 24  AKAADLAEMLSMDMEKEGLTGRTLT-KLKTASFE 57
           +K  +LAEMLS DM+KEGLT RTLT KLKTASFE
Sbjct: 361 SKLDELAEMLSHDMKKEGLTARTLTLKLKTASFE 394

[Close]

BLAST of Bhi05G000906 vs. TAIR10
Match: AT1G49980.1 (DNA/RNA polymerases superfamily protein)

HSP 1 Score: 46.6 bits (109), Expect = 1.1e-05
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 24  AKAADLAEMLSMDMEKEGLTGRTLT-KLKTASFE 57
           +K  +LAEMLS DM+KEGLT RTLT KLKTASFE
Sbjct: 361 SKLDELAEMLSHDMKKEGLTARTLTLKLKTASFE 394

[Close]

BLAST of Bhi05G000906 vs. TrEMBL
Match: tr|A0A1S3BZJ1|A0A1S3BZJ1_CUCME (DNA polymerase kappa OS=Cucumis melo OX=3656 GN=LOC103495309 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-05
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MEKKETAGDADRPWQSYHTVYTNAKA 27
          ME KETAGDADRPWQSYHTVYTNAKA
Sbjct: 26 MENKETAGDADRPWQSYHTVYTNAKA 51

HSP 2 Score: 55.8 bits (133), Expect = 6.3e-05
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 56  EANIFNAMGSTPDSSDALIPRALSTACASSRNLEGNPN 94
           +ANI  A+GST  SSDALIP   STACASSRNLEGNPN
Sbjct: 569 QANISTAIGSTSVSSDALIPPVSSTACASSRNLEGNPN 606

[Close]

BLAST of Bhi05G000906 vs. TrEMBL
Match: tr|A0A0A0K2X3|A0A0A0K2X3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071370 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-05
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 56  EANIFNAMGSTPDSSDALIPRALSTACASSRNLEGNPN 94
           +ANI  A+GST DSSDALI R  STAC+SSRNLEGNPN
Sbjct: 544 QANISTAIGSTSDSSDALIRRVSSTACSSSRNLEGNPN 581

HSP 2 Score: 57.4 bits (137), Expect = 2.2e-05
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MEKKETAGDADRPWQSYHTVYTNAKA 27
          ME KETAGDADRPWQSYHTVYTNAKA
Sbjct: 1  MENKETAGDADRPWQSYHTVYTNAKA 26

[Close]

BLAST of Bhi05G000906 vs. TrEMBL
Match: tr|A0A2P5QAC1|A0A2P5QAC1_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD31601 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.0e-04
Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 25  KAADLAEMLSMDMEKEGLTGRTLT-KLKTASFEANIFNAMGSTPDSSDALIPRALSTACA 84
           K AD+AEMLS DM+KEGL+GRTLT KLKTASFE N  +    T  S    + R      +
Sbjct: 372 KLADIAEMLSADMQKEGLSGRTLTLKLKTASFEVNTADVKERTTKSPKRDLSRVSEDDSS 431

Query: 85  SSRNLE-GNPNK 95
             R  E  NP++
Sbjct: 432 IQREPEDSNPDR 443

[Close]

BLAST of Bhi05G000906 vs. NCBI nr
Match: XP_004137085.1 (PREDICTED: DNA polymerase kappa isoform X1 [Cucumis sativus] >KGN43848.1 hypothetical protein Csa_7G071370 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 3.3e-05
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 56  EANIFNAMGSTPDSSDALIPRALSTACASSRNLEGNPN 94
           +ANI  A+GST DSSDALI R  STAC+SSRNLEGNPN
Sbjct: 544 QANISTAIGSTSDSSDALIRRVSSTACSSSRNLEGNPN 581

HSP 2 Score: 57.4 bits (137), Expect = 3.3e-05
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MEKKETAGDADRPWQSYHTVYTNAKA 27
          ME KETAGDADRPWQSYHTVYTNAKA
Sbjct: 1  MENKETAGDADRPWQSYHTVYTNAKA 26

[Close]

BLAST of Bhi05G000906 vs. NCBI nr
Match: XP_008455038.1 (PREDICTED: DNA polymerase kappa [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 3.3e-05
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MEKKETAGDADRPWQSYHTVYTNAKA 27
          ME KETAGDADRPWQSYHTVYTNAKA
Sbjct: 26 MENKETAGDADRPWQSYHTVYTNAKA 51

HSP 2 Score: 55.8 bits (133), Expect = 9.6e-05
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 56  EANIFNAMGSTPDSSDALIPRALSTACASSRNLEGNPN 94
           +ANI  A+GST  SSDALIP   STACASSRNLEGNPN
Sbjct: 569 QANISTAIGSTSVSSDALIPPVSSTACASSRNLEGNPN 606

[Close]

BLAST of Bhi05G000906 vs. NCBI nr
Match: XP_011658873.1 (PREDICTED: DNA polymerase kappa isoform X2 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 3.3e-05
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 56  EANIFNAMGSTPDSSDALIPRALSTACASSRNLEGNPN 94
           +ANI  A+GST DSSDALI R  STAC+SSRNLEGNPN
Sbjct: 544 QANISTAIGSTSDSSDALIRRVSSTACSSSRNLEGNPN 581

HSP 2 Score: 57.4 bits (137), Expect = 3.3e-05
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MEKKETAGDADRPWQSYHTVYTNAKA 27
          ME KETAGDADRPWQSYHTVYTNAKA
Sbjct: 1  MENKETAGDADRPWQSYHTVYTNAKA 26

[Close]

BLAST of Bhi05G000906 vs. NCBI nr
Match: XP_022953078.1 (DNA polymerase kappa isoform X1 [Cucurbita moschata])

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 25  KAADLAEMLSMDMEKEGLTGRTLT-KLKTASFE 57
           K ADLAEMLSMDMEKEGL+GRTLT KLKTASFE
Sbjct: 358 KLADLAEMLSMDMEKEGLSGRTLTLKLKTASFE 390

[Close]

BLAST of Bhi05G000906 vs. NCBI nr
Match: XP_022953079.1 (DNA polymerase kappa isoform X2 [Cucurbita moschata])

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 25  KAADLAEMLSMDMEKEGLTGRTLT-KLKTASFE 57
           K ADLAEMLSMDMEKEGL+GRTLT KLKTASFE
Sbjct: 358 KLADLAEMLSMDMEKEGLSGRTLTLKLKTASFE 390

The following BLAST results are available for this feature:

BLAST of Bhi05G000906 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6JDV7\|POLK_ARATH	1.9e-04	76.47	DNA polymerase kappa OS=Arabidopsis thaliana OX=3702 GN=POLK PE=1 SV=1	[more]

BLAST of Bhi05G000906 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49980.1	1.1e-05	76.47	DNA/RNA polymerases superfamily protein	[more]

BLAST of Bhi05G000906 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BZJ1\|A0A1S3BZJ1_CUCME	2.2e-05	96.15	DNA polymerase kappa OS=Cucumis melo OX=3656 GN=LOC103495309 PE=3 SV=1	[more]
tr\|A0A0A0K2X3\|A0A0A0K2X3_CUCSA	2.2e-05	76.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071370 PE=3 SV=1	[more]
tr\|A0A2P5QAC1\|A0A2P5QAC1_GOSBA	7.0e-04	48.61	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD31601 PE=4 SV...	[more]

BLAST of Bhi05G000906 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137085.1	3.3e-05	76.32	PREDICTED: DNA polymerase kappa isoform X1 [Cucumis sativus] >KGN43848.1 hypothe...	[more]
XP_008455038.1	3.3e-05	96.15	PREDICTED: DNA polymerase kappa [Cucumis melo]	[more]
XP_011658873.1	3.3e-05	76.32	PREDICTED: DNA polymerase kappa isoform X2 [Cucumis sativus]	[more]
XP_022953078.1	1.6e-04	90.91	DNA polymerase kappa isoform X1 [Cucurbita moschata]	[more]
XP_022953079.1	1.6e-04	90.91	DNA polymerase kappa isoform X2 [Cucurbita moschata]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M000906	Bhi05M000906	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G000906	Cucumber (Gy14) v1	cgywgoB445
Bhi05G000906	Cucumber (Gy14) v1	cgywgoB449
Bhi05G000906	Cucumber (Gy14) v2	cgybwgoB632
Bhi05G000906	Cucumber (Gy14) v2	cgybwgoB644
Bhi05G000906	Cucurbita maxima (Rimu)	cmawgoB0116
Bhi05G000906	Cucurbita maxima (Rimu)	cmawgoB0125
Bhi05G000906	Cucurbita maxima (Rimu)	cmawgoB0642
Bhi05G000906	Cucurbita maxima (Rimu)	cmawgoB0658
Bhi05G000906	Cucurbita moschata (Rifu)	cmowgoB0112
Bhi05G000906	Cucurbita moschata (Rifu)	cmowgoB0642
Bhi05G000906	Cucurbita moschata (Rifu)	cmowgoB0659
Bhi05G000906	Cucurbita pepo (Zucchini)	cpewgoB0317
Bhi05G000906	Cucurbita pepo (Zucchini)	cpewgoB0331
Bhi05G000906	Cucurbita pepo (Zucchini)	cpewgoB0847
Bhi05G000906	Wild cucumber (PI 183967)	cpiwgoB684
Bhi05G000906	Wild cucumber (PI 183967)	cpiwgoB672
Bhi05G000906	Cucumber (Chinese Long) v3	cucwgoB686
Bhi05G000906	Cucumber (Chinese Long) v3	cucwgoB698
Bhi05G000906	Cucumber (Chinese Long) v2	cuwgoB661
Bhi05G000906	Cucumber (Chinese Long) v2	cuwgoB673
Bhi05G000906	Bottle gourd (USVL1VR-Ls)	lsiwgoB317
Bhi05G000906	Bottle gourd (USVL1VR-Ls)	lsiwgoB320
Bhi05G000906	Melon (DHL92) v3.6.1	medwgoB217
Bhi05G000906	Melon (DHL92) v3.5.1	mewgoB217
Bhi05G000906	Watermelon (Charleston Gray)	wcgwgoB268
Bhi05G000906	Watermelon (97103) v2	wgowmbB243
Bhi05G000906	Watermelon (97103) v1	wgowmB275
Bhi05G000906	Silver-seed gourd	carwgoB0548
Bhi05G000906	Silver-seed gourd	carwgoB0550
Bhi05G000906	Silver-seed gourd	carwgoB0866