Bhi05G000830 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G000830
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Ribulose bisphosphate carboxylase large chain
Location	chr5 : 34923248 .. 34923454 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGCCCTACTGGCACATCCAATCAAACTTGCTTTTGGAGCATTCCGAGTAACTCCTCAACCCGGAGTTCCACCCGAGGAAGCAGGGGCCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGATCGAGCGGCATCCTGGTAG

mRNA sequence

GAAGCCCTACTGGCACATCCAATCAAACTTGCTTTTGGAGCATTCCGAGTAACTCCTCAACCCGGAGTTCCACCCGAGGAAGCAGGGGCCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGATCGAGCGGCATCCTGGTAG

Coding sequence (CDS)

GAAGCCCTACTGGCACATCCAATCAAACTTGCTTTTGGAGCATTCCGAGTAACTCCTCAACCCGGAGTTCCACCCGAGGAAGCAGGGGCCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGATCGAGCGGCATCCTGGTAG

Protein sequence

EALLAHPIKLAFGAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDRAASW

Homology

[Close]

BLAST of Bhi05G000830 vs. Swiss-Prot
Match: sp|P27064|RBL_CUCSA (Ribulose bisphosphate carboxylase large chain OS=Cucumis sativus OX=3659 GN=rbcL PE=1 SV=5)

HSP 1 Score: 107.1 bits (266), Expect = 8.0e-23
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 14 AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDRAA 67
          AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+  A
Sbjct: 39 AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVA 91

[Close]

BLAST of Bhi05G000830 vs. Swiss-Prot
Match: sp|Q0G9V4|RBL_DAUCA (Ribulose bisphosphate carboxylase large chain OS=Daucus carota OX=4039 GN=rbcL PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.0e-23
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 14 AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDRAA 67
          AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+  A
Sbjct: 39 AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVA 91

[Close]

BLAST of Bhi05G000830 vs. Swiss-Prot
Match: sp|P28421|RBL_HEDHE (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Hedera helix OX=4052 GN=rbcL PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.0e-23
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 14 AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDRAA 67
          AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+  A
Sbjct: 30 AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVA 82

[Close]

BLAST of Bhi05G000830 vs. Swiss-Prot
Match: sp|P36486|RBL_SAUCE (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Saururus cernuus OX=13260 GN=rbcL PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.0e-23
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 14 AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDRAA 67
          AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+  A
Sbjct: 30 AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVA 82

[Close]

BLAST of Bhi05G000830 vs. Swiss-Prot
Match: sp|O62943|RBL_SESSE (Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban OX=76396 GN=rbcL PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.0e-23
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 14 AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDRAA 67
          AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+  A
Sbjct: 39 AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVA 91

[Close]

BLAST of Bhi05G000830 vs. TAIR10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases)

HSP 1 Score: 102.8 bits (255), Expect = 8.4e-23
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 14 AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGID 64
          AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY I+
Sbjct: 39 AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIE 88

[Close]

BLAST of Bhi05G000830 vs. TrEMBL
Match: tr|H9APC3|H9APC3_9CARY (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Persicaria mitis OX=1155347 GN=rbcL PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-20
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 5  AHPIKLAFGAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDR 64
          AH I     AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ 
Sbjct: 24 AHDI---LAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEP 82

Query: 65 AA 67
           A
Sbjct: 84 VA 82

[Close]

BLAST of Bhi05G000830 vs. TrEMBL
Match: tr|B5LBT5|B5LBT5_9CARY (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Persicaria maculosa OX=457184 GN=rbcL PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-20
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 5  AHPIKLAFGAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDR 64
          AH I     AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ 
Sbjct: 24 AHDI---LAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEP 82

Query: 65 AA 67
           A
Sbjct: 84 VA 82

[Close]

BLAST of Bhi05G000830 vs. TrEMBL
Match: tr|A0A0D3M2Y2|A0A0D3M2Y2_9CARY (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Persicaria maculosa OX=457184 GN=rbcL PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-20
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 5  AHPIKLAFGAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDR 64
          AH I     AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ 
Sbjct: 24 AHDI---LAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEP 82

Query: 65 AA 67
           A
Sbjct: 84 VA 82

[Close]

BLAST of Bhi05G000830 vs. TrEMBL
Match: tr|H9APC0|H9APC0_9CARY (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Persicaria maculosa OX=457184 GN=rbcL PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-20
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 5  AHPIKLAFGAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDR 64
          AH I     AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ 
Sbjct: 24 AHDI---LAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEP 82

Query: 65 AA 67
           A
Sbjct: 84 VA 82

[Close]

BLAST of Bhi05G000830 vs. TrEMBL
Match: tr|A0A0R7JNN6|A0A0R7JNN6_PERPS (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Persicaria posumbu OX=137685 GN=rbcL PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-20
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 5  AHPIKLAFGAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDR 64
          AH I     AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ 
Sbjct: 24 AHDI---LAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEP 82

Query: 65 AA 67
           A
Sbjct: 84 VA 82

[Close]

BLAST of Bhi05G000830 vs. NCBI nr
Match: AAN71864.1 (ribulose-1,5-bisphosphate carboxylase (chloroplast) [Persicaria sagittata])

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-20
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 5  AHPIKLAFGAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDR 64
          AH I     AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ 
Sbjct: 33 AHDI---LAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEP 91

Query: 65 AA 67
           A
Sbjct: 93 VA 91

[Close]

BLAST of Bhi05G000830 vs. NCBI nr
Match: AAN71865.1 (ribulose-1,5-bisphosphate carboxylase (chloroplast) [Persicaria punctata])

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-20
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 5  AHPIKLAFGAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDR 64
          AH I     AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ 
Sbjct: 33 AHDI---LAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEP 91

Query: 65 AA 67
           A
Sbjct: 93 VA 91

[Close]

BLAST of Bhi05G000830 vs. NCBI nr
Match: AAQ24827.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Platysace lanceolata])

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-20
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 14 AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDRAA 67
          AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+  A
Sbjct: 14 AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEAVA 66

[Close]

BLAST of Bhi05G000830 vs. NCBI nr
Match: AAY64544.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Persicaria posumbu])

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-20
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 5  AHPIKLAFGAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDR 64
          AH I     AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ 
Sbjct: 23 AHDI---LAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEP 81

Query: 65 AA 67
           A
Sbjct: 83 VA 81

[Close]

BLAST of Bhi05G000830 vs. NCBI nr
Match: AEK34343.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Persicaria hydropiperoides])

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-20
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 5  AHPIKLAFGAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDR 64
          AH I     AFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ 
Sbjct: 18 AHDI---LAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEP 76

Query: 65 AA 67
           A
Sbjct: 78 VA 76

The following BLAST results are available for this feature:

BLAST of Bhi05G000830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P27064\|RBL_CUCSA	8.0e-23	94.34	Ribulose bisphosphate carboxylase large chain OS=Cucumis sativus OX=3659 GN=rbcL...	[more]
sp\|Q0G9V4\|RBL_DAUCA	8.0e-23	94.34	Ribulose bisphosphate carboxylase large chain OS=Daucus carota OX=4039 GN=rbcL P...	[more]
sp\|P28421\|RBL_HEDHE	8.0e-23	94.34	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Hedera helix OX=4052...	[more]
sp\|P36486\|RBL_SAUCE	8.0e-23	94.34	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Saururus cernuus OX=...	[more]
sp\|O62943\|RBL_SESSE	8.0e-23	94.34	Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban OX=76396 GN=rbc...	[more]

BLAST of Bhi05G000830 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00490.1	8.4e-23	96.00	ribulose-bisphosphate carboxylases	[more]

BLAST of Bhi05G000830 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|H9APC3\|H9APC3_9CARY	1.2e-20	85.48	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Persicaria mitis OX=...	[more]
tr\|B5LBT5\|B5LBT5_9CARY	1.2e-20	85.48	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Persicaria maculosa ...	[more]
tr\|A0A0D3M2Y2\|A0A0D3M2Y2_9CARY	1.2e-20	85.48	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Persicaria maculosa ...	[more]
tr\|H9APC0\|H9APC0_9CARY	1.2e-20	85.48	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Persicaria maculosa ...	[more]
tr\|A0A0R7JNN6\|A0A0R7JNN6_PERPS	1.2e-20	85.48	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Persicaria posumbu O...	[more]

BLAST of Bhi05G000830 vs. NCBI nr


Match Name	E-value	Identity	Description
AAN71864.1	1.9e-20	85.48	ribulose-1,5-bisphosphate carboxylase (chloroplast) [Persicaria sagittata]	[more]
AAN71865.1	1.9e-20	85.48	ribulose-1,5-bisphosphate carboxylase (chloroplast) [Persicaria punctata]	[more]
AAQ24827.1	1.9e-20	94.34	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...	[more]
AAY64544.1	1.9e-20	85.48	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...	[more]
AEK34343.1	1.9e-20	85.48	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015977	carbon fixation

Vocabulary: **Molecular Function**
Term	Definition
GO:0016984	ribulose-bisphosphate carboxylase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR017443	RuBisCO_lsu_fd_N
IPR036422	RuBisCO_lsu_N_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0015977	carbon fixation
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M000830	Bhi05M000830	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	GENE3D	G3DSA:3.30.70.150		coord: 9..67 e-value: 8.6E-20 score: 72.8
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	SUPERFAMILY	SSF54966	RuBisCO, large subunit, small (N-terminal) domain	coord: 13..65
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	PFAM	PF02788	RuBisCO_large_N	coord: 14..65 e-value: 1.9E-16 score: 60.2
None	No IPR available	PANTHER	PTHR42704:SF2	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN	coord: 13..65
None	No IPR available	PANTHER	PTHR42704	FAMILY NOT NAMED	coord: 13..65

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G000830	Wax gourd	wgowgoB002
Bhi05G000830	Cucumber (Gy14) v1	cgywgoB445
Bhi05G000830	Cucumber (Gy14) v2	cgybwgoB632
Bhi05G000830	Cucurbita maxima (Rimu)	cmawgoB0116
Bhi05G000830	Cucurbita maxima (Rimu)	cmawgoB0642
Bhi05G000830	Cucurbita moschata (Rifu)	cmowgoB0120
Bhi05G000830	Cucurbita moschata (Rifu)	cmowgoB0642
Bhi05G000830	Cucurbita pepo (Zucchini)	cpewgoB0317
Bhi05G000830	Cucurbita pepo (Zucchini)	cpewgoB0856
Bhi05G000830	Wild cucumber (PI 183967)	cpiwgoB387
Bhi05G000830	Wild cucumber (PI 183967)	cpiwgoB672
Bhi05G000830	Cucumber (Chinese Long) v3	cucwgoB686
Bhi05G000830	Cucumber (Chinese Long) v2	cuwgoB661
Bhi05G000830	Bottle gourd (USVL1VR-Ls)	lsiwgoB320
Bhi05G000830	Melon (DHL92) v3.6.1	medwgoB225
Bhi05G000830	Melon (DHL92) v3.6.1	medwgoB592
Bhi05G000830	Melon (DHL92) v3.5.1	mewgoB225
Bhi05G000830	Melon (DHL92) v3.5.1	mewgoB586
Bhi05G000830	Watermelon (Charleston Gray)	wcgwgoB277
Bhi05G000830	Watermelon (97103) v2	wgowmbB253
Bhi05G000830	Watermelon (97103) v1	wgowmB279
Bhi05G000830	Watermelon (97103) v1	wgowmB286
Bhi05G000830	Silver-seed gourd	carwgoB0547
Bhi05G000830	Silver-seed gourd	carwgoB0867