Bhi05G000675 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G000675
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr5 : 27973517 .. 27974002 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGACACGAACTCTTACAGCCAATTTTTTCCTTGGACAATCAAATCCGATGGGCACACCATATTCACATCTGATGAACATTTGGGCGATACACATTGCCCTGTTCCACCATTTGGAGTTATGGAAGTAGGTAAGTTGAAGCCGTCAACAAAACTGATATGGTAGAAATCTGTGCCTCCATTTTAAGCTAATGTGAATTCAGCTAACATAGCTGGTGGAATTCCTCCAACGCCATTGCAAAATACAGAGCCAGTGGCACAATCTCCAATTTTACAAGAAAATCTCGAAAAGTCATCTATGGTGCAACCTGTTCAAGCCCAAATTCTACCAGTCCATGGTGTAGGAACATTTATAATCTCATTCTCTCCGGAAGCTAATCCAAATCCAGTGGCAGATAATTGGCTTTGTCTGCTACCACTAGTTAATGTTGTGGGTCATATCGTATGTGTACAACTATTTTTAATCGCAATTTTAGCGGCATAG

mRNA sequence

ATGCGAGACACGAACTCTTACAGCCAATTTTTTCCTTGGACAATCAAATCCGATGGGCACACCATATTCACATCTGATGAACATTTGGGCGATACACATTGCCCTGTTCCACCATTTGGAGTTATGGAAGTAGCTAACATAGCTGGTGGAATTCCTCCAACGCCATTGCAAAATACAGAGCCAGTGGCACAATCTCCAATTTTACAAGAAAATCTCGAAAAGTCATCTATGGTGCAACCTGTTCAAGCCCAAATTCTACCAGTCCATGGTGTAGGAACATTTATAATCTCATTCTCTCCGGAAGCTAATCCAAATCCAGTGGCAGATAATTGGCTTTGTCTGCTACCACTAGTTAATGTTGTGGGTCATATCGTATGTGTACAACTATTTTTAATCGCAATTTTAGCGGCATAG

Coding sequence (CDS)

ATGCGAGACACGAACTCTTACAGCCAATTTTTTCCTTGGACAATCAAATCCGATGGGCACACCATATTCACATCTGATGAACATTTGGGCGATACACATTGCCCTGTTCCACCATTTGGAGTTATGGAAGTAGCTAACATAGCTGGTGGAATTCCTCCAACGCCATTGCAAAATACAGAGCCAGTGGCACAATCTCCAATTTTACAAGAAAATCTCGAAAAGTCATCTATGGTGCAACCTGTTCAAGCCCAAATTCTACCAGTCCATGGTGTAGGAACATTTATAATCTCATTCTCTCCGGAAGCTAATCCAAATCCAGTGGCAGATAATTGGCTTTGTCTGCTACCACTAGTTAATGTTGTGGGTCATATCGTATGTGTACAACTATTTTTAATCGCAATTTTAGCGGCATAG

Protein sequence

MRDTNSYSQFFPWTIKSDGHTIFTSDEHLGDTHCPVPPFGVMEVANIAGGIPPTPLQNTEPVAQSPILQENLEKSSMVQPVQAQILPVHGVGTFIISFSPEANPNPVADNWLCLLPLVNVVGHIVCVQLFLIAILAA

Homology

[Close]

BLAST of Bhi05G000675 vs. TrEMBL
Match: tr|A0A199W1T3|A0A199W1T3_ANACO (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_25315 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.6e-05
Identity = 52/143 (36.36%), Postives = 62/143 (43.36%), Query Frame = 0


Query: 14  TIKSDGHTIFTSDEHLGDTHCP-VPPFGVMEV------------------ANIAGGIPPT 73
           T KSDG T F S  H      P VPP G   +                  A +AGG  P 
Sbjct: 110 TFKSDGQTPFRSTRHPVAVQLPAVPPCGTTSIGKLYLQASIPPLPSSVNSARVAGGAAPV 169

Query: 74  PLQNTEPVAQSPILQENLE-KSSMVQPVQAQILPVHGVGTFIISFSPEANPNPVADNWLC 133
           P Q T P  QSP+ QEN    +S  Q V+ Q  P H  GT I    P A+ NPV D+   
Sbjct: 170 PEQATVPDPQSPVAQENTPVVASAEQSVRPQNRPDHPDGTSIELDCPLASANPVVDSGAV 229

Query: 134 LLPLVNVVGHIVCVQLFLIAILA 137
             P  ++ GH V  QL  I  +A
Sbjct: 230 PAP-DSMPGHTVYPQLLRIVNVA 251

[Close]

BLAST of Bhi05G000675 vs. NCBI nr
Match: OAY83427.1 (hypothetical protein ACMD2_25315 [Ananas comosus])

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 52/143 (36.36%), Postives = 62/143 (43.36%), Query Frame = 0


Query: 14  TIKSDGHTIFTSDEHLGDTHCP-VPPFGVMEV------------------ANIAGGIPPT 73
           T KSDG T F S  H      P VPP G   +                  A +AGG  P 
Sbjct: 110 TFKSDGQTPFRSTRHPVAVQLPAVPPCGTTSIGKLYLQASIPPLPSSVNSARVAGGAAPV 169

Query: 74  PLQNTEPVAQSPILQENLE-KSSMVQPVQAQILPVHGVGTFIISFSPEANPNPVADNWLC 133
           P Q T P  QSP+ QEN    +S  Q V+ Q  P H  GT I    P A+ NPV D+   
Sbjct: 170 PEQATVPDPQSPVAQENTPVVASAEQSVRPQNRPDHPDGTSIELDCPLASANPVVDSGAV 229

Query: 134 LLPLVNVVGHIVCVQLFLIAILA 137
             P  ++ GH V  QL  I  +A
Sbjct: 230 PAP-DSMPGHTVYPQLLRIVNVA 251

The following BLAST results are available for this feature:

BLAST of Bhi05G000675 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi05G000675 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi05G000675 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A199W1T3\|A0A199W1T3_ANACO	8.6e-05	36.36	Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_25315 PE=4 SV=1	[more]

BLAST of Bhi05G000675 vs. NCBI nr


Match Name	E-value	Identity	Description
OAY83427.1	1.3e-04	36.36	hypothetical protein ACMD2_25315 [Ananas comosus]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M000675	Bhi05M000675	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G000675	Cucumber (Gy14) v1	cgywgoB445
Bhi05G000675	Cucumber (Gy14) v2	cgybwgoB632
Bhi05G000675	Cucurbita maxima (Rimu)	cmawgoB0116
Bhi05G000675	Cucurbita maxima (Rimu)	cmawgoB0655
Bhi05G000675	Cucurbita moschata (Rifu)	cmowgoB0118
Bhi05G000675	Cucurbita moschata (Rifu)	cmowgoB0656
Bhi05G000675	Cucurbita pepo (Zucchini)	cpewgoB0329
Bhi05G000675	Cucurbita pepo (Zucchini)	cpewgoB0853
Bhi05G000675	Wild cucumber (PI 183967)	cpiwgoB672
Bhi05G000675	Cucumber (Chinese Long) v3	cucwgoB686
Bhi05G000675	Cucumber (Chinese Long) v2	cuwgoB661
Bhi05G000675	Bottle gourd (USVL1VR-Ls)	lsiwgoB320
Bhi05G000675	Melon (DHL92) v3.6.1	medwgoB220
Bhi05G000675	Melon (DHL92) v3.5.1	mewgoB220
Bhi05G000675	Watermelon (Charleston Gray)	wcgwgoB033
Bhi05G000675	Watermelon (97103) v2	wgowmbB263
Bhi05G000675	Watermelon (97103) v1	wgowmB244
Bhi05G000675	Silver-seed gourd	carwgoB0761
Bhi05G000675	Silver-seed gourd	carwgoB0868