Bhi05G000570 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G000570
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	DNA-(apurinic or apyrimidinic site) lyase
Location	chr5 : 23162448 .. 23164491 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCAGCTTTGCAATTGGGGTTTAGGAGTTTCCTTCATCCCTCCAGGTTTGCCCTTTCACCAAATTTCTTTTCTCTTTTTTTATTTTTTTTTTAAAATTAATTTTTTTGTATCCATCTTTATTCATAAGTTAAGGAAAATTCAATCAAGTCTCTTCAATTTGAATGAAAGTTTGGCTCATTTCATATATGAAAAACAAGTGTTAAATTCTTGGGAAGAGTGAGCTCATTCTCTTGACTGAAATGCTCTCTGCATCTCCTAACTAGAATATGGTTTTGTTACTTGTACTAGTAGTATTTCAATTGACTCATTGTTCATCTGGACTAACCCGGACTCCCCTTAGCCTTGTAGTGAATCAGAGTAGGTTGAGAGTTGCAACATTGATACCTAATGTGCAAAGGAATGTAATAGCGTCGGATCAATCCTCTATAACTTTATCCACACAGAATTCAGAGCCTGGCGGGACAAGGAGAGATATAAGTCTGGTAACAAATTTCGGAAGAGACTATTGTGAGATGGTTTTTGTTTGAGTATATTATGCTTCTCTTCTTTATTCGGATTTAGGGCTTTTACTCAACTTTTACATATAGGAAAATGACTGTAAAGCGGACATTCAAAGTTTTAAGGATGACCTGTCGAGAATTGAGGCTATGACGGTCCAAGAACTAAGAATGACATTGAGGTAATGACATTGAGGTAACAAGTGCATTCCAGTTCCATATGTGTAATAGTATAATAGATCTTTAGCCTGTCTCTTATACACATCTAGATGTGTATAAGAGACAGGTTTTGATGCGTTCCCCCTGTTGAGAATTCTTCATTGGATTTTCAGTTTGGATATTGGCTTGGAGTTTTTGTGCTGCAGCTGCTGGCTGCTGTGTCTCGGCACAAGTGCATTCCAGTTCCATATGTAGTTTGTAATAGTCTATAGATCTCTAGCTTACTTTCTTATTTATCATTTATGTTCACATTTTTCAGAAGCGTAGGTCTTCTAGCCAAAGGGCGTAAGCGTGAACTTGTAACTGCACTGCAATGCTTTGTGGAGAATAAAACAGTTGGTATGCATTATTTGTCTACTGCTTAACATGGCTAGAGATTGGATGTATTGACATGAAACAACAGTTGGTATCATTTATATTCATATAATCATATCTCCTTTTTTTTGCTGTTGGTTTATTTATGAGGCTCAAGAAGAGAAGGGAAGGGGAAAAGAGGACAAATATTTTTAGTCTAGATATTATGAATGGCTATGATGTATTGACATGAAACAACTGCTGAAATTTTATTAGTTGTGTCTATAGGAGATTGGATGGATATTACTGTCTAATAACTGTTTGGCAATGATCATTGGAGCTATTGGCTCTATTGAGAATTAATGTCTATGCCTTCAAAATTACGGAATGAAATATCTACCGGTTTTGTTTTCCAATCCATGTTGTACCGTCATTTTCTAAAAATTTATTGAAGAAGTCATGAAACTTCTAGTCAAAACATTTTAGCATGGGATTTATTGTGAAATTCTATTAATCCAATCTTTGTAAGTTCCCTTCATTATTAATCTGAAGAGCGTTGTCAGAGTTCTGATATTAAAGGTTTAGGTGTCAATAGTCTGTTATAGATATAAGCTCAGTCTTATTATGAAATTGTATGGCAAGTTCTTCCAACTGATTTGTAACCATTGGCCTAGTACTGATTTCAACACTATTAATGAAGTCATCTTATGTTGTTATTAGTTGCTTACTAAGGTAAGTCAGTTGTTTGTGTGTCTACCTTGCGTTTAAATTCTAATCTTCTTTTACGTATTGCTGGCTTGTTTTGATTTATTTTTAACCTTTTTTTTAATATATACTGTTTGTTTTTGGATCAATTTTTTGTTTGTTAACTCTGTAAAAGAATTGTAACTCATAAATTTCCCCTCCCTTCTTCTTCTTCTTCTTCTTTTTTTAATAATTTATTTCTTCGTCTTTTAGCCTCCAAAAAATTAGATCATTCATCAATAATGTCACATATGTTCCACTTGCGGATATTGAAGAACCTCTAA

mRNA sequence

ATGAAGTCAGCTTTGCAATTGGGGTTTAGGAGTTTCCTTCATCCCTCCAGCCTTGTAGTGAATCAGAGTAGGTTGAGAGTTGCAACATTGATACCTAATGTGCAAAGGAATGTAATAGCGTCGGATCAATCCTCTATAACTTTATCCACACAGAATTCAGAGCCTGGCGGGACAAGGAGAGATATAAGTCTGGAAAATGACTGTAAAGCGGACATTCAAAGTTTTAAGGATGACCTGTCGAGAATTGAGGCTATGACGGTCCAAGAACTAAGAATGACATTGAGAAGCGTAGGTCTTCTAGCCAAAGGGCGTAAGCGTGAACTTGTAACTGCACTGCAATGCTTTGTGGAGAATAAAACAGTTGAGCGTTGTCAGAGTTCTGATATTAAAGGTTTAGGTGTCAATAGTCTCCTCCAAAAAATTAGATCATTCATCAATAATGTCACATATGTTCCACTTGCGGATATTGAAGAACCTCTAA

Coding sequence (CDS)

ATGAAGTCAGCTTTGCAATTGGGGTTTAGGAGTTTCCTTCATCCCTCCAGCCTTGTAGTGAATCAGAGTAGGTTGAGAGTTGCAACATTGATACCTAATGTGCAAAGGAATGTAATAGCGTCGGATCAATCCTCTATAACTTTATCCACACAGAATTCAGAGCCTGGCGGGACAAGGAGAGATATAAGTCTGGAAAATGACTGTAAAGCGGACATTCAAAGTTTTAAGGATGACCTGTCGAGAATTGAGGCTATGACGGTCCAAGAACTAAGAATGACATTGAGAAGCGTAGGTCTTCTAGCCAAAGGGCGTAAGCGTGAACTTGTAACTGCACTGCAATGCTTTGTGGAGAATAAAACAGTTGAGCGTTGTCAGAGTTCTGATATTAAAGGTTTAGGTGTCAATAGTCTCCTCCAAAAAATTAGATCATTCATCAATAATGTCACATATGTTCCACTTGCGGATATTGAAGAACCTCTAA

Protein sequence

MKSALQLGFRSFLHPSSLVVNQSRLRVATLIPNVQRNVIASDQSSITLSTQNSEPGGTRRDISLENDCKADIQSFKDDLSRIEAMTVQELRMTLRSVGLLAKGRKRELVTALQCFVENKTVERCQSSDIKGLGVNSLLQKIRSFINNVTYVPLADIEEPL

Homology

[Close]

BLAST of Bhi05G000570 vs. Swiss-Prot
Match: sp|P45951|ARP_ARATH (DNA-(apurinic or apyrimidinic site) lyase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ARP PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 3.6e-05
Identity = 40/142 (28.17%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 1   MKSALQLGFRS--FLHPSSLVVNQSRLRVATLIPNVQRNVIASDQSSITLSTQNSEPGGT 60
           M + LQ G +S        LVV    LRV +    V     + ++  ++ +T  S     
Sbjct: 1   MNNVLQFGLQSSAIYVAKFLVVPLRSLRVGSSFVGVGVGTRSFNKRLMSNATAFSINNSK 60

Query: 61  RRDI-----SLENDC--------KADIQSFKDDLSRIEAMTVQELRMTLRSVGLLAKGRK 120
           R+++     +++ +C        + ++ + +DD   IEAMTVQELR TLR +G+  KGRK
Sbjct: 61  RKELKIPGAAIDQNCHQMGSDTDRDEMGTLQDDRKEIEAMTVQELRSTLRKLGVPVKGRK 120

Query: 121 RELVTALQCFVENKTVERCQSS 128
           +EL++ L+  +++   ++ ++S
Sbjct: 121 QELISTLRLHMDSNLPDQKETS 142

[Close]

BLAST of Bhi05G000570 vs. TAIR10
Match: AT2G41460.1 (apurinic endonuclease-redox protein)

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-06
Identity = 40/142 (28.17%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 1   MKSALQLGFRS--FLHPSSLVVNQSRLRVATLIPNVQRNVIASDQSSITLSTQNSEPGGT 60
           M + LQ G +S        LVV    LRV +    V     + ++  ++ +T  S     
Sbjct: 1   MNNVLQFGLQSSAIYVAKFLVVPLRSLRVGSSFVGVGVGTRSFNKRLMSNATAFSINNSK 60

Query: 61  RRDI-----SLENDC--------KADIQSFKDDLSRIEAMTVQELRMTLRSVGLLAKGRK 120
           R+++     +++ +C        + ++ + +DD   IEAMTVQELR TLR +G+  KGRK
Sbjct: 61  RKELKIPGAAIDQNCHQMGSDTDRDEMGTLQDDRKEIEAMTVQELRSTLRKLGVPVKGRK 120

Query: 121 RELVTALQCFVENKTVERCQSS 128
           +EL++ L+  +++   ++ ++S
Sbjct: 121 QELISTLRLHMDSNLPDQKETS 142

[Close]

BLAST of Bhi05G000570 vs. TrEMBL
Match: tr|A0A1S3B7C7|A0A1S3B7C7_CUCME (DNA-(apurinic or apyrimidinic site) lyase OS=Cucumis melo OX=3656 GN=LOC103486961 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-31
Identity = 87/135 (64.44%), Postives = 102/135 (75.56%), Query Frame = 0


Query: 1   MKSALQLGFRSFLHP-SSLVVNQSRLRVATLIPNVQRNVIAS--DQSSITLSTQNSEPGG 60
           MKS LQL FR FLHP  SL VN+SRLRVATLI  +Q+N ++S  ++SS+ L TQNSEP G
Sbjct: 10  MKSVLQLWFRPFLHPFFSLAVNESRLRVATLIRPLQKNAMSSRLNRSSVPLFTQNSEPRG 69

Query: 61  TRRDISL----------ENDCKADIQSFKDDLSRIEAMTVQELRMTLRSVGLLAKGRKRE 120
             R +S+          E+DCK DIQSF+DD S+IEAMTVQ+LRMTLRSVGLLAKG KR+
Sbjct: 70  AGRGVSVRRNSNEAVVEEHDCKVDIQSFRDDPSKIEAMTVQKLRMTLRSVGLLAKGLKRD 129

Query: 121 LVTALQCFVENKTVE 123
           LV ALQ FVEN TVE
Sbjct: 130 LVAALQSFVENGTVE 144

[Close]

BLAST of Bhi05G000570 vs. TrEMBL
Match: tr|A0A1S3B8L3|A0A1S3B8L3_CUCME (DNA-(apurinic or apyrimidinic site) lyase OS=Cucumis melo OX=3656 GN=LOC103486961 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-31
Identity = 88/140 (62.86%), Postives = 104/140 (74.29%), Query Frame = 0


Query: 1   MKSALQLGFRSFLHP-SSLVVNQSRLRVATLIPNVQRNVIAS--DQSSITLSTQNSEPGG 60
           MKS LQL FR FLHP  SL VN+SRLRVATLI  +Q+N ++S  ++SS+ L TQNSEP G
Sbjct: 10  MKSVLQLWFRPFLHPFFSLAVNESRLRVATLIRPLQKNAMSSRLNRSSVPLFTQNSEPRG 69

Query: 61  TRRDISL----------ENDCKADIQSFKDDLSRIEAMTVQELRMTLRSVGLLAKGRKRE 120
             R +S+          E+DCK DIQSF+DD S+IEAMTVQ+LRMTLRSVGLLAKG KR+
Sbjct: 70  AGRGVSVRRNSNEAVVEEHDCKVDIQSFRDDPSKIEAMTVQKLRMTLRSVGLLAKGLKRD 129

Query: 121 LVTALQCFVENKTVERCQSS 128
           LV ALQ FVEN TV   QS+
Sbjct: 130 LVAALQSFVENGTVVENQST 149

[Close]

BLAST of Bhi05G000570 vs. TrEMBL
Match: tr|A0A0A0LF64|A0A0A0LF64_CUCSA (DNA-(apurinic or apyrimidinic site) lyase OS=Cucumis sativus OX=3659 GN=Csa_3G824160 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-25
Identity = 74/115 (64.35%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 19  VVNQSRLRVATLIPNVQRNVIAS--DQSSITLSTQNSEPGGTRRDISL----------EN 78
           +VNQSRLRVATLI  +Q+N ++S  +QSS+ L T+NSEP    R IS+          E+
Sbjct: 15  LVNQSRLRVATLIRPLQKNAMSSRLNQSSVPLFTKNSEPSRAGRGISVRRNFNETVVQEH 74

Query: 79  DCKADIQSFKDDLSRIEAMTVQELRMTLRSVGLLAKGRKRELVTALQCFVENKTV 122
           DCK DIQSFKDD S+IEAMTVQ+LRMTLRS+GLLAKG KR+LVTALQ FVEN+TV
Sbjct: 75  DCKVDIQSFKDDPSKIEAMTVQKLRMTLRSLGLLAKGLKRDLVTALQSFVENETV 129

[Close]

BLAST of Bhi05G000570 vs. TrEMBL
Match: tr|A0A1S4DUI2|A0A1S4DUI2_CUCME (DNA-(apurinic or apyrimidinic site) lyase OS=Cucumis melo OX=3656 GN=LOC103486961 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.9e-19
Identity = 60/96 (62.50%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 42  DQSSITLSTQNSEPGGTRRDISL----------ENDCKADIQSFKDDLSRIEAMTVQELR 101
           ++SS+ L TQNSEP G  R +S+          E+DCK DIQSF+DD S+IEAMTVQ+LR
Sbjct: 6   NRSSVPLFTQNSEPRGAGRGVSVRRNSNEAVVEEHDCKVDIQSFRDDPSKIEAMTVQKLR 65

Query: 102 MTLRSVGLLAKGRKRELVTALQCFVENKTVERCQSS 128
           MTLRSVGLLAKG KR+LV ALQ FVEN TV   QS+
Sbjct: 66  MTLRSVGLLAKGLKRDLVAALQSFVENGTVVENQST 101

[Close]

BLAST of Bhi05G000570 vs. TrEMBL
Match: tr|A0A2C9V953|A0A2C9V953_MANES (DNA-(apurinic or apyrimidinic site) lyase OS=Manihot esculenta OX=3983 GN=MANES_09G016000 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 58/146 (39.73%), Postives = 89/146 (60.96%), Query Frame = 0


Query: 4   ALQLGFRSFLHPSSLVVNQSRLRVATLIPNVQRNVIASDQSSITLSTQNSEPGGTRRDIS 63
           ALQ+GFR+FL+ SS      +L + +L+ +++  ++ S +    LST +S     ++   
Sbjct: 5   ALQIGFRTFLNLSSFTARPGQLNIESLV-SLRAGIMCSKRPISNLSTISSSINEEKKSKK 64

Query: 64  L-----------ENDCKAD---IQSFKDDLSRIEAMTVQELRMTLRSVGLLAKGRKRELV 123
           L           +N  K +   IQSFKDDLS+IEAMTVQELR TLR+VG+ AKGRK +LV
Sbjct: 65  LKGLKLAIPDSEDNVVKENYQKIQSFKDDLSKIEAMTVQELRTTLRNVGISAKGRKPDLV 124

Query: 124 TALQCFVENKTVERCQSSDIKGLGVN 136
           +AL+ FV +K ++   S +++ +  N
Sbjct: 125 SALKNFV-SKHLDGGSSQEVEQISSN 148

[Close]

BLAST of Bhi05G000570 vs. NCBI nr
Match: XP_022973325.1 (DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X1 [Cucurbita maxima] >XP_022973327.1 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 145.6 bits (366), Expect = 1.5e-31
Identity = 84/131 (64.12%), Postives = 98/131 (74.81%), Query Frame = 0


Query: 1   MKSALQLGFRSFLHPSSLVVNQSRLRVATLIPNVQRNVIASDQSSITLSTQNSEPGGTRR 60
           M S  Q GFRSFL+PSSL VNQSR R+ATL+P +Q   +A ++ S+ LST N+  GGTR+
Sbjct: 1   MNSLFQFGFRSFLNPSSLAVNQSRFRIATLLP-LQTVAMALNRLSVNLSTHNTTTGGTRK 60

Query: 61  DISL----------ENDCKADIQSFKDDLSRIEAMTVQELRMTLRSVGLLAKGRKRELVT 120
           D SL          END K DIQSFKDD S+IEAMTVQELRMTLRSVG+LAKGRK +LV 
Sbjct: 61  DTSLETNSSQIIVEENDSKVDIQSFKDDPSKIEAMTVQELRMTLRSVGILAKGRKHDLVI 120

Query: 121 ALQCFVENKTV 122
           ALQ FVEN+TV
Sbjct: 121 ALQRFVENQTV 130

[Close]

BLAST of Bhi05G000570 vs. NCBI nr
Match: XP_008443352.1 (PREDICTED: DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 2.5e-31
Identity = 88/140 (62.86%), Postives = 104/140 (74.29%), Query Frame = 0


Query: 1   MKSALQLGFRSFLHP-SSLVVNQSRLRVATLIPNVQRNVIAS--DQSSITLSTQNSEPGG 60
           MKS LQL FR FLHP  SL VN+SRLRVATLI  +Q+N ++S  ++SS+ L TQNSEP G
Sbjct: 10  MKSVLQLWFRPFLHPFFSLAVNESRLRVATLIRPLQKNAMSSRLNRSSVPLFTQNSEPRG 69

Query: 61  TRRDISL----------ENDCKADIQSFKDDLSRIEAMTVQELRMTLRSVGLLAKGRKRE 120
             R +S+          E+DCK DIQSF+DD S+IEAMTVQ+LRMTLRSVGLLAKG KR+
Sbjct: 70  AGRGVSVRRNSNEAVVEEHDCKVDIQSFRDDPSKIEAMTVQKLRMTLRSVGLLAKGLKRD 129

Query: 121 LVTALQCFVENKTVERCQSS 128
           LV ALQ FVEN TV   QS+
Sbjct: 130 LVAALQSFVENGTVVENQST 149

[Close]

BLAST of Bhi05G000570 vs. NCBI nr
Match: XP_008443353.1 (PREDICTED: DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 2.5e-31
Identity = 87/135 (64.44%), Postives = 102/135 (75.56%), Query Frame = 0


Query: 1   MKSALQLGFRSFLHP-SSLVVNQSRLRVATLIPNVQRNVIAS--DQSSITLSTQNSEPGG 60
           MKS LQL FR FLHP  SL VN+SRLRVATLI  +Q+N ++S  ++SS+ L TQNSEP G
Sbjct: 10  MKSVLQLWFRPFLHPFFSLAVNESRLRVATLIRPLQKNAMSSRLNRSSVPLFTQNSEPRG 69

Query: 61  TRRDISL----------ENDCKADIQSFKDDLSRIEAMTVQELRMTLRSVGLLAKGRKRE 120
             R +S+          E+DCK DIQSF+DD S+IEAMTVQ+LRMTLRSVGLLAKG KR+
Sbjct: 70  AGRGVSVRRNSNEAVVEEHDCKVDIQSFRDDPSKIEAMTVQKLRMTLRSVGLLAKGLKRD 129

Query: 121 LVTALQCFVENKTVE 123
           LV ALQ FVEN TVE
Sbjct: 130 LVAALQSFVENGTVE 144

[Close]

BLAST of Bhi05G000570 vs. NCBI nr
Match: XP_022949935.1 (DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 144.1 bits (362), Expect = 4.2e-31
Identity = 84/131 (64.12%), Postives = 97/131 (74.05%), Query Frame = 0


Query: 1   MKSALQLGFRSFLHPSSLVVNQSRLRVATLIPNVQRNVIASDQSSITLSTQNSEPGGTRR 60
           M S  Q GFRSFL+PSSL VNQSR R+ATLIP +Q   +A ++ S+ LST N+  GGTR+
Sbjct: 1   MNSLFQFGFRSFLNPSSLAVNQSRFRIATLIP-LQTVAMALNRLSLNLSTHNTTTGGTRK 60

Query: 61  DISL----------ENDCKADIQSFKDDLSRIEAMTVQELRMTLRSVGLLAKGRKRELVT 120
           D SL          END K DIQSFKDD S+IEAMTV ELRMTLRSVG+LAKGRK +LV 
Sbjct: 61  DTSLETNSSEIIVEENDSKVDIQSFKDDPSKIEAMTVHELRMTLRSVGILAKGRKHDLVI 120

Query: 121 ALQCFVENKTV 122
           ALQ FVEN+TV
Sbjct: 121 ALQRFVENQTV 130

[Close]

BLAST of Bhi05G000570 vs. NCBI nr
Match: XP_023520615.1 (DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.7 bits (361), Expect = 5.5e-31
Identity = 84/131 (64.12%), Postives = 97/131 (74.05%), Query Frame = 0


Query: 1   MKSALQLGFRSFLHPSSLVVNQSRLRVATLIPNVQRNVIASDQSSITLSTQNSEPGGTRR 60
           M S  Q GFRSFL+PSSL VNQSR R+ATLIP +Q   +A ++ S+ LST N+  GGTR+
Sbjct: 1   MNSLFQFGFRSFLNPSSLAVNQSRFRIATLIP-LQAVAMALNRPSLNLSTHNTTTGGTRK 60

Query: 61  DISL----------ENDCKADIQSFKDDLSRIEAMTVQELRMTLRSVGLLAKGRKRELVT 120
           D SL          END K  IQSFKDD S+IEAMTVQELRMTLRSVG+LAKGRK +LV 
Sbjct: 61  DTSLETNSSEIIVEENDSKVHIQSFKDDPSKIEAMTVQELRMTLRSVGILAKGRKHDLVI 120

Query: 121 ALQCFVENKTV 122
           ALQ FVEN+TV
Sbjct: 121 ALQRFVENQTV 130

The following BLAST results are available for this feature:

BLAST of Bhi05G000570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P45951\|ARP_ARATH	3.6e-05	28.17	DNA-(apurinic or apyrimidinic site) lyase, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of Bhi05G000570 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41460.1	2.0e-06	28.17	apurinic endonuclease-redox protein	[more]

BLAST of Bhi05G000570 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B7C7\|A0A1S3B7C7_CUCME	1.6e-31	64.44	DNA-(apurinic or apyrimidinic site) lyase OS=Cucumis melo OX=3656 GN=LOC10348696...	[more]
tr\|A0A1S3B8L3\|A0A1S3B8L3_CUCME	1.6e-31	62.86	DNA-(apurinic or apyrimidinic site) lyase OS=Cucumis melo OX=3656 GN=LOC10348696...	[more]
tr\|A0A0A0LF64\|A0A0A0LF64_CUCSA	1.3e-25	64.35	DNA-(apurinic or apyrimidinic site) lyase OS=Cucumis sativus OX=3659 GN=Csa_3G82...	[more]
tr\|A0A1S4DUI2\|A0A1S4DUI2_CUCME	1.9e-19	62.50	DNA-(apurinic or apyrimidinic site) lyase OS=Cucumis melo OX=3656 GN=LOC10348696...	[more]
tr\|A0A2C9V953\|A0A2C9V953_MANES	1.3e-12	39.73	DNA-(apurinic or apyrimidinic site) lyase OS=Manihot esculenta OX=3983 GN=MANES_...	[more]

BLAST of Bhi05G000570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973325.1	1.5e-31	64.12	DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X1 [Cucurbita m...	[more]
XP_008443352.1	2.5e-31	62.86	PREDICTED: DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X1 [...	[more]
XP_008443353.1	2.5e-31	64.44	PREDICTED: DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X2 [...	[more]
XP_022949935.1	4.2e-31	64.12	DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X1 [Cucurbita m...	[more]
XP_023520615.1	5.5e-31	64.12	DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X1 [Cucurbita p...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036361	SAP_dom_sf
IPR003034	SAP_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0004518	nuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M000570	Bhi05M000570	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003034	SAP domain	SMART	SM00513	sap_9	coord: 82..116 e-value: 4.8E-5 score: 32.8
IPR003034	SAP domain	PFAM	PF02037	SAP	coord: 83..115 e-value: 1.1E-6 score: 28.1
IPR003034	SAP domain	PROSITE	PS50800	SAP	coord: 82..116 score: 10.466
IPR036361	SAP domain superfamily	GENE3D	G3DSA:1.10.720.30		coord: 59..156 e-value: 6.8E-9 score: 37.3
IPR036361	SAP domain superfamily	SUPERFAMILY	SSF68906	SAP domain	coord: 80..117

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G000570	Cucumber (Gy14) v1	cgywgoB377
Bhi05G000570	Cucumber (Gy14) v2	cgybwgoB535
Bhi05G000570	Cucurbita maxima (Rimu)	cmawgoB0116
Bhi05G000570	Cucurbita maxima (Rimu)	cmawgoB0655
Bhi05G000570	Cucurbita moschata (Rifu)	cmowgoB0118
Bhi05G000570	Cucurbita moschata (Rifu)	cmowgoB0656
Bhi05G000570	Cucurbita pepo (Zucchini)	cpewgoB0329
Bhi05G000570	Cucurbita pepo (Zucchini)	cpewgoB0853
Bhi05G000570	Wild cucumber (PI 183967)	cpiwgoB565
Bhi05G000570	Cucumber (Chinese Long) v3	cucwgoB578
Bhi05G000570	Cucumber (Chinese Long) v2	cuwgoB560
Bhi05G000570	Bottle gourd (USVL1VR-Ls)	lsiwgoB320
Bhi05G000570	Melon (DHL92) v3.6.1	medwgoB475
Bhi05G000570	Melon (DHL92) v3.5.1	mewgoB473
Bhi05G000570	Watermelon (Charleston Gray)	wcgwgoB036
Bhi05G000570	Watermelon (Charleston Gray)	wcgwgoB045
Bhi05G000570	Watermelon (97103) v2	wgowmbB266
Bhi05G000570	Watermelon (97103) v1	wgowmB246
Bhi05G000570	Silver-seed gourd	carwgoB0761
Bhi05G000570	Silver-seed gourd	carwgoB0868