Bhi05G000474 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G000474
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr5 : 18448749 .. 18449438 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATATGGATGAGATGGCCTATTTGACGATAATTATGTATCTGTCCGATGGAGTGCTTAGGCTACTAAAGCGGAGTCGTGGGAAATTAGAAAGTCTTTATTTGACTAAGTCCTTGCAAAATAAATTATATCTAAAAGAGAAATTCTTTGAATATAAGATGGACTCAAGTAAAGGTTTAGAATATAACCTAGATGAATTTCAGAAGATTATAGTTCATCTCATTAACATCGGTGAGAAGATATCGGATGAAAATCAAGCAGTTATTTTTCTGAATTCTTTGCCTGAATCGTATGGAGAAGTTAAGGCAGCTATTAAATATGGACGGGATTCATTGTCCATGGATATAGTGTTGGATGCCTTGAGAACGAGAAACCTCGAGATTAAAAAGGAACGCAAGGATGGAGAGTTACTCATGGCCAGAGGCAGAAGTGAGAAAAAGAACGGAAAAGAAAAAGAGTCGAGATCCAGGTCGAAATCAAAGGGGAAAACCAAAAAGTGTTTCCTATGTCATAAAGGACACTTTAGAAAAAATTTCCCTTTGAATAAGAGCAAGGAAGAATCAAGTAGCAAGCATGCAGGGGATTCTAGTGCAGCAAATGTTACTGATGTGTATGATTCAGCGGAGGTTTTGATGGTGTCCAGCAAGGACACTGATTTGCCGAATTCCCCGGAAATGGCGCCAAAAAATTGA

mRNA sequence

GATATGGATGAGATGGCCTATTTGACGATAATTATGTATCTGTCCGATGGAGTGCTTAGGCTACTAAAGCGGAGTCGTGGGAAATTAGAAAGTCTTTATTTGACTAAGTCCTTGCAAAATAAATTATATCTAAAAGAGAAATTCTTTGAATATAAGATGGACTCAAGTAAAGGTTTAGAATATAACCTAGATGAATTTCAGAAGATTATAGTTCATCTCATTAACATCGGTGAGAAGATATCGGATGAAAATCAAGCAGTTATTTTTCTGAATTCTTTGCCTGAATCGTATGGAGAAGTTAAGGCAGCTATTAAATATGGACGGGATTCATTGTCCATGGATATAGTGTTGGATGCCTTGAGAACGAGAAACCTCGAGATTAAAAAGGAACGCAAGGATGGAGAGTTACTCATGGCCAGAGGCAGAAGTGAGAAAAAGAACGGAAAAGAAAAAGAGTCGAGATCCAGGTCGAAATCAAAGGGGAAAACCAAAAAGTGTTTCCTATGTCATAAAGGACACTTTAGAAAAAATTTCCCTTTGAATAAGAGCAAGGAAGAATCAAGTAGCAAGCATGCAGGGGATTCTAGTGCAGCAAATGTTACTGATGTGTATGATTCAGCGGAGGTTTTGATGGTGTCCAGCAAGGACACTGATTTGCCGAATTCCCCGGAAATGGCGCCAAAAAATTGA

Coding sequence (CDS)

GATATGGATGAGATGGCCTATTTGACGATAATTATGTATCTGTCCGATGGAGTGCTTAGGCTACTAAAGCGGAGTCGTGGGAAATTAGAAAGTCTTTATTTGACTAAGTCCTTGCAAAATAAATTATATCTAAAAGAGAAATTCTTTGAATATAAGATGGACTCAAGTAAAGGTTTAGAATATAACCTAGATGAATTTCAGAAGATTATAGTTCATCTCATTAACATCGGTGAGAAGATATCGGATGAAAATCAAGCAGTTATTTTTCTGAATTCTTTGCCTGAATCGTATGGAGAAGTTAAGGCAGCTATTAAATATGGACGGGATTCATTGTCCATGGATATAGTGTTGGATGCCTTGAGAACGAGAAACCTCGAGATTAAAAAGGAACGCAAGGATGGAGAGTTACTCATGGCCAGAGGCAGAAGTGAGAAAAAGAACGGAAAAGAAAAAGAGTCGAGATCCAGGTCGAAATCAAAGGGGAAAACCAAAAAGTGTTTCCTATGTCATAAAGGACACTTTAGAAAAAATTTCCCTTTGAATAAGAGCAAGGAAGAATCAAGTAGCAAGCATGCAGGGGATTCTAGTGCAGCAAATGTTACTGATGTGTATGATTCAGCGGAGGTTTTGATGGTGTCCAGCAAGGACACTGATTTGCCGAATTCCCCGGAAATGGCGCCAAAAAATTGA

Protein sequence

DMDEMAYLTIIMYLSDGVLRLLKRSRGKLESLYLTKSLQNKLYLKEKFFEYKMDSSKGLEYNLDEFQKIIVHLINIGEKISDENQAVIFLNSLPESYGEVKAAIKYGRDSLSMDIVLDALRTRNLEIKKERKDGELLMARGRSEKKNGKEKESRSRSKSKGKTKKCFLCHKGHFRKNFPLNKSKEESSSKHAGDSSAANVTDVYDSAEVLMVSSKDTDLPNSPEMAPKN

Homology

[Close]

BLAST of Bhi05G000474 vs. Swiss-Prot
Match: sp|P10978|POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.9e-16
Identity = 63/209 (30.14%), Postives = 102/209 (48.80%), Query Frame = 0


Query: 1   DMDEMAYLTIIMYLSDGVLRLL---KRSRG---KLESLYLTKSLQNKLYLKEKFFEYKMD 60
           D+DE A   I ++LSD V+  +     +RG   +LESLY++K+L NKLYLK++ +   M 
Sbjct: 54  DLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMS 113

Query: 61  SSKGLEYNLDEFQKIIVHLINIGEKISDENQAVIFLNSLPESYGEVKAAIKYGRDSLSMD 120
                  +L+ F  +I  L N+G KI +E++A++ LNSLP SY  +   I +G+ ++ + 
Sbjct: 114 EGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELK 173

Query: 121 IVLDALRTRNLEIKKERKDGELLMARGXXXXXXXXXXXXXXXXXXXXXXXK-------CF 180
            V  AL       KK    G+ L+  G                       +       C+
Sbjct: 174 DVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCY 233

Query: 181 LCHK-GHFRKNFP-LNKSKEESSSKHAGD 195
            C++ GHF+++ P   K K E+S +   D
Sbjct: 234 NCNQPGHFKRDCPNPRKGKGETSGQKNDD 262

[Close]

BLAST of Bhi05G000474 vs. TrEMBL
Match: tr|A0A2P5CTT8|A0A2P5CTT8_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_273130 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.1e-32
Identity = 82/145 (56.55%), Postives = 108/145 (74.48%), Query Frame = 0


Query: 4   EMAYLTIIMYLSDGVLRLLKRSR------GKLESLYLTKSLQNKLYLKEKFFEYKMDSSK 63
           E AY  +I+ L+D VLR +           KL+SLYLTK+L NK+YLKE+ F +KMDS+K
Sbjct: 57  ETAYSLLILNLADNVLRQVDEQDTAAKVWSKLDSLYLTKTLSNKIYLKEQLFGFKMDSTK 116

Query: 64  GLEYNLDEFQKIIVHLINIGEKISDENQAVIFLNSLPESYGEVKAAIKYGRDSLSMDIVL 123
            LE NLD+F++I V L NI EKI+DENQA+I LNSLPESY ++K+ IKYGR+SLS+D VL
Sbjct: 117 SLEDNLDDFKRITVSLANIDEKINDENQAIIILNSLPESYKDLKSTIKYGRESLSLDDVL 176

Query: 124 DALRTRNLEIK-KERKDGELLMARG 142
            ALR+ +LE+K ++R +GE L  RG
Sbjct: 177 RALRSHDLEVKIEKRSNGEGLQVRG 201

[Close]

BLAST of Bhi05G000474 vs. TrEMBL
Match: tr|A0A2P5FC12|A0A2P5FC12_9ROSA (Uncharacterized protein (Fragment) OS=Trema orientalis OX=63057 GN=TorRG33x02_088440 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26
Identity = 72/132 (54.55%), Postives = 97/132 (73.48%), Query Frame = 0


Query: 1   DMDEMAYLTIIMYLSDGVLRLLK------RSRGKLESLYLTKSLQNKLYLKEKFFEYKMD 60
           ++ E AY  II+YL+D VLR +       ++  KLE LYLTKSL N++ LKEKFF ++MD
Sbjct: 54  ELQENAYSIIILYLADNVLRQIDGEDTAFKAWNKLEQLYLTKSLTNRILLKEKFFGFRMD 113

Query: 61  SSKGLEYNLDEFQKIIVHLINIG-EKISDENQAVIFLNSLPESYGEVKAAIKYGRDSLSM 120
           ++K LE NLD+F+KI + L +I  EKI DE+QA+I LNSLP+SY EVKAAIK+GR S+++
Sbjct: 114 TNKNLEQNLDDFKKIAITLASIDEEKIGDESQAIILLNSLPDSYREVKAAIKFGRKSITL 173

Query: 121 DIVLDALRTRNL 126
           D V  ALR+  L
Sbjct: 174 DEVTAALRSWEL 185

[Close]

BLAST of Bhi05G000474 vs. TrEMBL
Match: tr|A0A251V331|A0A251V331_HELAN (Putative zinc finger, CCHC-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr04g0128481 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.3e-26
Identity = 87/229 (37.99%), Postives = 131/229 (57.21%), Query Frame = 0


Query: 1   DMDEMAYLTIIMYLSDGVLRLLKRSR------GKLESLYLTKSLQNKLYLKEKFFEYKMD 60
           D+ E A+  II+ L D VLR + +         KLESLY+TKSL N+LYLK++ + +++ 
Sbjct: 54  DILEKAHSAIILSLGDRVLREVSKETSAAGIWAKLESLYMTKSLANRLYLKKRLYTFQLA 113

Query: 61  SSKGLEYNLDEFQKIIVHLINIGEKISDENQAVIFLNSLPESYGEVKAAIKYGRDSLSMD 120
           S K LE + DEF K+I+ L NI   I DE++A+IFL SLP+++      + YGRDSLSM+
Sbjct: 114 SGKSLEDHTDEFNKVILDLENIDVSIDDEDKAIIFLASLPQTFEHFVDTLMYGRDSLSME 173

Query: 121 IVLDALRTRNLEIKKERKD--GELLMARGXXXXXXXXXXXXXXXXXXXXXXXKCFLCH-K 180
            VL AL ++ L+ + + K+  GE L+ RG                       KC++C+ +
Sbjct: 174 EVLAALNSKELKKRSDAKEEIGEGLVVRG--RPEQKSFKGKNTPRSKSKFKRKCYICNSE 233

Query: 181 GHFRKNFP--LNKSKEESSSKHAGDSSAANVTDVYDSAEVLMVSSKDTD 219
            HF+++ P    K K +S SK     S  +  D Y+SA+VL+VS  + D
Sbjct: 234 KHFKRDCPDRFKKKKYDSGSKSQHGGSPDSSNDGYESADVLVVSKGNQD 280

[Close]

BLAST of Bhi05G000474 vs. TrEMBL
Match: tr|A0A2I0WB13|A0A2I0WB13_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catenatum OX=906689 GN=MA16_Dca013638 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.9e-26
Identity = 110/227 (48.46%), Postives = 151/227 (66.52%), Query Frame = 0


Query: 2   MDEMAYLTIIMYLSDGVLRLLKRSR------GKLESLYLTKSLQNKLYLKEKFFEYKMDS 61
           + + A+ +II+ L+D VLR +   +       KLE LY  K+L N++YLKEKFF YKMD 
Sbjct: 34  IQKKAFSSIILCLADQVLRKVSHVKTVSELWKKLEELYRQKTLPNRIYLKEKFFGYKMDE 93

Query: 62  SKGLEYNLDEFQKIIVHLINIGEKISDENQAVIFLNSLPESYGEVKAAIKYGRDSLSMDI 121
           +K ++ NLDEF K+I+ L N+  KI DE++A+I LNSLP+S    K  +KYGR+++++D 
Sbjct: 94  AKSIDDNLDEFNKLILDLENLEVKIEDEDKAIILLNSLPKSLRNFKETLKYGRETITVDE 153

Query: 122 VLDALRTRNLEIKKERKD--GELLMARG------XXXXXXXXXXXXXXXXXXXXXXXKCF 181
           V +AL ++ L++K   K+  GE L  RG      XXXXXXXXXXXXXXXXXXXX   KC+
Sbjct: 154 VQNALSSKILDMKISEKNHSGEGLHVRGRSQXXXXXXXXXXXXXXXXXXXXXXXKNVKCW 213

Query: 182 LCHK-GHFRKNFPLNKSKEESSSKHAGDSSAANVTDVYDSAEVLMVS 214
            C+K GH R+  P    K++S S+  GD  AA V + YDSA+VL VS
Sbjct: 214 QCNKTGHIRRFCPEKNPKDKSQSQ--GD--AAIVGENYDSADVLNVS 256

[Close]

BLAST of Bhi05G000474 vs. TrEMBL
Match: tr|A5BCG6|A5BCG6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_017116 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.3e-25
Identity = 83/223 (37.22%), Postives = 122/223 (54.71%), Query Frame = 0


Query: 4   EMAYLTIIMYLSDGVLRLLKRSRG------KLESLYLTKSLQNKLYLKEKFFEYKMDSSK 63
           E A   II+ L D +LR + +++       KLESLY+TKSL N+L+ K K + +K+    
Sbjct: 101 EKAQSAIILSLGDTMLREVAKAKPTAELWLKLESLYMTKSLANRLHKKIKLYTFKITPGM 160

Query: 64  GLEYNLDEFQKIIVHLINIGEKISDENQAVIFLNSLPESYGEVKAAIKYGRDSLSMDIVL 123
            +E + D F KII+ L NI   +S+E++A++ L SL  SY  +K AI YGRDS++ D V 
Sbjct: 161 SIEEHFDHFNKIILDLENIDITVSNEDKAILLLTSLDASYTNMKEAIMYGRDSMTFDEVQ 220

Query: 124 DALRTRNLEIKKERKD--GELLMARGXXXXXXXXXXXXXXXXXXXXXXXKCFLCHK-GHF 183
             L  R L+ ++E KD  GE L  RG                       KCF+CHK GHF
Sbjct: 221 SILHPRELQKQEESKDESGEGLNIRGRYDKREKKCKNLKAKSKSNTKKFKCFICHKEGHF 280

Query: 184 RKNFPLNKSKEESSSKHAGDSSAANVTDVYDSAEVLMVSSKDT 218
           +K+   +  ++ +  K   +  AA + D YDSA+VL V+  D+
Sbjct: 281 KKD--CSDKRQNTIKKTVNEGDAAVILDGYDSAKVLNVAEMDS 321

[Close]

BLAST of Bhi05G000474 vs. NCBI nr
Match: PON64464.1 (hypothetical protein TorRG33x02_273130 [Trema orientalis])

HSP 1 Score: 148.3 bits (373), Expect = 3.2e-32
Identity = 82/145 (56.55%), Postives = 108/145 (74.48%), Query Frame = 0


Query: 4   EMAYLTIIMYLSDGVLRLLKRSR------GKLESLYLTKSLQNKLYLKEKFFEYKMDSSK 63
           E AY  +I+ L+D VLR +           KL+SLYLTK+L NK+YLKE+ F +KMDS+K
Sbjct: 57  ETAYSLLILNLADNVLRQVDEQDTAAKVWSKLDSLYLTKTLSNKIYLKEQLFGFKMDSTK 116

Query: 64  GLEYNLDEFQKIIVHLINIGEKISDENQAVIFLNSLPESYGEVKAAIKYGRDSLSMDIVL 123
            LE NLD+F++I V L NI EKI+DENQA+I LNSLPESY ++K+ IKYGR+SLS+D VL
Sbjct: 117 SLEDNLDDFKRITVSLANIDEKINDENQAIIILNSLPESYKDLKSTIKYGRESLSLDDVL 176

Query: 124 DALRTRNLEIK-KERKDGELLMARG 142
            ALR+ +LE+K ++R +GE L  RG
Sbjct: 177 RALRSHDLEVKIEKRSNGEGLQVRG 201

[Close]

BLAST of Bhi05G000474 vs. NCBI nr
Match: PON95322.1 (hypothetical protein TorRG33x02_088440, partial [Trema orientalis])

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-26
Identity = 72/132 (54.55%), Postives = 97/132 (73.48%), Query Frame = 0


Query: 1   DMDEMAYLTIIMYLSDGVLRLLK------RSRGKLESLYLTKSLQNKLYLKEKFFEYKMD 60
           ++ E AY  II+YL+D VLR +       ++  KLE LYLTKSL N++ LKEKFF ++MD
Sbjct: 54  ELQENAYSIIILYLADNVLRQIDGEDTAFKAWNKLEQLYLTKSLTNRILLKEKFFGFRMD 113

Query: 61  SSKGLEYNLDEFQKIIVHLINIG-EKISDENQAVIFLNSLPESYGEVKAAIKYGRDSLSM 120
           ++K LE NLD+F+KI + L +I  EKI DE+QA+I LNSLP+SY EVKAAIK+GR S+++
Sbjct: 114 TNKNLEQNLDDFKKIAITLASIDEEKIGDESQAIILLNSLPDSYREVKAAIKFGRKSITL 173

Query: 121 DIVLDALRTRNL 126
           D V  ALR+  L
Sbjct: 174 DEVTAALRSWEL 185

[Close]

BLAST of Bhi05G000474 vs. NCBI nr
Match: OTG30017.1 (putative zinc finger, CCHC-type [Helianthus annuus])

HSP 1 Score: 128.3 bits (321), Expect = 3.4e-26
Identity = 87/229 (37.99%), Postives = 131/229 (57.21%), Query Frame = 0


Query: 1   DMDEMAYLTIIMYLSDGVLRLLKRSR------GKLESLYLTKSLQNKLYLKEKFFEYKMD 60
           D+ E A+  II+ L D VLR + +         KLESLY+TKSL N+LYLK++ + +++ 
Sbjct: 54  DILEKAHSAIILSLGDRVLREVSKETSAAGIWAKLESLYMTKSLANRLYLKKRLYTFQLA 113

Query: 61  SSKGLEYNLDEFQKIIVHLINIGEKISDENQAVIFLNSLPESYGEVKAAIKYGRDSLSMD 120
           S K LE + DEF K+I+ L NI   I DE++A+IFL SLP+++      + YGRDSLSM+
Sbjct: 114 SGKSLEDHTDEFNKVILDLENIDVSIDDEDKAIIFLASLPQTFEHFVDTLMYGRDSLSME 173

Query: 121 IVLDALRTRNLEIKKERKD--GELLMARGXXXXXXXXXXXXXXXXXXXXXXXKCFLCH-K 180
            VL AL ++ L+ + + K+  GE L+ RG                       KC++C+ +
Sbjct: 174 EVLAALNSKELKKRSDAKEEIGEGLVVRG--RPEQKSFKGKNTPRSKSKFKRKCYICNSE 233

Query: 181 GHFRKNFP--LNKSKEESSSKHAGDSSAANVTDVYDSAEVLMVSSKDTD 219
            HF+++ P    K K +S SK     S  +  D Y+SA+VL+VS  + D
Sbjct: 234 KHFKRDCPDRFKKKKYDSGSKSQHGGSPDSSNDGYESADVLVVSKGNQD 280

[Close]

BLAST of Bhi05G000474 vs. NCBI nr
Match: PKU72844.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum])

HSP 1 Score: 127.5 bits (319), Expect = 5.9e-26
Identity = 110/227 (48.46%), Postives = 151/227 (66.52%), Query Frame = 0


Query: 2   MDEMAYLTIIMYLSDGVLRLLKRSR------GKLESLYLTKSLQNKLYLKEKFFEYKMDS 61
           + + A+ +II+ L+D VLR +   +       KLE LY  K+L N++YLKEKFF YKMD 
Sbjct: 34  IQKKAFSSIILCLADQVLRKVSHVKTVSELWKKLEELYRQKTLPNRIYLKEKFFGYKMDE 93

Query: 62  SKGLEYNLDEFQKIIVHLINIGEKISDENQAVIFLNSLPESYGEVKAAIKYGRDSLSMDI 121
           +K ++ NLDEF K+I+ L N+  KI DE++A+I LNSLP+S    K  +KYGR+++++D 
Sbjct: 94  AKSIDDNLDEFNKLILDLENLEVKIEDEDKAIILLNSLPKSLRNFKETLKYGRETITVDE 153

Query: 122 VLDALRTRNLEIKKERKD--GELLMARG------XXXXXXXXXXXXXXXXXXXXXXXKCF 181
           V +AL ++ L++K   K+  GE L  RG      XXXXXXXXXXXXXXXXXXXX   KC+
Sbjct: 154 VQNALSSKILDMKISEKNHSGEGLHVRGRSQXXXXXXXXXXXXXXXXXXXXXXXKNVKCW 213

Query: 182 LCHK-GHFRKNFPLNKSKEESSSKHAGDSSAANVTDVYDSAEVLMVS 214
            C+K GH R+  P    K++S S+  GD  AA V + YDSA+VL VS
Sbjct: 214 QCNKTGHIRRFCPEKNPKDKSQSQ--GD--AAIVGENYDSADVLNVS 256

[Close]

BLAST of Bhi05G000474 vs. NCBI nr
Match: CAN70013.1 (hypothetical protein VITISV_017116 [Vitis vinifera])

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-24
Identity = 83/223 (37.22%), Postives = 122/223 (54.71%), Query Frame = 0


Query: 4   EMAYLTIIMYLSDGVLRLLKRSRG------KLESLYLTKSLQNKLYLKEKFFEYKMDSSK 63
           E A   II+ L D +LR + +++       KLESLY+TKSL N+L+ K K + +K+    
Sbjct: 101 EKAQSAIILSLGDTMLREVAKAKPTAELWLKLESLYMTKSLANRLHKKIKLYTFKITPGM 160

Query: 64  GLEYNLDEFQKIIVHLINIGEKISDENQAVIFLNSLPESYGEVKAAIKYGRDSLSMDIVL 123
            +E + D F KII+ L NI   +S+E++A++ L SL  SY  +K AI YGRDS++ D V 
Sbjct: 161 SIEEHFDHFNKIILDLENIDITVSNEDKAILLLTSLDASYTNMKEAIMYGRDSMTFDEVQ 220

Query: 124 DALRTRNLEIKKERKD--GELLMARGXXXXXXXXXXXXXXXXXXXXXXXKCFLCHK-GHF 183
             L  R L+ ++E KD  GE L  RG                       KCF+CHK GHF
Sbjct: 221 SILHPRELQKQEESKDESGEGLNIRGRYDKREKKCKNLKAKSKSNTKKFKCFICHKEGHF 280

Query: 184 RKNFPLNKSKEESSSKHAGDSSAANVTDVYDSAEVLMVSSKDT 218
           +K+   +  ++ +  K   +  AA + D YDSA+VL V+  D+
Sbjct: 281 KKD--CSDKRQNTIKKTVNEGDAAVILDGYDSAKVLNVAEMDS 321

The following BLAST results are available for this feature:

BLAST of Bhi05G000474 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P10978\|POLX_TOBAC	4.9e-16	30.14	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Bhi05G000474 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi05G000474 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5CTT8\|A0A2P5CTT8_9ROSA	2.1e-32	56.55	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_273130 PE=4 S...	[more]
tr\|A0A2P5FC12\|A0A2P5FC12_9ROSA	1.3e-26	54.55	Uncharacterized protein (Fragment) OS=Trema orientalis OX=63057 GN=TorRG33x02_08...	[more]
tr\|A0A251V331\|A0A251V331_HELAN	2.3e-26	37.99	Putative zinc finger, CCHC-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr04g01...	[more]
tr\|A0A2I0WB13\|A0A2I0WB13_9ASPA	3.9e-26	48.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catena...	[more]
tr\|A5BCG6\|A5BCG6_VITVI	7.3e-25	37.22	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_017116 PE=4 SV=1	[more]

BLAST of Bhi05G000474 vs. NCBI nr


Match Name	E-value	Identity	Description
PON64464.1	3.2e-32	56.55	hypothetical protein TorRG33x02_273130 [Trema orientalis]	[more]
PON95322.1	2.0e-26	54.55	hypothetical protein TorRG33x02_088440, partial [Trema orientalis]	[more]
OTG30017.1	3.4e-26	37.99	putative zinc finger, CCHC-type [Helianthus annuus]	[more]
PKU72844.1	5.9e-26	48.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatu...	[more]
CAN70013.1	1.1e-24	37.22	hypothetical protein VITISV_017116 [Vitis vinifera]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M000474	Bhi05M000474	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 6..124 e-value: 3.9E-21 score: 75.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..229
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 28..129

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G000474	Bottle gourd (USVL1VR-Ls)	lsiwgoB461
Bhi05G000474	Watermelon (Charleston Gray)	wcgwgoB034
Bhi05G000474	Watermelon (97103) v2	wgowmbB264
Bhi05G000474	Watermelon (97103) v1	wgowmB255
Bhi05G000474	Silver-seed gourd	carwgoB0838
Bhi05G000474	Cucurbita maxima (Rimu)	cmawgoB0662
Bhi05G000474	Cucurbita maxima (Rimu)	cmawgoB0736
Bhi05G000474	Cucurbita moschata (Rifu)	cmowgoB0648
Bhi05G000474	Cucurbita moschata (Rifu)	cmowgoB0729
Bhi05G000474	Cucurbita pepo (Zucchini)	cpewgoB0325
Bhi05G000474	Cucurbita pepo (Zucchini)	cpewgoB0931