Bhi05G000427 (gene) Wax gourd

Overview
NameBhi05G000427
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionhigh mobility group B protein 9
Locationchr5 : 15580798 .. 15581342 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGGAAATTTGATTGTGGTTACCTTGTGACTGTGAAATTGGGATCTGAGGTTCTTAGAGGAGTTCTTGACCATCCAGAGTAGCCACCTCCTTTAGATCTCCAGCCTCTGTCTACCAATGCCATTGTTCCATACACCGGTGGCAGATATCGACATTCCAGTAGGCTACATCCAGAAGGAGCCGGAGAAAGGGAGATCTGAATCACTCAAAACCAAACAGATATGGGTATAATTTCTTCCTTGCAGAGAAGCATTACAAGCTCAAATCTTTGTACCCAAATAGAGAAGGGTAGTTCATAAGATGATTGAAGAGTCTTGGAATAGACTTACCCCTGTAGAAAGGATGATATGTCTTTTCAAGCATTTTTGTTCTCTTAGTTTCAAGAGTTGTTATAAACTTTTGTGGTTTGATTCTATAATAGGTTTATCAAAACATTGGGCTGAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTATAAGGAGAAAATGAGGCACGCAAGTGATGTTGATGGAGTTTATTCAAAACATGGAGAGTAG

mRNA sequence

ATGGATGGGAAATTTGATTGTGGTTACCTTGTGACTGTGAAATTGGGATCTGAGGTTCTTAGAGGAGTTCTTGACCATCCAGACCTCTGTCTACCAATGCCATTGTTCCATACACCGGTGGCAGATATCGACATTCCAGTAGGCTACATCCAGAAGGAGCCGGAGAAAGGGAGATCTGAATCACTCAAAACCAAACAGATATGGGTTTATCAAAACATTGGGCTGAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTATAAGGAGAAAATGAGGCACGCAAGTGATGTTGATGGAGTTTATTCAAAACATGGAGAGTAG

Coding sequence (CDS)

ATGGATGGGAAATTTGATTGTGGTTACCTTGTGACTGTGAAATTGGGATCTGAGGTTCTTAGAGGAGTTCTTGACCATCCAGACCTCTGTCTACCAATGCCATTGTTCCATACACCGGTGGCAGATATCGACATTCCAGTAGGCTACATCCAGAAGGAGCCGGAGAAAGGGAGATCTGAATCACTCAAAACCAAACAGATATGGGTTTATCAAAACATTGGGCTGAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTATAAGGAGAAAATGAGGCACGCAAGTGATGTTGATGGAGTTTATTCAAAACATGGAGAGTAG

Protein sequence

MDGKFDCGYLVTVKLGSEVLRGVLDHPDLCLPMPLFHTPVADIDIPVGYIQKEPEKGRSESLKTKQIWVYQNIGLKDKERYKRELKEYKEKMRHASDVDGVYSKHGE
Homology
[Close]
BLAST of Bhi05G000427 vs. Swiss-Prot
Match: sp|Q9SGS2|HMGB9_ARATH (High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-09
Identity = 48/145 (33.10%), Postives = 62/145 (42.76%), Query Frame = 0 

Query: 1   MDGKFDCGYLVTVKLGSEVLRGVLDHPDLCLPMPLFHTPVADIDIPVGYIQ--------- 60
           ++GKFDCGYLV VKLGSE+L GVL H     P P         +  V Y++         
Sbjct: 184 IEGKFDCGYLVKVKLGSEILNGVLYHS--AQPGPSSSPTAVLNNAVVPYVETGRXXXXXX 243

Query: 61  -----------KEPEKGRS--------------------------------ESLKTKQIW 94
                        P+  RS                                 +L T++  
Sbjct: 244 XXXXXXXXXDPNYPKPNRSGYNFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERM 303

[Close]
BLAST of Bhi05G000427 vs. Swiss-Prot
Match: sp|Q9LTT3|HMG10_ARATH (High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.8e-05
Identity = 43/133 (32.33%), Postives = 56/133 (42.11%), Query Frame = 0 

Query: 1   MDGKFDCGYLVTVKLGSEVLRGVLDH--------------PDLCL--------------- 60
           +DGKFD GYLVT+KLGS+ L+GVL H              P   +               
Sbjct: 173 IDGKFDSGYLVTMKLGSQELKGVLYHIPQTPSQSQQTMETPSAIVQSSQRRHRKKSKLAV 232

Query: 61  ---PMPLFHTPVADIDIPVGYIQKEPEKGRSESLKTKQI---W---------VYQNIGLK 90
                P  H    +      Y + +PE    E   TK+I   W         VYQ+ G+K
Sbjct: 233 VDTQKPKCHRSGYNFFFAEQYARLKPEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVK 292

[Close]
BLAST of Bhi05G000427 vs. TAIR10
Match: AT1G76110.1 (HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain)

HSP 1 Score: 63.5 bits (153), Expect = 8.8e-11
Identity = 48/145 (33.10%), Postives = 62/145 (42.76%), Query Frame = 0 

Query: 1   MDGKFDCGYLVTVKLGSEVLRGVLDHPDLCLPMPLFHTPVADIDIPVGYIQ--------- 60
           ++GKFDCGYLV VKLGSE+L GVL H     P P         +  V Y++         
Sbjct: 184 IEGKFDCGYLVKVKLGSEILNGVLYHS--AQPGPSSSPTAVLNNAVVPYVETGRXXXXXX 243

Query: 61  -----------KEPEKGRS--------------------------------ESLKTKQIW 94
                        P+  RS                                 +L T++  
Sbjct: 244 XXXXXXXXXDPNYPKPNRSGYNFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERM 303

[Close]
BLAST of Bhi05G000427 vs. TAIR10
Match: AT3G13350.1 (HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain)

HSP 1 Score: 50.1 bits (118), Expect = 1.0e-06
Identity = 43/133 (32.33%), Postives = 56/133 (42.11%), Query Frame = 0 

Query: 1   MDGKFDCGYLVTVKLGSEVLRGVLDH--------------PDLCL--------------- 60
           +DGKFD GYLVT+KLGS+ L+GVL H              P   +               
Sbjct: 173 IDGKFDSGYLVTMKLGSQELKGVLYHIPQTPSQSQQTMETPSAIVQSSQRRHRKKSKLAV 232

Query: 61  ---PMPLFHTPVADIDIPVGYIQKEPEKGRSESLKTKQI---W---------VYQNIGLK 90
                P  H    +      Y + +PE    E   TK+I   W         VYQ+ G+K
Sbjct: 233 VDTQKPKCHRSGYNFFFAEQYARLKPEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVK 292

[Close]
BLAST of Bhi05G000427 vs. TrEMBL
Match: tr|A0A1S3BUE9|A0A1S3BUE9_CUCME (high mobility group B protein 9 OS=Cucumis melo OX=3656 GN=LOC103493788 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.5e-17
Identity = 65/156 (41.67%), Postives = 75/156 (48.08%), Query Frame = 0 

Query: 1   MDGKFDCGYLVTVKLGSEVLRGVLDHPDLCLPMPL----------------FHTPVADID 60
           +DGKFDCGYLVTVKLGSEVLRGVL HP+   P  L                 H+      
Sbjct: 169 IDGKFDCGYLVTVKLGSEVLRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSXXXXXX 228

Query: 61  IPVGYIQKEPEKGRS--------------------------------ESLKTKQIWVYQN 108
                    P+  RS                                 +L  ++  VYQN
Sbjct: 229 XXXXGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQN 288

[Close]
BLAST of Bhi05G000427 vs. TrEMBL
Match: tr|E5GCD0|E5GCD0_CUCME (High mobility group family OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.5e-17
Identity = 65/156 (41.67%), Postives = 75/156 (48.08%), Query Frame = 0 

Query: 1   MDGKFDCGYLVTVKLGSEVLRGVLDHPDLCLPMPL----------------FHTPVADID 60
           +DGKFDCGYLVTVKLGSEVLRGVL HP+   P  L                 H+      
Sbjct: 169 IDGKFDCGYLVTVKLGSEVLRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSXXXXXX 228

Query: 61  IPVGYIQKEPEKGRS--------------------------------ESLKTKQIWVYQN 108
                    P+  RS                                 +L  ++  VYQN
Sbjct: 229 XXXXGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQN 288

[Close]
BLAST of Bhi05G000427 vs. TrEMBL
Match: tr|A0A0A0L181|A0A0A0L181_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652850 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-16
Identity = 68/159 (42.77%), Postives = 79/159 (49.69%), Query Frame = 0 

Query: 1   MDGKFDCGYLVTVKLGSEVLRGVLDHPDLCLPMPLFHTPVADIDIPVGYI---------- 60
           +DGKFDCGYLVTVKLGSEVLRGVL HPD   P P    P++   I V Y           
Sbjct: 169 IDGKFDCGYLVTVKLGSEVLRGVLYHPD--QPPPSDLRPLSTNAI-VPYTGGRYRHSGRR 228

Query: 61  ---------QKEPEKGRS--------------------------------ESLKTKQIWV 108
                       P+  RS                                 +L  ++  V
Sbjct: 229 HRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMV 288

[Close]
BLAST of Bhi05G000427 vs. TrEMBL
Match: tr|A0A1R3HYL7|A0A1R3HYL7_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_26067 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.2e-15
Identity = 53/106 (50.00%), Postives = 66/106 (62.26%), Query Frame = 0 

Query: 1   MDGKFDCGYLVTVKLGSEVLRGVLDHPDLCLPMPLFHTPVADIDIPVGYIQKEPEK---- 60
           +DGKFDCGYL++V+LGSEVL GVL HP+          P   +  P       PE+    
Sbjct: 135 IDGKFDCGYLISVRLGSEVLSGVLYHPE---------KPGPSVSGPEYNKALVPEREFTK 194

Query: 61  --GRS-ESLKTKQIWVYQNIGLKDKERYKRELKEYKEKMRHASDVD 100
             G S  SL  ++  VYQNIGLKDKERYKRELKEYKE+++ A  V+
Sbjct: 195 MIGESWNSLSPEERMVYQNIGLKDKERYKRELKEYKERLKTAEGVE 231

[Close]
BLAST of Bhi05G000427 vs. TrEMBL
Match: tr|A0A1Q3ALT6|A0A1Q3ALT6_CEPFO (HMG_box domain-containing protein/ARID domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_00230 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.9e-13
Identity = 65/150 (43.33%), Postives = 75/150 (50.00%), Query Frame = 0 

Query: 1   MDGKFDCGYLVTVKLGSEVLRGVLDHPD---LCLPMP------LFHTP------------ 60
           +DGKFDCGYLVTVKLGSE+L GVL HP+    C P+P      + +TP            
Sbjct: 174 IDGKFDCGYLVTVKLGSEILNGVLYHPEQPGSCTPIPEPNSAIVPYTPNCKPGHSGRRRR 233

Query: 61  ---VADIDIP----VGYIQKEPEK-------------------GRS-ESLKTKQIWVYQN 101
                D   P     GY     EK                   G S  SL  ++  VYQN
Sbjct: 234 SRRSGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWSSLSPEERTVYQN 293

[Close]
BLAST of Bhi05G000427 vs. NCBI nr
Match: XP_008452910.1 (PREDICTED: high mobility group B protein 9 [Cucumis melo] >ADN34129.1 high mobility group family [Cucumis melo subsp. melo])

HSP 1 Score: 96.3 bits (238), Expect = 6.8e-17
Identity = 65/156 (41.67%), Postives = 75/156 (48.08%), Query Frame = 0 

Query: 1   MDGKFDCGYLVTVKLGSEVLRGVLDHPDLCLPMPL----------------FHTPVADID 60
           +DGKFDCGYLVTVKLGSEVLRGVL HP+   P  L                 H+      
Sbjct: 169 IDGKFDCGYLVTVKLGSEVLRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSXXXXXX 228

Query: 61  IPVGYIQKEPEKGRS--------------------------------ESLKTKQIWVYQN 108
                    P+  RS                                 +L  ++  VYQN
Sbjct: 229 XXXXGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQN 288

[Close]
BLAST of Bhi05G000427 vs. NCBI nr
Match: XP_004145526.1 (PREDICTED: high mobility group B protein 9 [Cucumis sativus] >KGN55473.1 hypothetical protein Csa_4G652850 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 68/159 (42.77%), Postives = 79/159 (49.69%), Query Frame = 0 

Query: 1   MDGKFDCGYLVTVKLGSEVLRGVLDHPDLCLPMPLFHTPVADIDIPVGYI---------- 60
           +DGKFDCGYLVTVKLGSEVLRGVL HPD   P P    P++   I V Y           
Sbjct: 169 IDGKFDCGYLVTVKLGSEVLRGVLYHPD--QPPPSDLRPLSTNAI-VPYTGGRYRHSGRR 228

Query: 61  ---------QKEPEKGRS--------------------------------ESLKTKQIWV 108
                       P+  RS                                 +L  ++  V
Sbjct: 229 HRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMV 288

[Close]
BLAST of Bhi05G000427 vs. NCBI nr
Match: XP_022140929.1 (high mobility group B protein 9 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 2.0e-16
Identity = 66/156 (42.31%), Postives = 79/156 (50.64%), Query Frame = 0 

Query: 1   MDGKFDCGYLVTVKLGSEVLRGVLDHPDLCLPMPLFHTPV-ADIDIPVGYIQ-------- 60
           +DGKFDCGYLVTVKLGSEVLRGVL HP+   P  L    + A +    G ++        
Sbjct: 208 IDGKFDCGYLVTVKLGSEVLRGVLYHPEQPSPSNLRPQSINAIVPYTGGRLRHSGRRHRR 267

Query: 61  -------KEPEKGRS--------------------------------ESLKTKQIWVYQN 108
                    P+  RS                                 +L  ++  VYQN
Sbjct: 268 SRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERTVYQN 327

[Close]
BLAST of Bhi05G000427 vs. NCBI nr
Match: XP_022982046.1 (high mobility group B protein 9-like [Cucurbita maxima] >XP_022982047.1 high mobility group B protein 9-like [Cucurbita maxima])

HSP 1 Score: 94.4 bits (233), Expect = 2.6e-16
Identity = 68/157 (43.31%), Postives = 76/157 (48.41%), Query Frame = 0 

Query: 1   MDGKFDCGYLVTVKLGSEVLRGVLDHPDLCLPMPLFHTPVADIDIPVGYIQK-------- 60
           +DGKFDCGYLVTVKLGSEVLRGVL HPD  +P  L       I    G  Q+        
Sbjct: 166 IDGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSNLRPQSTNAIIPYTGGRQRHAGRRXXX 225

Query: 61  --------EPEKGRS--------------------------------ESLKTKQIWVYQN 108
                    P+  RS                                  L  ++  VYQN
Sbjct: 226 XXXXADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQN 285

[Close]
BLAST of Bhi05G000427 vs. NCBI nr
Match: XP_022940771.1 (high mobility group B protein 9-like isoform X1 [Cucurbita moschata] >XP_022940772.1 high mobility group B protein 9-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 91.3 bits (225), Expect = 2.2e-15
Identity = 67/157 (42.68%), Postives = 75/157 (47.77%), Query Frame = 0 

Query: 1   MDGKFDCGYLVTVKLGSEVLRGVLDHPDLCLPMPLFHTPVADIDIPVGYIQK-------- 60
           +DGKFDCGYLVTVKLGSEVLRGVL HPD  +P  L       I    G  Q+        
Sbjct: 203 IDGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSDLRPQSTNAIIPYTGGRQRHAGRXXXX 262

Query: 61  --------EPEKGRS--------------------------------ESLKTKQIWVYQN 108
                    P+  RS                                  L  ++  VYQN
Sbjct: 263 XXXXTDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQN 322

The following BLAST results are available for this feature:
BLAST of Bhi05G000427 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SGS2|HMGB9_ARATH1.6e-0933.10High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV... [more]
sp|Q9LTT3|HMG10_ARATH1.8e-0532.33High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 ... [more]
BLAST of Bhi05G000427 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G76110.18.8e-1133.10HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain[more]
AT3G13350.11.0e-0632.33HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain[more]
BLAST of Bhi05G000427 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BUE9|A0A1S3BUE9_CUCME4.5e-1741.67high mobility group B protein 9 OS=Cucumis melo OX=3656 GN=LOC103493788 PE=4 SV=... [more]
tr|E5GCD0|E5GCD0_CUCME4.5e-1741.67High mobility group family OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A0A0L181|A0A0A0L181_CUCSA1.0e-1642.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652850 PE=4 SV=1[more]
tr|A0A1R3HYL7|A0A1R3HYL7_9ROSI4.2e-1550.00Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_26067 PE=4 SV=1[more]
tr|A0A1Q3ALT6|A0A1Q3ALT6_CEPFO3.9e-1343.33HMG_box domain-containing protein/ARID domain-containing protein OS=Cephalotus f... [more]
BLAST of Bhi05G000427 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008452910.16.8e-1741.67PREDICTED: high mobility group B protein 9 [Cucumis melo] >ADN34129.1 high mobil... [more]
XP_004145526.11.5e-1642.77PREDICTED: high mobility group B protein 9 [Cucumis sativus] >KGN55473.1 hypothe... [more]
XP_022140929.12.0e-1642.31high mobility group B protein 9 [Momordica charantia][more]
XP_022982046.12.6e-1643.31high mobility group B protein 9-like [Cucurbita maxima] >XP_022982047.1 high mob... [more]
XP_022940771.12.2e-1542.68high mobility group B protein 9-like isoform X1 [Cucurbita moschata] >XP_0229407... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi05M000427Bhi05M000427mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 78..98
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 61..97
NoneNo IPR availablePANTHERPTHR13711:SF299HIGH MOBILITY GROUP B PROTEIN 9coord: 61..97
IPR036910High mobility group box domain superfamilySUPERFAMILYSSF47095HMG-boxcoord: 61..93

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi05G000427Cucumber (Gy14) v1cgywgoB625
Bhi05G000427Cucumber (Gy14) v2cgybwgoB292
Bhi05G000427Cucurbita maxima (Rimu)cmawgoB0646
Bhi05G000427Cucurbita maxima (Rimu)cmawgoB0737
Bhi05G000427Cucurbita moschata (Rifu)cmowgoB0645
Bhi05G000427Cucurbita moschata (Rifu)cmowgoB0728
Bhi05G000427Cucurbita pepo (Zucchini)cpewgoB0320
Bhi05G000427Cucurbita pepo (Zucchini)cpewgoB0930
Bhi05G000427Wild cucumber (PI 183967)cpiwgoB305
Bhi05G000427Cucumber (Chinese Long) v3cucwgoB307
Bhi05G000427Cucumber (Chinese Long) v2cuwgoB302
Bhi05G000427Bottle gourd (USVL1VR-Ls)lsiwgoB460
Bhi05G000427Melon (DHL92) v3.6.1medwgoB409
Bhi05G000427Melon (DHL92) v3.5.1mewgoB407
Bhi05G000427Watermelon (Charleston Gray)wcgwgoB034
Bhi05G000427Watermelon (97103) v2wgowmbB264
Bhi05G000427Watermelon (97103) v1wgowmB242
Bhi05G000427Silver-seed gourdcarwgoB0268
Bhi05G000427Silver-seed gourdcarwgoB0918