Bhi05G000380 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G000380
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr5 : 13520665 .. 13521150 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCACAGATTTCTTAGCGAAAAGGAAGAAGACCAAGGAAAATGAAGAGGAAACGTCAGAATCTGATGAAGATCGTGAAGAGAAGCCAAAGGGCAATGCCAAGAAAGAGATGTCTTCCAACGATGGTGAAGGTAATCCCTTCAAATTCAAGAGACCTAAGCCTTGTTTCTTTTGTAAAGGGCCACATTGGACTAGGGATTGTCCAGTTAAGCAGAAACTGAAAACCCTAGTTAATGAGTCCCTTGAGACAAAAGCACAAATTGGGTCCATATACCAGATTGGGGCCATAGTCAAGGAAGTATCTTCAAAGAATGAAGGGAAAGAAACCAAAGAGGCCGAGACTAAACCCAAAAGCAAAAAGAGTGAATGGCTGAGGTTAGCCTCCCTTAAGAGTAACAAGGGAGACATGAACAAGTCTGAGGCATTGAAGGAAAGATTAGCCAAGCAATCAAAGGAAGGATGCATGAGGAGACACCGGCACTAG

mRNA sequence

ATGCTCACAGATTTCTTAGCGAAAAGGAAGAAGACCAAGGAAAATGAAGAGGAAACGTCAGAATCTGATGAAGATCGTGAAGAGAAGCCAAAGGGCAATGCCAAGAAAGAGATGTCTTCCAACGATGGTGAAGGTAATCCCTTCAAATTCAAGAGACCTAAGCCTTGTTTCTTTTGTAAAGGGCCACATTGGACTAGGGATTGTCCAGTTAAGCAGAAACTGAAAACCCTAGTTAATGAGTCCCTTGAGACAAAAGCACAAATTGGGTCCATATACCAGATTGGGGCCATAGTCAAGGAAGTATCTTCAAAGAATGAAGGGAAAGAAACCAAAGAGGCCGAGACTAAACCCAAAAGCAAAAAGAGTGAATGGCTGAGGTTAGCCTCCCTTAAGAGTAACAAGGGAGACATGAACAAGTCTGAGGCATTGAAGGAAAGATTAGCCAAGCAATCAAAGGAAGGATGCATGAGGAGACACCGGCACTAG

Coding sequence (CDS)

ATGCTCACAGATTTCTTAGCGAAAAGGAAGAAGACCAAGGAAAATGAAGAGGAAACGTCAGAATCTGATGAAGATCGTGAAGAGAAGCCAAAGGGCAATGCCAAGAAAGAGATGTCTTCCAACGATGGTGAAGGTAATCCCTTCAAATTCAAGAGACCTAAGCCTTGTTTCTTTTGTAAAGGGCCACATTGGACTAGGGATTGTCCAGTTAAGCAGAAACTGAAAACCCTAGTTAATGAGTCCCTTGAGACAAAAGCACAAATTGGGTCCATATACCAGATTGGGGCCATAGTCAAGGAAGTATCTTCAAAGAATGAAGGGAAAGAAACCAAAGAGGCCGAGACTAAACCCAAAAGCAAAAAGAGTGAATGGCTGAGGTTAGCCTCCCTTAAGAGTAACAAGGGAGACATGAACAAGTCTGAGGCATTGAAGGAAAGATTAGCCAAGCAATCAAAGGAAGGATGCATGAGGAGACACCGGCACTAG

Protein sequence

MLTDFLAKRKKTKENEEETSESDEDREEKPKGNAKKEMSSNDGEGNPFKFKRPKPCFFCKGPHWTRDCPVKQKLKTLVNESLETKAQIGSIYQIGAIVKEVSSKNEGKETKEAETKPKSKKSEWLRLASLKSNKGDMNKSEALKERLAKQSKEGCMRRHRH

Homology

[Close]

BLAST of Bhi05G000380 vs. TrEMBL
Match: tr|A0A1S3B5C5|A0A1S3B5C5_CUCME (uncharacterized protein LOC103486198 OS=Cucumis melo OX=3656 GN=LOC103486198 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.1e-06
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 55  PCFFCKGPHWTRDCPVKQKLKTLVNESLETK-------AQIGSIYQIGAIVKEVSSKNEG 108
           PCF CKGPHWTRDCP ++ L  L+ +  E K        QIGS+ QIG + KE +++++G
Sbjct: 341 PCFICKGPHWTRDCPNQKALNALIAKFQEVKQVEDAPGPQIGSMQQIGVMKKETTAEHKG 400

[Close]

BLAST of Bhi05G000380 vs. TrEMBL
Match: tr|A0A1S3C1B3|A0A1S3C1B3_CUCME (uncharacterized protein LOC103495894 OS=Cucumis melo OX=3656 GN=LOC103495894 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.1e-06
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 55  PCFFCKGPHWTRDCPVKQKLKTLVNESLETK-------AQIGSIYQIGAIVKEVSSKNEG 108
           PCF CKGPHWTRDCP ++ L  LV +  E K        QIGS+ QIG + KE + +++G
Sbjct: 290 PCFICKGPHWTRDCPNRKALNALVAKFQEVKQVEDAPGPQIGSMQQIGVMKKETTVEHKG 349

[Close]

BLAST of Bhi05G000380 vs. TrEMBL
Match: tr|A0A1S3CE17|A0A1S3CE17_CUCME (uncharacterized protein LOC103499392 OS=Cucumis melo OX=3656 GN=LOC103499392 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.7e-05
Identity = 27/48 (56.25%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 55  PCFFCKGPHWTRDCPVKQKLKTLVNESLETK-------AQIGSIYQIG 96
           PCF CKGPHWTRDCP ++ L  LV +  E K        QIGSI QIG
Sbjct: 299 PCFICKGPHWTRDCPNRKALNALVAKFQEVKQVEDAPGPQIGSIQQIG 346

[Close]

BLAST of Bhi05G000380 vs. TrEMBL
Match: tr|A0A1S3BG92|A0A1S3BG92_CUCME (uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.6e-04
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 55  PCFFCKGPHWTRDCPVKQKLKTLVNESLETK-------AQIGSIYQIGAIVKEVSSKNEG 108
           P F CKGPHWTRDCP ++ L  LV +  E K        QIGS+ QI  + KE + +++G
Sbjct: 379 PYFICKGPHWTRDCPNRKALNALVTKFQEIKQVEDAPGPQIGSMQQIWLMKKETTVEHKG 438

[Close]

BLAST of Bhi05G000380 vs. NCBI nr
Match: XP_008442289.1 (PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 4.8e-06
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 55  PCFFCKGPHWTRDCPVKQKLKTLVNESLETK-------AQIGSIYQIGAIVKEVSSKNEG 108
           PCF CKGPHWTRDCP ++ L  L+ +  E K        QIGS+ QIG + KE +++++G
Sbjct: 341 PCFICKGPHWTRDCPNQKALNALIAKFQEVKQVEDAPGPQIGSMQQIGVMKKETTAEHKG 400

[Close]

BLAST of Bhi05G000380 vs. NCBI nr
Match: XP_008455798.1 (PREDICTED: uncharacterized protein LOC103495894 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 6.2e-06
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 55  PCFFCKGPHWTRDCPVKQKLKTLVNESLETK-------AQIGSIYQIGAIVKEVSSKNEG 108
           PCF CKGPHWTRDCP ++ L  LV +  E K        QIGS+ QIG + KE + +++G
Sbjct: 290 PCFICKGPHWTRDCPNRKALNALVAKFQEVKQVEDAPGPQIGSMQQIGVMKKETTVEHKG 349

[Close]

BLAST of Bhi05G000380 vs. NCBI nr
Match: XP_008460615.1 (PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo])

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 27/48 (56.25%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 55  PCFFCKGPHWTRDCPVKQKLKTLVNESLETK-------AQIGSIYQIG 96
           PCF CKGPHWTRDCP ++ L  LV +  E K        QIGSI QIG
Sbjct: 299 PCFICKGPHWTRDCPNRKALNALVAKFQEVKQVEDAPGPQIGSIQQIG 346

[Close]

BLAST of Bhi05G000380 vs. NCBI nr
Match: XP_008446938.1 (PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo])

HSP 1 Score: 53.1 bits (126), Expect = 9.9e-04
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 55  PCFFCKGPHWTRDCPVKQKLKTLVNESLETK-------AQIGSIYQIGAIVKEVSSKNEG 108
           P F CKGPHWTRDCP ++ L  LV +  E K        QIGS+ QI  + KE + +++G
Sbjct: 379 PYFICKGPHWTRDCPNRKALNALVTKFQEIKQVEDAPGPQIGSMQQIWLMKKETTVEHKG 438

The following BLAST results are available for this feature:

BLAST of Bhi05G000380 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi05G000380 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi05G000380 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B5C5\|A0A1S3B5C5_CUCME	3.1e-06	46.67	uncharacterized protein LOC103486198 OS=Cucumis melo OX=3656 GN=LOC103486198 PE=...	[more]
tr\|A0A1S3C1B3\|A0A1S3C1B3_CUCME	4.1e-06	48.33	uncharacterized protein LOC103495894 OS=Cucumis melo OX=3656 GN=LOC103495894 PE=...	[more]
tr\|A0A1S3CE17\|A0A1S3CE17_CUCME	7.7e-05	56.25	uncharacterized protein LOC103499392 OS=Cucumis melo OX=3656 GN=LOC103499392 PE=...	[more]
tr\|A0A1S3BG92\|A0A1S3BG92_CUCME	6.6e-04	45.00	uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=...	[more]

BLAST of Bhi05G000380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442289.1	4.8e-06	46.67	PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo]	[more]
XP_008455798.1	6.2e-06	48.33	PREDICTED: uncharacterized protein LOC103495894 [Cucumis melo]	[more]
XP_008460615.1	1.2e-04	56.25	PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo]	[more]
XP_008446938.1	9.9e-04	45.00	PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M000380	Bhi05M000380	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..161

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G000380	Cucumber (Gy14) v1	cgywgoB625
Bhi05G000380	Cucumber (Gy14) v1	cgywgoB626
Bhi05G000380	Cucumber (Gy14) v1	cgywgoB651
Bhi05G000380	Cucumber (Gy14) v2	cgybwgoB292
Bhi05G000380	Cucumber (Gy14) v2	cgybwgoB297
Bhi05G000380	Cucurbita maxima (Rimu)	cmawgoB0731
Bhi05G000380	Cucurbita moschata (Rifu)	cmowgoB0726
Bhi05G000380	Cucurbita moschata (Rifu)	cmowgoB0728
Bhi05G000380	Cucurbita pepo (Zucchini)	cpewgoB0930
Bhi05G000380	Cucurbita pepo (Zucchini)	cpewgoB0937
Bhi05G000380	Wild cucumber (PI 183967)	cpiwgoB305
Bhi05G000380	Wild cucumber (PI 183967)	cpiwgoB310
Bhi05G000380	Cucumber (Chinese Long) v3	cucwgoB307
Bhi05G000380	Cucumber (Chinese Long) v3	cucwgoB312
Bhi05G000380	Cucumber (Chinese Long) v3	cucwgoB315
Bhi05G000380	Cucumber (Chinese Long) v2	cuwgoB302
Bhi05G000380	Cucumber (Chinese Long) v2	cuwgoB307
Bhi05G000380	Bottle gourd (USVL1VR-Ls)	lsiwgoB460
Bhi05G000380	Melon (DHL92) v3.6.1	medwgoB403
Bhi05G000380	Melon (DHL92) v3.5.1	mewgoB402
Bhi05G000380	Watermelon (Charleston Gray)	wcgwgoB034
Bhi05G000380	Watermelon (Charleston Gray)	wcgwgoB043
Bhi05G000380	Watermelon (Charleston Gray)	wcgwgoB114
Bhi05G000380	Watermelon (97103) v2	wgowmbB239
Bhi05G000380	Watermelon (97103) v2	wgowmbB264
Bhi05G000380	Watermelon (97103) v2	wgowmbB272
Bhi05G000380	Watermelon (97103) v1	wgowmB242
Bhi05G000380	Watermelon (97103) v1	wgowmB256
Bhi05G000380	Watermelon (97103) v1	wgowmB263
Bhi05G000380	Silver-seed gourd	carwgoB0917
Bhi05G000380	Silver-seed gourd	carwgoB0918