Bhi05G000215 (gene) Wax gourd

Overview
NameBhi05G000215
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionDNA polymerase, beta-like region
Locationchr5 : 6240120 .. 6240947 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGCAGACTTATTTCTGGGCCTTTTCAGTACAATAATAAATACAATTATTGCTTACAATTTTTTTTCCTTTTTTCTTTTTTTCTTTTTTTTAATTATCAGTACCAAATCAGCAATTAAGCAATAAGCCAATAACACAATTAGAGAGAACATAATGGAAAGGTAAAATTCTCAATTTAAGAAGACGATGAACAATGAAACAACATTGCAAGAAGAACTAAGCACCAGCAGAACCGGAAATAAACTCAATAATAGCACCTGCCGCTAAATTTTGAACCAGAGCAAACATTCCACCCCCAAATATTGATCCCCAAATCGGCGGCGACGGTAGATGTCCACCATAATTAGCTCCAGGAGCATAACTAAAATTATGATTCGGAAATCCCCAAGGAGCCGGAACGCCGCCGTAAGAAAAATGGCCACCATCATAACCATTTGGATTCACATGATAACCATTAGGTTTATGAGCCGCCGCCCACGGCGGCGCGTGCGCGTGAAGTATCCTGCGAGATTTCGTCGGCGAACCGTATGGCTTAAGGAGGCATTTGGGATGGATATTGACTCCACAAACATTGAAGCTGTAGACCCAGAGAGAAGAACAATCAATTTCGCAAACAGAGCATTGCCCAGAGGAGAGATTGCGGAGGGTCAGCTTATTGTGGTCGTCGATGACGTGGCGGACCTGCTCAGGGAATTGAGTGCAAAGTGGGTGGACATCGAAGTGCAGTGGATGTGTTAGAGATATTGCCATCAAAGATAGGTCAAAGAAGCCACACCAGTTGGAGACCACCACATCACATACGAGAGTCATGATGAGCAATAAAGATCAG

mRNA sequence

TGGCAGACTTATTTCTGGGCCTTTTCAGTACAATAATAAATACAATTATTGCTTACAATTTTTTTTCCTTTTTTCTTTTTTTCTTTTTTTTAATTATCAGTACCAAATCAGCAATTAAGCAATAAGCCAATAACACAATTAGAGAGAACATAATGGAAAGGTAAAATTCTCAATTTAAGAAGACGATGAACAATGAAACAACATTGCAAGAAGAACTAAGCACCAGCAGAACCGGAAATAAACTCAATAATAGCACCTGCCGCTAAATTTTGAACCAGAGCAAACATTCCACCCCCAAATATTGATCCCCAAATCGGCGGCGACGGTAGATGTCCACCATAATTAGCTCCAGGAGCATAACTAAAATTATGATTCGGAAATCCCCAAGGAGCCGGAACGCCGCCGTAAGAAAAATGGCCACCATCATAACCATTTGGATTCACATGATAACCATTAGGTTTATGAGCCGCCGCCCACGGCGGCGCGTGCGCGTGAAGTATCCTGCGAGATTTCGTCGGCGAACCGTATGGCTTAAGGAGGCATTTGGGATGGATATTGACTCCACAAACATTGAAGCTGTAGACCCAGAGAGAAGAACAATCAATTTCGCAAACAGAGCATTGCCCAGAGGAGAGATTGCGGAGGGTCAGCTTATTGTGGTCGTCGATGACGTGGCGGACCTGCTCAGGGAATTGAGTGCAAAGTGGGTGGACATCGAAGTGCAGTGGATGTGTTAGAGATATTGCCATCAAAGATAGGTCAAAGAAGCCACACCAGTTGGAGACCACCACATCACATACGAGAGTCATGATGAGCAATAAAGATCAG

Coding sequence (CDS)

ATGTCCACCATAATTAGCTCCAGGAGCATAACTAAAATTATGATTCGGAAATCCCCAAGGAGCCGGAACGCCGCCGTAAGAAAAATGGCCACCATCATAACCATTTGGATTCACATGATAACCATTAGGTTTATGAGCCGCCGCCCACGGCGGCGCGTGCGCGTGAAGTATCCTGCGAGATTTCGTCGGCGAACCGTATGGCTTAAGGAGGCATTTGGGATGGATATTGACTCCACAAACATTGAAGCTGTAGACCCAGAGAGAAGAACAATCAATTTCGCAAACAGAGCATTGCCCAGAGGAGAGATTGCGGAGGGTCAGCTTATTGTGGTCGTCGATGACGTGGCGGACCTGCTCAGGGAATTGAGTGCAAAGTGGGTGGACATCGAAGTGCAGTGGATGTGTTAG

Protein sequence

MSTIISSRSITKIMIRKSPRSRNAAVRKMATIITIWIHMITIRFMSRRPRRRVRVKYPARFRRRTVWLKEAFGMDIDSTNIEAVDPERRTINFANRALPRGEIAEGQLIVVVDDVADLLRELSAKWVDIEVQWMC
Homology
[Close]
BLAST of Bhi05G000215 vs. TrEMBL
Match: tr|A0A0A0KXM9|A0A0A0KXM9_CUCSA (DNA polymerase, beta-like region OS=Cucumis sativus OX=3659 GN=Csa_4G297430 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.9e-27
Identity = 71/122 (58.20%), Postives = 89/122 (72.95%), Query Frame = 0 

Query: 10  ITKIMIRKSPRSRNAAVRKMATIITIWIHMITIRFMSRRPRRRVRVKYPARFRRRTVWLK 69
           IT +MIR SP    +AVRK+ T        IT+R  SR P RR+ ++YP   RRRTV L+
Sbjct: 3   ITNMMIRISPIRLTSAVRKITT-------TITMRMGSRGPLRRLAIRYPTGSRRRTVRLE 62

Query: 70  EAFGMDIDSTNIEAVDPERRTINFANRALPRGEIAEGQLIVVVDDVADLLRELSAKWVDI 129
            AFGM+IDSTN+ A++PERRTI FANRA  RGE+AEG+ +  VD+VA+LLREL AKW+DI
Sbjct: 63  NAFGMNIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDI 117

Query: 130 EV 132
           EV
Sbjct: 123 EV 117

[Close]
BLAST of Bhi05G000215 vs. NCBI nr
Match: KGN54293.1 (DNA polymerase, beta-like region [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 1.2e-26
Identity = 71/122 (58.20%), Postives = 89/122 (72.95%), Query Frame = 0 

Query: 10  ITKIMIRKSPRSRNAAVRKMATIITIWIHMITIRFMSRRPRRRVRVKYPARFRRRTVWLK 69
           IT +MIR SP    +AVRK+ T        IT+R  SR P RR+ ++YP   RRRTV L+
Sbjct: 3   ITNMMIRISPIRLTSAVRKITT-------TITMRMGSRGPLRRLAIRYPTGSRRRTVRLE 62

Query: 70  EAFGMDIDSTNIEAVDPERRTINFANRALPRGEIAEGQLIVVVDDVADLLRELSAKWVDI 129
            AFGM+IDSTN+ A++PERRTI FANRA  RGE+AEG+ +  VD+VA+LLREL AKW+DI
Sbjct: 63  NAFGMNIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDI 117

Query: 130 EV 132
           EV
Sbjct: 123 EV 117

The following BLAST results are available for this feature:
BLAST of Bhi05G000215 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi05G000215 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi05G000215 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KXM9|A0A0A0KXM9_CUCSA7.9e-2758.20DNA polymerase, beta-like region OS=Cucumis sativus OX=3659 GN=Csa_4G297430 PE=4... [more]
BLAST of Bhi05G000215 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54293.11.2e-2658.20DNA polymerase, beta-like region [Cucumis sativus][more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi05M000215Bhi05M000215mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi05G000215Wax gourdwgowgoB057
Bhi05G000215Wax gourdwgowgoB077
Bhi05G000215Cucumber (Gy14) v1cgywgoB347
Bhi05G000215Cucumber (Gy14) v1cgywgoB529
Bhi05G000215Cucumber (Gy14) v1cgywgoB776
Bhi05G000215Cucumber (Gy14) v2cgybwgoB143
Bhi05G000215Cucumber (Gy14) v2cgybwgoB293
Bhi05G000215Cucurbita maxima (Rimu)cmawgoB0344
Bhi05G000215Cucurbita maxima (Rimu)cmawgoB0480
Bhi05G000215Cucurbita maxima (Rimu)cmawgoB0482
Bhi05G000215Cucurbita maxima (Rimu)cmawgoB0645
Bhi05G000215Cucurbita maxima (Rimu)cmawgoB0730
Bhi05G000215Cucurbita maxima (Rimu)cmawgoB1026
Bhi05G000215Cucurbita maxima (Rimu)cmawgoB1113
Bhi05G000215Cucurbita moschata (Rifu)cmowgoB0333
Bhi05G000215Cucurbita moschata (Rifu)cmowgoB0480
Bhi05G000215Cucurbita moschata (Rifu)cmowgoB0482
Bhi05G000215Cucurbita moschata (Rifu)cmowgoB0646
Bhi05G000215Cucurbita moschata (Rifu)cmowgoB0725
Bhi05G000215Cucurbita moschata (Rifu)cmowgoB1019
Bhi05G000215Cucurbita moschata (Rifu)cmowgoB1112
Bhi05G000215Cucurbita pepo (Zucchini)cpewgoB0195
Bhi05G000215Cucurbita pepo (Zucchini)cpewgoB0197
Bhi05G000215Cucurbita pepo (Zucchini)cpewgoB0405
Bhi05G000215Cucurbita pepo (Zucchini)cpewgoB0321
Bhi05G000215Cucurbita pepo (Zucchini)cpewgoB0800
Bhi05G000215Cucurbita pepo (Zucchini)cpewgoB0936
Bhi05G000215Cucurbita pepo (Zucchini)cpewgoB1120
Bhi05G000215Wild cucumber (PI 183967)cpiwgoB148
Bhi05G000215Wild cucumber (PI 183967)cpiwgoB306
Bhi05G000215Cucumber (Chinese Long) v3cucwgoB156
Bhi05G000215Cucumber (Chinese Long) v3cucwgoB308
Bhi05G000215Cucumber (Chinese Long) v2cuwgoB149
Bhi05G000215Cucumber (Chinese Long) v2cuwgoB303
Bhi05G000215Bottle gourd (USVL1VR-Ls)lsiwgoB050
Bhi05G000215Bottle gourd (USVL1VR-Ls)lsiwgoB224
Bhi05G000215Bottle gourd (USVL1VR-Ls)lsiwgoB459
Bhi05G000215Bottle gourd (USVL1VR-Ls)lsiwgoB463
Bhi05G000215Melon (DHL92) v3.6.1medwgoB477
Bhi05G000215Melon (DHL92) v3.6.1medwgoB557
Bhi05G000215Melon (DHL92) v3.5.1mewgoB475
Bhi05G000215Melon (DHL92) v3.5.1mewgoB552
Bhi05G000215Watermelon (Charleston Gray)wcgwgoB049
Bhi05G000215Watermelon (Charleston Gray)wcgwgoB447
Bhi05G000215Watermelon (Charleston Gray)wcgwgoB526
Bhi05G000215Watermelon (Charleston Gray)wcgwgoB585
Bhi05G000215Watermelon (97103) v2wgowmbB257
Bhi05G000215Watermelon (97103) v2wgowmbB259
Bhi05G000215Watermelon (97103) v2wgowmbB261
Bhi05G000215Watermelon (97103) v2wgowmbB278
Bhi05G000215Watermelon (97103) v1wgowmB260
Bhi05G000215Watermelon (97103) v1wgowmB265
Bhi05G000215Watermelon (97103) v1wgowmB270
Bhi05G000215Watermelon (97103) v1wgowmB288
Bhi05G000215Silver-seed gourdcarwgoB0130
Bhi05G000215Silver-seed gourdcarwgoB0286
Bhi05G000215Silver-seed gourdcarwgoB0887
Bhi05G000215Silver-seed gourdcarwgoB0916
Bhi05G000215Silver-seed gourdcarwgoB0989
Bhi05G000215Silver-seed gourdcarwgoB1124