Bhi04G001699 (gene) Wax gourd

Overview
NameBhi04G001699
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionMyb transcription factor
Locationchr4 : 57742760 .. 57742951 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGAACCTCGACTCTATGGCCGGGGTTGTAGGAGACCATACGAAGTCGTGCCCTCGGGGACATTGGCGTCCGGCCGAGGACGAGAAGCTCCAACGATTAGTTCAGCAACACGGCGCGCAAAACTGGAATTTCATTGCAGATAAACTACAAGGAAGATCAGGCATGTCTCTTTTTTGTAATAATGTTTGA

mRNA sequence

ATGCCGAACCTCGACTCTATGGCCGGGGTTGTAGGAGACCATACGAAGTCGTGCCCTCGGGGACATTGGCGTCCGGCCGAGGACGAGAAGCTCCAACGATTAGTTCAGCAACACGGCGCGCAAAACTGGAATTTCATTGCAGATAAACTACAAGGAAGATCAGGCATGTCTCTTTTTTGTAATAATGTTTGA

Coding sequence (CDS)

ATGCCGAACCTCGACTCTATGGCCGGGGTTGTAGGAGACCATACGAAGTCGTGCCCTCGGGGACATTGGCGTCCGGCCGAGGACGAGAAGCTCCAACGATTAGTTCAGCAACACGGCGCGCAAAACTGGAATTTCATTGCAGATAAACTACAAGGAAGATCAGGCATGTCTCTTTTTTGTAATAATGTTTGA

Protein sequence

MPNLDSMAGVVGDHTKSCPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMSLFCNNV
Homology
[Close]
BLAST of Bhi04G001699 vs. Swiss-Prot
Match: sp|Q5NBM8|CSA_ORYSJ (Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-11
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 16 KSCPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
          K C RGHWRPAED KL+ LV Q+G QNWN IA+KL GRSG S
Sbjct: 45 KLCARGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLDGRSGKS 86

[Close]
BLAST of Bhi04G001699 vs. Swiss-Prot
Match: sp|Q6R053|MYB56_ARATH (Transcription factor MYB56 OS=Arabidopsis thaliana OX=3702 GN=MYB56 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-11
Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 0 

Query: 7   MAGVVGDHTKSCPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
           M G  G +TK C RGHWRP ED KL+ LV Q G QNWN I++ L GRSG S
Sbjct: 80  MRGKSGINTKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKS 130

[Close]
BLAST of Bhi04G001699 vs. Swiss-Prot
Match: sp|Q6R0C4|MYB52_ARATH (Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-10
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 18 CPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
          C RGHWRPAEDEKL+ LV+Q G  NWN IA KL GRSG S
Sbjct: 3  CSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKS 42

[Close]
BLAST of Bhi04G001699 vs. Swiss-Prot
Match: sp|Q9FX36|MYB54_ARATH (Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.2e-10
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 18 CPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
          C RGHWRPAEDEKL+ LV+Q+G  NWN IA KL GRSG S
Sbjct: 4  CSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKS 43

[Close]
BLAST of Bhi04G001699 vs. Swiss-Prot
Match: sp|Q9SEZ4|MY105_ARATH (Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.2e-10
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 0 

Query: 17  SCPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
           S  RGHWRPAED KL+ LV  +G QNWN IA+KLQGRSG S
Sbjct: 104 SVSRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKS 144

[Close]
BLAST of Bhi04G001699 vs. TAIR10
Match: AT5G17800.1 (myb domain protein 56)

HSP 1 Score: 68.2 bits (165), Expect = 2.1e-12
Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 0 

Query: 7   MAGVVGDHTKSCPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
           M G  G +TK C RGHWRP ED KL+ LV Q G QNWN I++ L GRSG S
Sbjct: 80  MRGKSGINTKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKS 130

[Close]
BLAST of Bhi04G001699 vs. TAIR10
Match: AT1G17950.1 (myb domain protein 52)

HSP 1 Score: 66.6 bits (161), Expect = 6.1e-12
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 18 CPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
          C RGHWRPAEDEKL+ LV+Q G  NWN IA KL GRSG S
Sbjct: 3  CSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKS 42

[Close]
BLAST of Bhi04G001699 vs. TAIR10
Match: AT4G33450.1 (myb domain protein 69)

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-11
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 17 SCPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
          SC RGHWRP ED+ L++LV+Q+G +NWNFIA  L GRSG S
Sbjct: 16 SCQRGHWRPVEDDNLRQLVEQYGPKNWNFIAQHLYGRSGKS 56

[Close]
BLAST of Bhi04G001699 vs. TAIR10
Match: AT1G73410.1 (myb domain protein 54)

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-11
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 18 CPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
          C RGHWRPAEDEKL+ LV+Q+G  NWN IA KL GRSG S
Sbjct: 4  CSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKS 43

[Close]
BLAST of Bhi04G001699 vs. TAIR10
Match: AT1G69560.1 (myb domain protein 105)

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-11
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 0 

Query: 17  SCPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
           S  RGHWRPAED KL+ LV  +G QNWN IA+KLQGRSG S
Sbjct: 104 SVSRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKS 144

[Close]
BLAST of Bhi04G001699 vs. TrEMBL
Match: tr|A0A0A0LIG5|A0A0A0LIG5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G229950 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-19
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0 

Query: 7  MAGVVGDHTKSCPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMSLF 60
          MAGV GD  KSCPRGHWRPAEDEKL++LVQQHG QNWNF+A+KLQGRSG+SLF
Sbjct: 1  MAGVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGISLF 53

[Close]
BLAST of Bhi04G001699 vs. TrEMBL
Match: tr|A0A1Q3DDL6|A0A1Q3DDL6_CEPFO (Myb_DNA-bind_6 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_33934 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-15
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 5  DSMAGVVGDHTKSCPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
          DS AG   D TK+CPRGHWRPAEDEKL++LV+Q+GAQNWN IA+KLQGRSG S
Sbjct: 3  DSGAGSSDDATKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKS 55

[Close]
BLAST of Bhi04G001699 vs. TrEMBL
Match: tr|K7KUM6|K7KUM6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100802283 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.0e-14
Identity = 36/46 (78.26%), Postives = 43/46 (93.48%), Query Frame = 0 

Query: 12 GDHTKSCPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
          G+ TK+CPRGHWRPAEDEKL++LV+Q+GAQNWN IA+KLQGRSG S
Sbjct: 7  GEDTKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKS 52

[Close]
BLAST of Bhi04G001699 vs. TrEMBL
Match: tr|V4TD41|V4TD41_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10001803mg PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.0e-14
Identity = 41/57 (71.93%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 5  DSMAGVVGDHTKS----CPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
          DS AG   D TKS    CPRGHWRPAEDEKL++LV+Q+GAQNWN IA+KLQGRSG S
Sbjct: 3  DSGAGSSDDATKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKS 59

[Close]
BLAST of Bhi04G001699 vs. TrEMBL
Match: tr|A0A2H5PI50|A0A2H5PI50_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_138790 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.0e-14
Identity = 41/57 (71.93%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 5  DSMAGVVGDHTKS----CPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
          DS AG   D TKS    CPRGHWRPAEDEKL++LV+Q+GAQNWN IA+KLQGRSG S
Sbjct: 3  DSGAGSSDDATKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKS 59

[Close]
BLAST of Bhi04G001699 vs. NCBI nr
Match: KGN61710.1 (hypothetical protein Csa_2G229950 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 4.3e-19
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0 

Query: 7  MAGVVGDHTKSCPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMSLF 60
          MAGV GD  KSCPRGHWRPAEDEKL++LVQQHG QNWNF+A+KLQGRSG+SLF
Sbjct: 1  MAGVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGISLF 53

[Close]
BLAST of Bhi04G001699 vs. NCBI nr
Match: XP_022975017.1 (transcription factor CSA-like [Cucurbita maxima])

HSP 1 Score: 93.2 bits (230), Expect = 3.4e-16
Identity = 42/57 (73.68%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 1  MPNLDSMAGVVGDHTKSCPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
          M  L   A   GD TKSCPRGHWRP EDEKL+RLV+Q+GAQNWNFIA+KLQGRSG S
Sbjct: 1  MDGLLVSASTFGDDTKSCPRGHWRPTEDEKLRRLVKQYGAQNWNFIAEKLQGRSGKS 57

[Close]
BLAST of Bhi04G001699 vs. NCBI nr
Match: XP_022936691.1 (transcription factor MYB117-like [Cucurbita moschata])

HSP 1 Score: 92.8 bits (229), Expect = 4.4e-16
Identity = 42/57 (73.68%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 1  MPNLDSMAGVVGDHTKSCPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
          M  L   A   GD TKSCPRGHWRP EDEKL+RLV+Q+GAQNWNFIA+KLQGRSG S
Sbjct: 1  MDGLLVSASTSGDDTKSCPRGHWRPTEDEKLRRLVKQYGAQNWNFIAEKLQGRSGKS 57

[Close]
BLAST of Bhi04G001699 vs. NCBI nr
Match: XP_023535350.1 (transcription factor MYB105-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.7 bits (221), Expect = 3.7e-15
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 1  MPNLDSMAGVVGDHTKSCPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
          M  L   A   GD TKSC RGHWRP EDEKL+RLV+Q+GAQNWNFIA+KLQGRSG S
Sbjct: 1  MDGLLVSASTSGDDTKSCSRGHWRPTEDEKLRRLVKQYGAQNWNFIAEKLQGRSGKS 57

[Close]
BLAST of Bhi04G001699 vs. NCBI nr
Match: GAV90525.1 (Myb_DNA-bind_6 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 89.4 bits (220), Expect = 4.9e-15
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 5  DSMAGVVGDHTKSCPRGHWRPAEDEKLQRLVQQHGAQNWNFIADKLQGRSGMS 58
          DS AG   D TK+CPRGHWRPAEDEKL++LV+Q+GAQNWN IA+KLQGRSG S
Sbjct: 3  DSGAGSSDDATKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKS 55

The following BLAST results are available for this feature:
BLAST of Bhi04G001699 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q5NBM8|CSA_ORYSJ3.8e-1171.43Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV... [more]
sp|Q6R053|MYB56_ARATH3.8e-1160.78Transcription factor MYB56 OS=Arabidopsis thaliana OX=3702 GN=MYB56 PE=1 SV=1[more]
sp|Q6R0C4|MYB52_ARATH1.1e-1072.50Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1[more]
sp|Q9FX36|MYB54_ARATH3.2e-1072.50Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=2 SV=1[more]
sp|Q9SEZ4|MY105_ARATH4.2e-1070.73Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1[more]
BLAST of Bhi04G001699 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G17800.12.1e-1260.78myb domain protein 56[more]
AT1G17950.16.1e-1272.50myb domain protein 52[more]
AT4G33450.11.0e-1165.85myb domain protein 69[more]
AT1G73410.11.8e-1172.50myb domain protein 54[more]
AT1G69560.12.3e-1170.73myb domain protein 105[more]
BLAST of Bhi04G001699 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LIG5|A0A0A0LIG5_CUCSA2.8e-1983.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G229950 PE=4 SV=1[more]
tr|A0A1Q3DDL6|A0A1Q3DDL6_CEPFO3.2e-1575.47Myb_DNA-bind_6 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=C... [more]
tr|K7KUM6|K7KUM6_SOYBN8.0e-1478.26Uncharacterized protein OS=Glycine max OX=3847 GN=100802283 PE=4 SV=1[more]
tr|V4TD41|V4TD41_9ROSI8.0e-1471.93Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10001803mg PE=4 ... [more]
tr|A0A2H5PI50|A0A2H5PI50_CITUN8.0e-1471.93Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_138790 PE=4 SV=1[more]
BLAST of Bhi04G001699 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61710.14.3e-1983.02hypothetical protein Csa_2G229950 [Cucumis sativus][more]
XP_022975017.13.4e-1673.68transcription factor CSA-like [Cucurbita maxima][more]
XP_022936691.14.4e-1673.68transcription factor MYB117-like [Cucurbita moschata][more]
XP_023535350.13.7e-1571.93transcription factor MYB105-like [Cucurbita pepo subsp. pepo][more]
GAV90525.14.9e-1575.47Myb_DNA-bind_6 domain-containing protein [Cephalotus follicularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
IPR017930Myb_dom
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M001699Bhi04M001699mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.10.10.60coord: 12..61
e-value: 1.0E-12
score: 49.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 10..57
NoneNo IPR availablePANTHERPTHR10641:SF697SUBFAMILY NOT NAMEDcoord: 10..57
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 20..55
e-value: 1.2E-10
score: 41.2
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 23..58
e-value: 1.67421E-9
score: 47.185
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 15..63
score: 12.334
IPR009057Homeobox-like domain superfamilySUPERFAMILYSSF46689Homeodomain-likecoord: 15..58

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi04G001699Cucurbita maxima (Rimu)cmawgoB0018
Bhi04G001699Cucurbita maxima (Rimu)cmawgoB0573
Bhi04G001699Cucurbita moschata (Rifu)cmowgoB0010
Bhi04G001699Cucurbita moschata (Rifu)cmowgoB0567
Bhi04G001699Cucurbita pepo (Zucchini)cpewgoB0687
Bhi04G001699Cucurbita pepo (Zucchini)cpewgoB0983
Bhi04G001699Bottle gourd (USVL1VR-Ls)lsiwgoB604
Bhi04G001699Melon (DHL92) v3.6.1medwgoB348
Bhi04G001699Melon (DHL92) v3.5.1mewgoB350
Bhi04G001699Watermelon (Charleston Gray)wcgwgoB636
Bhi04G001699Watermelon (97103) v2wgowmbB332
Bhi04G001699Silver-seed gourdcarwgoB0718
Bhi04G001699Silver-seed gourdcarwgoB0746