Bhi04G001686 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04G001686
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	ATP synthase subunit c, chloroplastic
Location	chr4 : 57367493 .. 57367789 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTAGCCATAAGCTATGGCAGCTCCAGCTCGCAACCACAGGGGCTCAGCGGTCAGGTCCCCCCCATTCGAATTACGTTAGGAGGTCTTTCGCTTTTGCCAGATCTAGAGAGATACTACGAGTCCTCCGTCCCAGATTCCATCGCCGCGGCCATCTGGTTCACCGGTACTACCAAAAAGTCTCATGCTTACGTTACTGTTATTGATGGTTTGATTATCTTGGACCCCGGTCGTGCTTCTGGTTTCCATTCCCATCATCATATTGATGATAAATCCCCTCGTGCTCCGCCATAA

mRNA sequence

ATGGCTCTAGCCATAAGCTATGGCAGCTCCAGCTCGCAACCACAGGGGCTCAGCGGTCAGGTCCCCCCCATTCGAATTACGTTAGGAGGTCTTTCGCTTTTGCCAGATCTAGAGAGATACTACGAGTCCTCCGTCCCAGATTCCATCGCCGCGGCCATCTGGTTCACCGGTACTACCAAAAAGTCTCATGCTTACGTTACTGTTATTGATGGTTTGATTATCTTGGACCCCGGTCGTGCTTCTGGTTTCCATTCCCATCATCATATTGATGATAAATCCCCTCGTGCTCCGCCATAA

Coding sequence (CDS)

ATGGCTCTAGCCATAAGCTATGGCAGCTCCAGCTCGCAACCACAGGGGCTCAGCGGTCAGGTCCCCCCCATTCGAATTACGTTAGGAGGTCTTTCGCTTTTGCCAGATCTAGAGAGATACTACGAGTCCTCCGTCCCAGATTCCATCGCCGCGGCCATCTGGTTCACCGGTACTACCAAAAAGTCTCATGCTTACGTTACTGTTATTGATGGTTTGATTATCTTGGACCCCGGTCGTGCTTCTGGTTTCCATTCCCATCATCATATTGATGATAAATCCCCTCGTGCTCCGCCATAA

Protein sequence

MALAISYGSSSSQPQGLSGQVPPIRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDGLIILDPGRASGFHSHHHIDDKSPRAPP

Homology

[Close]

BLAST of Bhi04G001686 vs. TrEMBL
Match: tr|U7DY90|U7DY90_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_0248s00200g PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-32
Identity = 72/79 (91.14%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 23  PIRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDGLIIL---DPGR 82
           PIRITLGGLSLLPDLERYYESSV DSIAAA+WFT TTKKSHAYVTVIDGLIIL   DPGR
Sbjct: 25  PIRITLGGLSLLPDLERYYESSVSDSIAAAVWFTSTTKKSHAYVTVIDGLIILDHEDPGR 84

Query: 83  ASGFHSHHHIDDKSPRAPP 99
           ASGFHSHHHID KSPRAPP
Sbjct: 85  ASGFHSHHHIDGKSPRAPP 103

[Close]

BLAST of Bhi04G001686 vs. TrEMBL
Match: tr|A0A2P5QY96|A0A2P5QY96_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD23548 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.5e-32
Identity = 72/78 (92.31%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 24  IRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDGLIILD---PGRA 83
           IRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDG II D   PGRA
Sbjct: 42  IRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDGFIIFDYEGPGRA 101

Query: 84  SGFHSHHHIDDKSPRAPP 99
           SGFHSHHHIDDKSPRA P
Sbjct: 102 SGFHSHHHIDDKSPRALP 119

[Close]

BLAST of Bhi04G001686 vs. TrEMBL
Match: tr|A0A067LCB0|A0A067LCB0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13493 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.9e-31
Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 23  PIRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDGLIIL---DPGR 82
           PIRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTV DGLIIL   DPGR
Sbjct: 199 PIRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVTDGLIILDYEDPGR 258

Query: 83  ASGFHSHHHIDDKS 94
           ASGFHSHHHIDDKS
Sbjct: 259 ASGFHSHHHIDDKS 272

[Close]

BLAST of Bhi04G001686 vs. TrEMBL
Match: tr|B9T8W5|B9T8W5_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2007240 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.8e-31
Identity = 73/79 (92.41%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 23  PIRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDGLIIL---DPGR 82
           PIRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTV DGLIIL   DPGR
Sbjct: 184 PIRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVTDGLIILDHEDPGR 243

Query: 83  ASGFHSHHHIDDKSPRAPP 99
           ASGFHS HHIDDKSPRA P
Sbjct: 244 ASGFHS-HHIDDKSPRALP 261

[Close]

BLAST of Bhi04G001686 vs. TrEMBL
Match: tr|A0A0D2PTC4|A0A0D2PTC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G166600 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.5e-31
Identity = 72/82 (87.80%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 24  IRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDGLIILD---PGRA 83
           IRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDG II D   PGRA
Sbjct: 101 IRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDGFIIFDYEGPGRA 160

Query: 84  SGFHSHHHIDDKSPR----APP 99
           SGFHSHHHIDDKSP     APP
Sbjct: 161 SGFHSHHHIDDKSPLQRTVAPP 182

[Close]

BLAST of Bhi04G001686 vs. NCBI nr
Match: PNS22340.1 (hypothetical protein POPTR_T152800v3 [Populus trichocarpa])

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 72/79 (91.14%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 23  PIRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDGLIIL---DPGR 82
           PIRITLGGLSLLPDLERYYESSV DSIAAA+WFT TTKKSHAYVTVIDGLIIL   DPGR
Sbjct: 25  PIRITLGGLSLLPDLERYYESSVSDSIAAAVWFTSTTKKSHAYVTVIDGLIILDHEDPGR 84

Query: 83  ASGFHSHHHIDDKSPRAPP 99
           ASGFHSHHHID KSPRAPP
Sbjct: 85  ASGFHSHHHIDGKSPRAPP 103

[Close]

BLAST of Bhi04G001686 vs. NCBI nr
Match: PPD79523.1 (hypothetical protein GOBAR_DD23548 [Gossypium barbadense])

HSP 1 Score: 146.4 bits (368), Expect = 5.2e-32
Identity = 72/78 (92.31%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 24  IRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDGLIILD---PGRA 83
           IRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDG II D   PGRA
Sbjct: 42  IRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDGFIIFDYEGPGRA 101

Query: 84  SGFHSHHHIDDKSPRAPP 99
           SGFHSHHHIDDKSPRA P
Sbjct: 102 SGFHSHHHIDDKSPRALP 119

[Close]

BLAST of Bhi04G001686 vs. NCBI nr
Match: KDP46047.1 (hypothetical protein JCGZ_13493 [Jatropha curcas])

HSP 1 Score: 143.3 bits (360), Expect = 4.4e-31
Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 23  PIRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDGLIIL---DPGR 82
           PIRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTV DGLIIL   DPGR
Sbjct: 199 PIRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVTDGLIILDYEDPGR 258

Query: 83  ASGFHSHHHIDDKS 94
           ASGFHSHHHIDDKS
Sbjct: 259 ASGFHSHHHIDDKS 272

[Close]

BLAST of Bhi04G001686 vs. NCBI nr
Match: EEF27698.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 142.9 bits (359), Expect = 5.8e-31
Identity = 73/79 (92.41%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 23  PIRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDGLIIL---DPGR 82
           PIRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTV DGLIIL   DPGR
Sbjct: 184 PIRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVTDGLIILDHEDPGR 243

Query: 83  ASGFHSHHHIDDKSPRAPP 99
           ASGFHS HHIDDKSPRA P
Sbjct: 244 ASGFHS-HHIDDKSPRALP 261

[Close]

BLAST of Bhi04G001686 vs. NCBI nr
Match: KJB07321.1 (hypothetical protein B456_001G166600 [Gossypium raimondii])

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-30
Identity = 72/82 (87.80%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 24  IRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDGLIILD---PGRA 83
           IRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDG II D   PGRA
Sbjct: 101 IRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDGFIIFDYEGPGRA 160

Query: 84  SGFHSHHHIDDKSPR----APP 99
           SGFHSHHHIDDKSP     APP
Sbjct: 161 SGFHSHHHIDDKSPLQRTVAPP 182

The following BLAST results are available for this feature:

BLAST of Bhi04G001686 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi04G001686 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi04G001686 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|U7DY90\|U7DY90_POPTR	1.6e-32	91.14	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_0248s00200g PE=4...	[more]
tr\|A0A2P5QY96\|A0A2P5QY96_GOSBA	3.5e-32	92.31	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD23548 PE=4 SV...	[more]
tr\|A0A067LCB0\|A0A067LCB0_JATCU	2.9e-31	94.59	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13493 PE=4 SV=1	[more]
tr\|B9T8W5\|B9T8W5_RICCO	3.8e-31	92.41	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2007240 PE=4 SV=1	[more]
tr\|A0A0D2PTC4\|A0A0D2PTC4_GOSRA	8.5e-31	87.80	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G166600 PE=4 ...	[more]

BLAST of Bhi04G001686 vs. NCBI nr


Match Name	E-value	Identity	Description
PNS22340.1	2.3e-32	91.14	hypothetical protein POPTR_T152800v3 [Populus trichocarpa]	[more]
PPD79523.1	5.2e-32	92.31	hypothetical protein GOBAR_DD23548 [Gossypium barbadense]	[more]
KDP46047.1	4.4e-31	94.59	hypothetical protein JCGZ_13493 [Jatropha curcas]	[more]
EEF27698.1	5.8e-31	92.41	conserved hypothetical protein [Ricinus communis]	[more]
KJB07321.1	1.3e-30	87.80	hypothetical protein B456_001G166600 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0006260	DNA replication
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0015078	hydrogen ion transmembrane transporter activity
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M001686	Bhi04M001686	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi04G001686	Cucurbita maxima (Rimu)	cmawgoB0573
Bhi04G001686	Cucurbita moschata (Rifu)	cmowgoB0567
Bhi04G001686	Cucurbita pepo (Zucchini)	cpewgoB0687
Bhi04G001686	Bottle gourd (USVL1VR-Ls)	lsiwgoB604
Bhi04G001686	Watermelon (Charleston Gray)	wcgwgoB636
Bhi04G001686	Watermelon (97103) v2	wgowmbB332
Bhi04G001686	Silver-seed gourd	carwgoB0746