Bhi04G001677 (gene) Wax gourd

Overview
NameBhi04G001677
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr4 : 56868218 .. 56868736 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTGGATTTGGATAAGCAAAAGATTGGAACAACCATTGGTAAGAAATCAAGAAGACCTCGTACTGCAACACAAACATTTGAACGACGACAATCAGATTGCACCTTGGTGAAAACATCATGGAGATTTGCAAAGTCATTCAGTATGGACTTAACTCAACTGGGTAGCTTGGATGAGGAGGCCGAGGAAAAGGATCCTCATTCAACAAAGAACATAAGAAGAAATATTATAGATGATGCAGATAATGTCGTCAAGTCTGGTATAAAGAGAGAGGTTAGGGAAACATCTCCTTTTTCTAACCCATTTGACCACAACAATAGGGATTCTTCACCTGTTACTACTCTAGTTCCATCCCTAAATGTCAATGAAATTGTTCATCCCCAACCTAAAAGGCCACAAATTGACCCATTAGATTCCTTGCTGCTCATACTAGATCAGCAGTTCGTAAATTACCTACTGAAGAGGTTCAAAATCGATTGGAGGAAAATGTTGTTGAAGTTCATACAAAGGAATTAG

mRNA sequence

ATGTCTTTGGATTTGGATAAGCAAAAGATTGGAACAACCATTGGTAAGAAATCAAGAAGACCTCGTACTGCAACACAAACATTTGAACGACGACAATCAGATTGCACCTTGGTGAAAACATCATGGAGATTTGCAAAGTCATTCAGTATGGACTTAACTCAACTGGGTAGCTTGGATGAGGAGGCCGAGGAAAAGGATCCTCATTCAACAAAGAACATAAGAAGAAATATTATAGATGATGCAGATAATGTCGTCAAGTCTGGTATAAAGAGAGAGGTTAGGGAAACATCTCCTTTTTCTAACCCATTTGACCACAACAATAGGGATTCTTCACCTGTTACTACTCTAGTTCCATCCCTAAATGTCAATGAAATTGTTCATCCCCAACCTAAAAGGCCACAAATTGACCCATTAGATTCCTTGCTGCTCATACTAGATCAGCAGTTCGTAAATTACCTACTGAAGAGGTTCAAAATCGATTGGAGGAAAATGTTGTTGAAGTTCATACAAAGGAATTAG

Coding sequence (CDS)

ATGTCTTTGGATTTGGATAAGCAAAAGATTGGAACAACCATTGGTAAGAAATCAAGAAGACCTCGTACTGCAACACAAACATTTGAACGACGACAATCAGATTGCACCTTGGTGAAAACATCATGGAGATTTGCAAAGTCATTCAGTATGGACTTAACTCAACTGGGTAGCTTGGATGAGGAGGCCGAGGAAAAGGATCCTCATTCAACAAAGAACATAAGAAGAAATATTATAGATGATGCAGATAATGTCGTCAAGTCTGGTATAAAGAGAGAGGTTAGGGAAACATCTCCTTTTTCTAACCCATTTGACCACAACAATAGGGATTCTTCACCTGTTACTACTCTAGTTCCATCCCTAAATGTCAATGAAATTGTTCATCCCCAACCTAAAAGGCCACAAATTGACCCATTAGATTCCTTGCTGCTCATACTAGATCAGCAGTTCGTAAATTACCTACTGAAGAGGTTCAAAATCGATTGGAGGAAAATGTTGTTGAAGTTCATACAAAGGAATTAG

Protein sequence

MSLDLDKQKIGTTIGKKSRRPRTATQTFERRQSDCTLVKTSWRFAKSFSMDLTQLGSLDEEAEEKDPHSTKNIRRNIIDDADNVVKSGIKREVRETSPFSNPFDHNNRDSSPVTTLVPSLNVNEIVHPQPKRPQIDPLDSLLLILDQQFVNYLLKRFKIDWRKMLLKFIQRN
Homology
[Close]
BLAST of Bhi04G001677 vs. TrEMBL
Match: tr|A0A0A0LMZ0|A0A0A0LMZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093830 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 90  KREVRETSPFSNPFDHNNRDSSPVTTLVPSLNVNEIVHPQPKRPQIDPLDS 141
           +RE+RETSP+S+P  HNN D    TT +PS +VN ++HPQ KRPQ  PLDS
Sbjct: 9   EREIRETSPYSDPLHHNNMDFEEATTPLPSTHVNIMIHPQSKRPQNRPLDS 59

[Close]
BLAST of Bhi04G001677 vs. TrEMBL
Match: tr|A0A0A0K715|A0A0A0K715_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G176610 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.1e-04
Identity = 32/73 (43.84%), Postives = 41/73 (56.16%), Query Frame = 0 

Query: 50  MDLTQLGSLDEEAEEKDPHSTKNIRRNIIDDADNVVKSGIKREVRETSPFSNPFDHNNRD 109
           MDLTQ  S DE  EE+           I++D DNV    I+RE+RETSP+ +P  HNN +
Sbjct: 1   MDLTQPSSDDEANEEE-------AMMRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVN 60

Query: 110 SSPVTTLVPSLNV 123
               TT +PS  V
Sbjct: 61  YEEATTPLPSSQV 66

[Close]
BLAST of Bhi04G001677 vs. NCBI nr
Match: KGN61341.1 (hypothetical protein Csa_2G093830 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-07
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 90  KREVRETSPFSNPFDHNNRDSSPVTTLVPSLNVNEIVHPQPKRPQIDPLDS 141
           +RE+RETSP+S+P  HNN D    TT +PS +VN ++HPQ KRPQ  PLDS
Sbjct: 9   EREIRETSPYSDPLHHNNMDFEEATTPLPSTHVNIMIHPQSKRPQNRPLDS 59

[Close]
BLAST of Bhi04G001677 vs. NCBI nr
Match: KGN44082.1 (hypothetical protein Csa_7G176610 [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 4.8e-04
Identity = 32/73 (43.84%), Postives = 41/73 (56.16%), Query Frame = 0 

Query: 50  MDLTQLGSLDEEAEEKDPHSTKNIRRNIIDDADNVVKSGIKREVRETSPFSNPFDHNNRD 109
           MDLTQ  S DE  EE+           I++D DNV    I+RE+RETSP+ +P  HNN +
Sbjct: 1   MDLTQPSSDDEANEEE-------AMMRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVN 60

Query: 110 SSPVTTLVPSLNV 123
               TT +PS  V
Sbjct: 61  YEEATTPLPSSQV 66

The following BLAST results are available for this feature:
BLAST of Bhi04G001677 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi04G001677 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi04G001677 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LMZ0|A0A0A0LMZ0_CUCSA1.0e-0758.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093830 PE=4 SV=1[more]
tr|A0A0A0K715|A0A0A0K715_CUCSA3.1e-0443.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G176610 PE=4 SV=1[more]
BLAST of Bhi04G001677 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61341.11.6e-0758.82hypothetical protein Csa_2G093830 [Cucumis sativus][more]
KGN44082.14.8e-0443.84hypothetical protein Csa_7G176610 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M001677Bhi04M001677mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Bhi04G001677Lsi08G003230Bottle gourd (USVL1VR-Ls)lsiwgoB604
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi04G001677Bottle gourd (USVL1VR-Ls)lsiwgoB599
Bhi04G001677Watermelon (Charleston Gray)wcgwgoB636
Bhi04G001677Watermelon (97103) v2wgowmbB332