Bhi04G001624 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04G001624
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Zf-CCHC domain-containing protein
Location	chr4 : 54306905 .. 54307306 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCAGGATTCATAGGAAATTTGAGAAGCTGGTGGCACAATCAACTTTCTGAACGGGAAAGGCAGACTATTCTAACTGCCACTAAGATAGTTACAGTAAAGCAAGAAGGAAATCTAGGAGCAGGAATTGCCCCAATGGAGATAATGCAAAATGAACTAGATATGGTTAACTCATTGGTATACACTGCAATGAAACACTTTGTAGGACAGACAATCATCTACAGTAATCAAGCTACTGAAGCACTTCTCAAGATGCGTTGTAGAAAGATGAGTGATTTCAAATGGTACAAGGACGTTTTTATGGCGCGACTTTATAACCTTATATCCCGCGGAGACGAAATTTGGAAACAAAAATTCGTAGAAGGATTACCTCCTTATATTGCCAAAAATTTTTATTAG

mRNA sequence

ATGGTTTCAGGATTCATAGGAAATTTGAGAAGCTGGTGGCACAATCAACTTTCTGAACGGGAAAGGCAGACTATTCTAACTGCCACTAAGATAGTTACAGTAAAGCAAGAAGGAAATCTAGGAGCAGGAATTGCCCCAATGGAGATAATGCAAAATGAACTAGATATGGTTAACTCATTGGTATACACTGCAATGAAACACTTTGTAGGACAGACAATCATCTACAGTAATCAAGCTACTGAAGCACTTCTCAAGATGCGTTGTAGAAAGATGAGTGATTTCAAATGGTACAAGGACGTTTTTATGGCGCGACTTTATAACCTTATATCCCGCGGAGACGAAATTTGGAAACAAAAATTCGTAGAAGGATTACCTCCTTATATTGCCAAAAATTTTTATTAG

Coding sequence (CDS)

ATGGTTTCAGGATTCATAGGAAATTTGAGAAGCTGGTGGCACAATCAACTTTCTGAACGGGAAAGGCAGACTATTCTAACTGCCACTAAGATAGTTACAGTAAAGCAAGAAGGAAATCTAGGAGCAGGAATTGCCCCAATGGAGATAATGCAAAATGAACTAGATATGGTTAACTCATTGGTATACACTGCAATGAAACACTTTGTAGGACAGACAATCATCTACAGTAATCAAGCTACTGAAGCACTTCTCAAGATGCGTTGTAGAAAGATGAGTGATTTCAAATGGTACAAGGACGTTTTTATGGCGCGACTTTATAACCTTATATCCCGCGGAGACGAAATTTGGAAACAAAAATTCGTAGAAGGATTACCTCCTTATATTGCCAAAAATTTTTATTAG

Protein sequence

MVSGFIGNLRSWWHNQLSERERQTILTATKIVTVKQEGNLGAGIAPMEIMQNELDMVNSLVYTAMKHFVGQTIIYSNQATEALLKMRCRKMSDFKWYKDVFMARLYNLISRGDEIWKQKFVEGLPPYIAKNFY

Homology

[Close]

BLAST of Bhi04G001624 vs. TrEMBL
Match: tr|A5BG66|A5BG66_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010889 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.2e-20
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 1   MVSGFIGNLRSWWHNQLSERERQTILTATKIVTVKQEGNLGAGIAPMEIMQNELDMVNSL 60
           +V GF G L+ WW + LS+ +R+ IL A K + +K+EG          +   E D VN+L
Sbjct: 23  LVIGFTGLLKGWWDHYLSQNDREYILNAKKTI-IKEEGT--------SVQTYEEDAVNTL 82

Query: 61  VYTAMKHFVGQTIIYSNQATEALLKMRCRKMSDFKWYKDVFMARLYNLISRGDEIWKQKF 120
           ++   KHF+G  + +  + +E L  +RC  + DFKWYKD+F+ ++ +    G+  WK+KF
Sbjct: 83  IFAITKHFIGDPVYFQERTSEILNNLRCPTLQDFKWYKDMFLVKVMSRPDCGNHYWKEKF 142

Query: 121 VEGLPPYIAK 131
           + GLP   A+
Sbjct: 143 ISGLPTLFAE 143

[Close]

BLAST of Bhi04G001624 vs. TrEMBL
Match: tr|A5BJS2|A5BJS2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_021083 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.2e-20
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 1   MVSGFIGNLRSWWHNQLSERERQTILTATKIVTVKQEGNLGAGIAPMEIMQNELDMVNSL 60
           +V GF G L+ WW + LS+ +R+ IL A K + +K+EG          +   E D VN+L
Sbjct: 23  LVIGFTGLLKGWWDHYLSQNDREYILNAKKTI-IKEEGT--------SVQTYEEDAVNTL 82

Query: 61  VYTAMKHFVGQTIIYSNQATEALLKMRCRKMSDFKWYKDVFMARLYNLISRGDEIWKQKF 120
           ++   KHF+G  + +  + +E L  +RC  + DFKWYKD+F+ ++ +    G+  WK+KF
Sbjct: 83  IFAITKHFIGDPVYFQERTSEILNNLRCPTLQDFKWYKDMFLVKVMSRPDCGNHYWKEKF 142

Query: 121 VEGLPPYIAK 131
           + GLP   A+
Sbjct: 143 ISGLPTLFAE 143

[Close]

BLAST of Bhi04G001624 vs. TrEMBL
Match: tr|A5B5N7|A5B5N7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_008707 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.2e-20
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 1   MVSGFIGNLRSWWHNQLSERERQTILTATKIVTVKQEGNLGAGIAPMEIMQNELDMVNSL 60
           +V GF G L+ WW + LS+ +R+ IL A K + +K+EG          +   E D VN+L
Sbjct: 23  LVIGFTGLLKGWWDHYLSQNDREYILNAKKTI-IKEEGT--------SVQTYEEDAVNTL 82

Query: 61  VYTAMKHFVGQTIIYSNQATEALLKMRCRKMSDFKWYKDVFMARLYNLISRGDEIWKQKF 120
           ++   KHF+G  + +  + +E L  +RC  + DFKWYKD+F+ ++ +    G+  WK+KF
Sbjct: 83  IFAITKHFIGDPVYFQERTSEILNNLRCPTLQDFKWYKDMFLVKVMSRPDCGNHYWKEKF 142

Query: 121 VEGLPPYIAK 131
           + GLP   A+
Sbjct: 143 ISGLPTLFAE 143

[Close]

BLAST of Bhi04G001624 vs. TrEMBL
Match: tr|A0A0A0LWY2|A0A0A0LWY2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G385030 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.0e-19
Identity = 52/94 (55.32%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 11  SWWHNQLSERERQTILTATKIVTVKQEGNLGAGIAPMEIMQNELDMVNSLVYTAMKHFVG 70
           SWWHNQL+E++RQ ILT TK V VK +G      + + +   E DM+N L+YT  KHF+G
Sbjct: 9   SWWHNQLTEQDRQRILTTTKTV-VKTKG------SSVPVQTEEPDMMNQLLYTMTKHFIG 68

Query: 71  QTIIYSNQATEALLKMRCRKMSDFKWYKDVFMAR 105
            T I+ N ATEALL ++C KMS +KWYKD FMAR
Sbjct: 69  STQIHFNLATEALLGLKCHKMSRYKWYKDTFMAR 95

[Close]

BLAST of Bhi04G001624 vs. TrEMBL
Match: tr|A0A151R3E4|A0A151R3E4_CAJCA (Polyprotein OS=Cajanus cajan OX=3821 GN=KK1_041741 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-19
Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 0


Query: 1   MVSGFIGNLRSWWHNQLSERERQTILTATKIVTVKQEGNLGAGIAPMEIMQNELDMVNSL 60
           + SGF G L+ WW N +SE E+  ILTA K      EGN+   +    I     D VN+L
Sbjct: 23  LTSGFSGQLKGWWDNYVSEEEKHEILTAVK---TDAEGNIITTVKGDSIP----DAVNTL 82

Query: 61  VYTAMKHFVGQTIIYSNQATEALLKMRCRKMSDFKWYKDVFMARLYNLISRGDEIWKQKF 120
           +   +KHF+G   I+ +++ E L  ++CR + DF+WYKD F+ R+Y         WK+KF
Sbjct: 83  IMAIIKHFIGDPSIWKDRSGELLSNLKCRTLGDFRWYKDTFLTRVYTRDDSNQPFWKEKF 140

Query: 121 VEGLP 126
           + GLP
Sbjct: 143 LAGLP 140

[Close]

BLAST of Bhi04G001624 vs. NCBI nr
Match: XP_022151716.1 (uncharacterized protein LOC111019629 [Momordica charantia])

HSP 1 Score: 154.8 bits (390), Expect = 2.0e-34
Identity = 75/133 (56.39%), Postives = 95/133 (71.43%), Query Frame = 0


Query: 1   MVSGFIGNLRSWWHNQLSERERQTILTATKIVTVKQEGNLGAGIAPMEIMQNELDMVNSL 60
           ++S   GNLRSWWHNQL++ +R  IL ATK V VKQEG+    I       +E DMVN L
Sbjct: 207 LISSLSGNLRSWWHNQLTDEDRTKILIATKAV-VKQEGSNAMQI-------DEPDMVNQL 266

Query: 61  VYTAMKHFVGQTIIYSNQATEALLKMRCRKMSDFKWYKDVFMARLYNLISRGDEIWKQKF 120
           +Y   K+F+G T +YS+   EALL +RCRKMS++KWYKD F+ARLY + + G +IWKQKF
Sbjct: 267 IYAMTKNFIGSTQVYSDLNAEALLSLRCRKMSNYKWYKDTFLARLYTITTCGADIWKQKF 326

Query: 121 VEGLPPYIAKNFY 134
           VEGLP YIA+ FY
Sbjct: 327 VEGLPHYIAQKFY 331

[Close]

BLAST of Bhi04G001624 vs. NCBI nr
Match: CAN67558.1 (hypothetical protein VITISV_008707 [Vitis vinifera])

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-19
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 1   MVSGFIGNLRSWWHNQLSERERQTILTATKIVTVKQEGNLGAGIAPMEIMQNELDMVNSL 60
           +V GF G L+ WW + LS+ +R+ IL A K + +K+EG          +   E D VN+L
Sbjct: 23  LVIGFTGLLKGWWDHYLSQNDREYILNAKKTI-IKEEGT--------SVQTYEEDAVNTL 82

Query: 61  VYTAMKHFVGQTIIYSNQATEALLKMRCRKMSDFKWYKDVFMARLYNLISRGDEIWKQKF 120
           ++   KHF+G  + +  + +E L  +RC  + DFKWYKD+F+ ++ +    G+  WK+KF
Sbjct: 83  IFAITKHFIGDPVYFQERTSEILNNLRCPTLQDFKWYKDMFLVKVMSRPDCGNHYWKEKF 142

Query: 121 VEGLPPYIAK 131
           + GLP   A+
Sbjct: 143 ISGLPTLFAE 143

[Close]

BLAST of Bhi04G001624 vs. NCBI nr
Match: CAN70247.1 (hypothetical protein VITISV_021083 [Vitis vinifera])

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-19
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 1   MVSGFIGNLRSWWHNQLSERERQTILTATKIVTVKQEGNLGAGIAPMEIMQNELDMVNSL 60
           +V GF G L+ WW + LS+ +R+ IL A K + +K+EG          +   E D VN+L
Sbjct: 23  LVIGFTGLLKGWWDHYLSQNDREYILNAKKTI-IKEEGT--------SVQTYEEDAVNTL 82

Query: 61  VYTAMKHFVGQTIIYSNQATEALLKMRCRKMSDFKWYKDVFMARLYNLISRGDEIWKQKF 120
           ++   KHF+G  + +  + +E L  +RC  + DFKWYKD+F+ ++ +    G+  WK+KF
Sbjct: 83  IFAITKHFIGDPVYFQERTSEILNNLRCPTLQDFKWYKDMFLVKVMSRPDCGNHYWKEKF 142

Query: 121 VEGLPPYIAK 131
           + GLP   A+
Sbjct: 143 ISGLPTLFAE 143

[Close]

BLAST of Bhi04G001624 vs. NCBI nr
Match: CAN83210.1 (hypothetical protein VITISV_010889 [Vitis vinifera])

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-19
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 1   MVSGFIGNLRSWWHNQLSERERQTILTATKIVTVKQEGNLGAGIAPMEIMQNELDMVNSL 60
           +V GF G L+ WW + LS+ +R+ IL A K + +K+EG          +   E D VN+L
Sbjct: 23  LVIGFTGLLKGWWDHYLSQNDREYILNAKKTI-IKEEGT--------SVQTYEEDAVNTL 82

Query: 61  VYTAMKHFVGQTIIYSNQATEALLKMRCRKMSDFKWYKDVFMARLYNLISRGDEIWKQKF 120
           ++   KHF+G  + +  + +E L  +RC  + DFKWYKD+F+ ++ +    G+  WK+KF
Sbjct: 83  IFAITKHFIGDPVYFQERTSEILNNLRCPTLQDFKWYKDMFLVKVMSRPDCGNHYWKEKF 142

Query: 121 VEGLPPYIAK 131
           + GLP   A+
Sbjct: 143 ISGLPTLFAE 143

[Close]

BLAST of Bhi04G001624 vs. NCBI nr
Match: XP_023743558.1 (uncharacterized protein LOC111891720 [Lactuca sativa])

HSP 1 Score: 104.8 bits (260), Expect = 2.4e-19
Identity = 46/130 (35.38%), Postives = 80/130 (61.54%), Query Frame = 0


Query: 1   MVSGFIGNLRSWWHNQLSERERQTILTATKIVTVKQEGNLGAGIAPMEIMQNELDMVNSL 60
           + SGF G+L+ WW   +S+ E+  IL+A K + +KQE N        +I   E DMVN+L
Sbjct: 20  ITSGFTGSLKGWWDFYISQEEKDYILSAKKTI-IKQENN-------QQIQTFEDDMVNTL 79

Query: 61  VYTAMKHFVGQTIIYSNQATEALLKMRCRKMSDFKWYKDVFMARLYNLISRGDEIWKQKF 120
           ++  +K+FVG    +  + +E L+ + CRK++DF+WYKD ++ ++++     +  WK++F
Sbjct: 80  IFAIIKNFVGDPTTFQEKTSEILMNLHCRKLTDFRWYKDNYLVKVFSRPDCKESYWKERF 139

Query: 121 VEGLPPYIAK 131
           + GLP   A+
Sbjct: 140 IAGLPKLFAE 141

The following BLAST results are available for this feature:

BLAST of Bhi04G001624 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi04G001624 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi04G001624 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A5BG66\|A5BG66_VITVI	9.2e-20	36.15	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010889 PE=4 SV=1	[more]
tr\|A5BJS2\|A5BJS2_VITVI	9.2e-20	36.15	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_021083 PE=4 SV=1	[more]
tr\|A5B5N7\|A5B5N7_VITVI	9.2e-20	36.15	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_008707 PE=4 SV=1	[more]
tr\|A0A0A0LWY2\|A0A0A0LWY2_CUCSA	2.0e-19	55.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G385030 PE=4 SV=1	[more]
tr\|A0A151R3E4\|A0A151R3E4_CAJCA	2.7e-19	39.20	Polyprotein OS=Cajanus cajan OX=3821 GN=KK1_041741 PE=4 SV=1	[more]

BLAST of Bhi04G001624 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151716.1	2.0e-34	56.39	uncharacterized protein LOC111019629 [Momordica charantia]	[more]
CAN67558.1	1.4e-19	36.15	hypothetical protein VITISV_008707 [Vitis vinifera]	[more]
CAN70247.1	1.4e-19	36.15	hypothetical protein VITISV_021083 [Vitis vinifera]	[more]
CAN83210.1	1.4e-19	36.15	hypothetical protein VITISV_010889 [Vitis vinifera]	[more]
XP_023743558.1	2.4e-19	35.38	uncharacterized protein LOC111891720 [Lactuca sativa]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M001624	Bhi04M001624	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33054:SF8	SUBFAMILY NOT NAMED	coord: 2..125
None	No IPR available	PANTHER	PTHR33054	FAMILY NOT NAMED	coord: 2..125

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi04G001624	Cucumber (Gy14) v1	cgywgoB732
Bhi04G001624	Cucumber (Gy14) v2	cgybwgoB562
Bhi04G001624	Cucurbita maxima (Rimu)	cmawgoB0484
Bhi04G001624	Cucurbita maxima (Rimu)	cmawgoB1116
Bhi04G001624	Cucurbita moschata (Rifu)	cmowgoB0484
Bhi04G001624	Cucurbita moschata (Rifu)	cmowgoB1115
Bhi04G001624	Cucurbita pepo (Zucchini)	cpewgoB0199
Bhi04G001624	Cucurbita pepo (Zucchini)	cpewgoB0411
Bhi04G001624	Wild cucumber (PI 183967)	cpiwgoB595
Bhi04G001624	Cucumber (Chinese Long) v3	cucwgoB608
Bhi04G001624	Cucumber (Chinese Long) v2	cuwgoB590
Bhi04G001624	Bottle gourd (USVL1VR-Ls)	lsiwgoB604
Bhi04G001624	Melon (DHL92) v3.6.1	medwgoB329
Bhi04G001624	Melon (DHL92) v3.5.1	mewgoB329
Bhi04G001624	Watermelon (Charleston Gray)	wcgwgoB632
Bhi04G001624	Watermelon (97103) v2	wgowmbB332
Bhi04G001624	Watermelon (97103) v1	wgowmB324