Bhi04G001604 (gene) Wax gourd

NameBhi04G001604
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptiontransposon Tf2-1 polyprotein isoform X1
Locationchr4 : 52865928 .. 52866328 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGAAATACAGAAGGTGTCAACCATAGAGGAGAAGTTGGTGTCGATTGCAAAGAGCATTGAGAGATTAGAATTGCAGACAGAAAAACATCAAGAAATGCTCGTTCCCCATGTTACGAAAATGACCAAAGAAAAAGCAAAGGTGACGGAAGAGGCAAAAGGATCAAATGTCAATAAGGGGTGCAGAACAAACAGTTTGGTGAAAACATCTTATGACAAAGCAAAAAGCGATAGGAGTGAATTCAAGAAAGTAGAAATGTCGAAGTTTAGCGAAAGCTATTCAGACGCGTGGCTACACAAAGCAGATCGCTATTTTCAAGTTCACAAGTTAACTGAATTTGAGAAGATGACGGTAGTGGTTGTTAATTTCGAAGACATCGCATTAGACTTGTACCGGTCGGAG

mRNA sequence

TCGAAATACAGAAGGTGTCAACCATAGAGGAGAAGTTGGTGTCGATTGCAAAGAGCATTGAGAGATTAGAATTGCAGACAGAAAAACATCAAGAAATGCTCGTTCCCCATGTTACGAAAATGACCAAAGAAAAAGCAAAGGTGACGGAAGAGGCAAAAGGATCAAATGTCAATAAGGGGTGCAGAACAAACAGTTTGGTGAAAACATCTTATGACAAAGCAAAAAGCGATAGGAGTGAATTCAAGAAAGTAGAAATGTCGAAGTTTAGCGAAAGCTATTCAGACGCGTGGCTACACAAAGCAGATCGCTATTTTCAAGTTCACAAGTTAACTGAATTTGAGAAGATGACGGTAGTGGTTGTTAATTTCGAAGACATCGCATTAGACTTGTACCGGTCGGAG

Coding sequence (CDS)

TCGAAATACAGAAGGTGTCAACCATAGAGGAGAAGTTGGTGTCGATTGCAAAGAGCATTGAGAGATTAGAATTGCAGACAGAAAAACATCAAGAAATGCTCGTTCCCCATGTTACGAAAATGACCAAAGAAAAAGCAAAGGTGACGGAAGAGGCAAAAGGATCAAATGTCAATAAGGGGTGCAGAACAAACAGTTTGGTGAAAACATCTTATGACAAAGCAAAAAGCGATAGGAGTGAATTCAAGAAAGTAGAAATGTCGAAGTTTAGCGAAAGCTATTCAGACGCGTGGCTACACAAAGCAGATCGCTATTTTCAAGTTCACAAGTTAACTGAATTTGAGAAGATGACGGTAGTGGTTGTTAATTTCGAAGACATCGCATTAGACTTGTACCGGTCGGAG

Protein sequence

EIQKVSTIEEKLVSIAKSIERLELQTEKHQEMLVPHVTKMTKEKAKVTEEAKGSNVNKGCRTNSLVKTSYDKAKSDRSEFKKVEMSKFSESYSDAWLHKADRYFQVHKLTEFEKMTVVVVNFEDIALDLYRSE
BLAST of Bhi04G001604 vs. TrEMBL
Match: tr|A0A1S4E5H0|A0A1S4E5H0_CUCME (uncharacterized protein LOC107992206 OS=Cucumis melo OX=3656 GN=LOC107992206 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.2e-12
Identity = 50/149 (33.56%), Postives = 82/149 (55.03%), Query Frame = 0

Query: 1   EIQKVSTIEEKLVSIAKSIERLELQTEKHQEMLVPHVTKMTKEKAKVTEEAKGSNVNKGC 60
           E+ K+  IE  L+ ++K++E + LQ+EK Q+ ++ ++    K ++   E    S++    
Sbjct: 23  ELMKMPMIESTLIELSKNMETMRLQSEKQQQAILSYMEANAKGRSTARERMNESDIQNSP 82

Query: 61  RTNSL----------------VKTSYDKAKSDRSEFKKVEMSKFSESYSDAWLHKADRYF 120
            T S                  KT  D+  SD+S+FK+VE   F+    ++WL +A+RYF
Sbjct: 83  ATKSKDGKASSSRDIGETSTERKTDSDENTSDQSKFKQVERPVFTGEDPESWLFRAERYF 142

Query: 121 QVHKLTEFEKMTVVVVNFEDIALDLYRSE 134
           Q+HKLTE EKM V  + F+  AL+ YRS+
Sbjct: 143 QIHKLTESEKMLVSTICFDGPALNWYRSQ 171

BLAST of Bhi04G001604 vs. TrEMBL
Match: tr|A0A1S4E1D6|A0A1S4E1D6_CUCME (transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496677 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.9e-10
Identity = 52/155 (33.55%), Postives = 87/155 (56.13%), Query Frame = 0

Query: 1   EIQKVSTIEEKLVSIAKSIERLELQTEKHQEMLVPHVTKMTKEKAKVTEEAKGSN----- 60
           E+ K+  IE  L  IAK+++ +  Q++K ++ML+  +  + K++    E  +  N     
Sbjct: 30  ELGKMPIIELSLNDIAKNMQTMRAQSDKQEQMLLMIMETIAKDRTTTGERNEEPNALMSV 89

Query: 61  VNKG-----CRTNSLV------------KTSYDKAKSDRSEFKKVEMSKFSESYSDAWLH 120
            NKG       + S V            KT  ++A +DR++FKKVEM  F+    D+WL 
Sbjct: 90  TNKGKEKEATSSKSAVSGQSNSDDRNEGKTETEEAAADRNKFKKVEMPVFAGEDLDSWLF 149

Query: 121 KADRYFQVHKLTEFEKMTVVVVNFEDIALDLYRSE 134
           +A+RYFQ+HKL++ EKM V  ++F+  AL+ Y+S+
Sbjct: 150 RAERYFQIHKLSDSEKMLVSTISFDGPALNRYQSQ 184

BLAST of Bhi04G001604 vs. NCBI nr
Match: XP_016903467.1 (PREDICTED: uncharacterized protein LOC107992206 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 50/149 (33.56%), Postives = 82/149 (55.03%), Query Frame = 0

Query: 1   EIQKVSTIEEKLVSIAKSIERLELQTEKHQEMLVPHVTKMTKEKAKVTEEAKGSNVNKGC 60
           E+ K+  IE  L+ ++K++E + LQ+EK Q+ ++ ++    K ++   E    S++    
Sbjct: 23  ELMKMPMIESTLIELSKNMETMRLQSEKQQQAILSYMEANAKGRSTARERMNESDIQNSP 82

Query: 61  RTNSL----------------VKTSYDKAKSDRSEFKKVEMSKFSESYSDAWLHKADRYF 120
            T S                  KT  D+  SD+S+FK+VE   F+    ++WL +A+RYF
Sbjct: 83  ATKSKDGKASSSRDIGETSTERKTDSDENTSDQSKFKQVERPVFTGEDPESWLFRAERYF 142

Query: 121 QVHKLTEFEKMTVVVVNFEDIALDLYRSE 134
           Q+HKLTE EKM V  + F+  AL+ YRS+
Sbjct: 143 QIHKLTESEKMLVSTICFDGPALNWYRSQ 171

BLAST of Bhi04G001604 vs. NCBI nr
Match: XP_016902037.1 (PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 5.9e-10
Identity = 52/155 (33.55%), Postives = 87/155 (56.13%), Query Frame = 0

Query: 1   EIQKVSTIEEKLVSIAKSIERLELQTEKHQEMLVPHVTKMTKEKAKVTEEAKGSN----- 60
           E+ K+  IE  L  IAK+++ +  Q++K ++ML+  +  + K++    E  +  N     
Sbjct: 30  ELGKMPIIELSLNDIAKNMQTMRAQSDKQEQMLLMIMETIAKDRTTTGERNEEPNALMSV 89

Query: 61  VNKG-----CRTNSLV------------KTSYDKAKSDRSEFKKVEMSKFSESYSDAWLH 120
            NKG       + S V            KT  ++A +DR++FKKVEM  F+    D+WL 
Sbjct: 90  TNKGKEKEATSSKSAVSGQSNSDDRNEGKTETEEAAADRNKFKKVEMPVFAGEDLDSWLF 149

Query: 121 KADRYFQVHKLTEFEKMTVVVVNFEDIALDLYRSE 134
           +A+RYFQ+HKL++ EKM V  ++F+  AL+ Y+S+
Sbjct: 150 RAERYFQIHKLSDSEKMLVSTISFDGPALNRYQSQ 184

BLAST of Bhi04G001604 vs. NCBI nr
Match: XP_022137369.1 (uncharacterized protein LOC111008840 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 8.7e-06
Identity = 44/138 (31.88%), Postives = 74/138 (53.62%), Query Frame = 0

Query: 4   KVSTIEEKLVSIAKSIERLELQTEKHQEMLVP-HVTKMTKEKAKVTEEAKGSN------- 63
           +   +E+++VS+   I  L  + ++ Q+ +   HVT  T     +      SN       
Sbjct: 9   RCEAVEQEIVSVKLEIALLHQRFDEQQKQIESLHVTLKTFMAQTIGGSPSQSNSLLTGET 68

Query: 64  -VNKGCRTNSLVKTSYDKAK-SDRSEFKKVEMSKFSESYSDAWLHKADRYFQVHKLTEFE 123
            + KG      V  + ++A+ +DR+ FKKVEM  F     +AW+ +A+RYF++ KLT+ E
Sbjct: 69  LIRKGKEVAEDVPANNNEAQGNDRNRFKKVEMPIFGGEELEAWIFRAERYFEIQKLTDEE 128

Query: 124 KMTVVVVNFEDIALDLYR 132
           KM V +++F+ IAL  YR
Sbjct: 129 KMIVAIISFDGIALAWYR 146

BLAST of Bhi04G001604 vs. NCBI nr
Match: XP_022154744.1 (uncharacterized protein LOC111021922 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 29/67 (43.28%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 67  KTSYDKAKS---DRSEFKKVEMSKFSESYSDAWLHKADRYFQVHKLTEFEKMTVVVVNFE 126
           +TS  KA+    +R++FKKVEM  F+    ++WL +A+RYF+++ L+E EKMTV +++FE
Sbjct: 96  ETSTGKAEGPGVERNKFKKVEMPVFTGDDPNSWLFRAERYFEINHLSEEEKMTVTIISFE 155

Query: 127 DIALDLY 131
             A+  Y
Sbjct: 156 GAAMKWY 162

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S4E5H0|A0A1S4E5H0_CUCME9.2e-1233.56uncharacterized protein LOC107992206 OS=Cucumis melo OX=3656 GN=LOC107992206 PE=... [more]
tr|A0A1S4E1D6|A0A1S4E1D6_CUCME3.9e-1033.55transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496677 ... [more]
Match NameE-valueIdentityDescription
XP_016903467.11.4e-1133.56PREDICTED: uncharacterized protein LOC107992206 [Cucumis melo][more]
XP_016902037.15.9e-1033.55PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Cucumis melo][more]
XP_022137369.18.7e-0631.88uncharacterized protein LOC111008840 [Momordica charantia][more]
XP_022154744.11.3e-0443.28uncharacterized protein LOC111021922 [Momordica charantia][more]

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M001604Bhi04M001604mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 5..25

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None